RNA–Protein interactions for RNA: ENST00000493075.1

LRTM1-202, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

TSL 1 (best) BASIC

Gene LRTM1, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-202ENST00000493075 NISCHQ9Y2I1 1504 aa28.33■■■□□ 2.13
LRTM1-202ENST00000493075 CCDC180Q9P1Z9 1646 aa25.22■■□□□ 1.63
LRTM1-202ENST00000493075 ABCC9O60706 1549 aa25.03■■□□□ 1.6
LRTM1-202ENST00000493075 RB1CC1Q8TDY2 1594 aa23.94■■□□□ 1.42
LRTM1-202ENST00000493075 NACADO15069 1562 aa23.88■■□□□ 1.41
LRTM1-202ENST00000493075 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
LRTM1-202ENST00000493075 MYO15BQ96JP2 1530 aa23.68■■□□□ 1.38
LRTM1-202ENST00000493075 ZCCHC6Q5VYS8 1495 aaKnown RBP23.51■■□□□ 1.35
LRTM1-202ENST00000493075 DCAF1Q9Y4B6 1507 aa23.45■■□□□ 1.34
LRTM1-202ENST00000493075 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.34
LRTM1-202ENST00000493075 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
LRTM1-202ENST00000493075 UNC13AQ9UPW8 1703 aa23.23■■□□□ 1.31
LRTM1-202ENST00000493075 BICRAQ9NZM4 1560 aa23.21■■□□□ 1.31
LRTM1-202ENST00000493075 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
LRTM1-202ENST00000493075 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
LRTM1-202ENST00000493075 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
LRTM1-202ENST00000493075 CC2D2AQ9P2K1 1620 aa22.59■■□□□ 1.21
LRTM1-202ENST00000493075 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
LRTM1-202ENST00000493075 AEBP2Q6ZN18 517 aaPredicted RBP22.48■■□□□ 1.19
LRTM1-202ENST00000493075 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
LRTM1-202ENST00000493075 ATAD2BQ9ULI0 1458 aa22.02■■□□□ 1.12
LRTM1-202ENST00000493075 SMARCA4P51532 1647 aa21.98■■□□□ 1.11
LRTM1-202ENST00000493075 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
LRTM1-202ENST00000493075 SMARCA2P51531 1590 aa21.95■■□□□ 1.1
LRTM1-202ENST00000493075 HMGXB3Q12766 1538 aa21.87■■□□□ 1.09
LRTM1-202ENST00000493075 PEG3Q9GZU2 1588 aa21.82■■□□□ 1.08
LRTM1-202ENST00000493075 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
LRTM1-202ENST00000493075 BAZ1BQ9UIG0 1483 aaKnown RBP21.78■■□□□ 1.08
LRTM1-202ENST00000493075 ERCC6Q03468 1493 aa21.6■■□□□ 1.05
LRTM1-202ENST00000493075 NESP48681 1621 aa21.56■■□□□ 1.04
LRTM1-202ENST00000493075 CUX2O14529 1486 aa21.53■■□□□ 1.04
LRTM1-202ENST00000493075 RSF1Q96T23 1441 aaPredicted RBP21.5■■□□□ 1.03
LRTM1-202ENST00000493075 LAMC3Q9Y6N6 1575 aa21.48■■□□□ 1.03
LRTM1-202ENST00000493075 WIZO95785 1651 aa21.48■■□□□ 1.03
LRTM1-202ENST00000493075 CADPSQ9ULU8 1353 aa21.43■■□□□ 1.02
LRTM1-202ENST00000493075 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
LRTM1-202ENST00000493075 CHIC1Q5VXU3 224 aa21.37■■□□□ 1.01
LRTM1-202ENST00000493075 DNAJC5Q9H3Z4 198 aa21.29■■□□□ 1
LRTM1-202ENST00000493075 TOP2AP11388 1531 aaKnown RBP21.29■■□□□ 1
LRTM1-202ENST00000493075 THOC2Q8NI27 1593 aaKnown RBP21.24■□□□□ 0.99
LRTM1-202ENST00000493075 CFTRP13569 1480 aa21.22■□□□□ 0.99
LRTM1-202ENST00000493075 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
LRTM1-202ENST00000493075 MRC2Q9UBG0 1479 aa21.16■□□□□ 0.98
LRTM1-202ENST00000493075 FANCD2Q9BXW9 1451 aa21.13■□□□□ 0.97
LRTM1-202ENST00000493075 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
LRTM1-202ENST00000493075 CCDC88BA6NC98 1476 aa21.09■□□□□ 0.97
LRTM1-202ENST00000493075 WDR62O43379 1518 aa21.08■□□□□ 0.96
LRTM1-202ENST00000493075 URB2Q14146 1524 aaKnown RBP20.92■□□□□ 0.94
LRTM1-202ENST00000493075 PRDM2Q13029 1718 aa20.81■□□□□ 0.92
LRTM1-202ENST00000493075 ABCC8Q09428 1581 aa20.79■□□□□ 0.92
LRTM1-202ENST00000493075 TOPBP1Q92547 1522 aa20.74■□□□□ 0.91
LRTM1-202ENST00000493075 IFT140Q96RY7 1462 aa20.73■□□□□ 0.91
LRTM1-202ENST00000493075 SUPT5HO00267 1087 aaKnown RBP20.72■□□□□ 0.91
LRTM1-202ENST00000493075 DNMBPQ6XZF7 1577 aa20.67■□□□□ 0.9
LRTM1-202ENST00000493075 OSCARQ8IYS5 282 aa20.66■□□□□ 0.9
LRTM1-202ENST00000493075 ZNF608Q9ULD9 1512 aaPredicted RBP20.61■□□□□ 0.89
LRTM1-202ENST00000493075 POLA1P09884 1462 aaPredicted RBP20.55■□□□□ 0.88
LRTM1-202ENST00000493075 SOGA1O94964 1423 aa20.52■□□□□ 0.87
LRTM1-202ENST00000493075 TARBP1Q13395 1621 aaKnown RBP20.51■□□□□ 0.87
LRTM1-202ENST00000493075 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.87
LRTM1-202ENST00000493075 RAD54L2Q9Y4B4 1467 aa20.46■□□□□ 0.87
LRTM1-202ENST00000493075 CUX1P39880 1505 aa20.46■□□□□ 0.87
LRTM1-202ENST00000493075 EIF4G3O43432 1585 aaKnown RBP20.45■□□□□ 0.86
LRTM1-202ENST00000493075 FGD5Q6ZNL6 1462 aa20.45■□□□□ 0.86
LRTM1-202ENST00000493075 TDRD9Q8NDG6 1382 aaKnown RBP20.42■□□□□ 0.86
LRTM1-202ENST00000493075 TRIM41Q8WV44 630 aa20.38■□□□□ 0.85
LRTM1-202ENST00000493075 WDR97A6NE52 1622 aa20.36■□□□□ 0.85
LRTM1-202ENST00000493075 FBLN2P98095 1184 aa20.32■□□□□ 0.84
LRTM1-202ENST00000493075 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
LRTM1-202ENST00000493075 ABCA10Q8WWZ4 1543 aa20.27■□□□□ 0.83
LRTM1-202ENST00000493075 CHMP7Q8WUX9 453 aaPredicted RBP20.27■□□□□ 0.83
LRTM1-202ENST00000493075 SNAPC4Q5SXM2 1469 aa20.26■□□□□ 0.83
LRTM1-202ENST00000493075 WRNQ14191 1432 aaPredicted RBP eCLIP20.26■□□□□ 0.83
LRTM1-202ENST00000493075 MAGI1Q96QZ7 1491 aaPredicted RBP20.25■□□□□ 0.83
LRTM1-202ENST00000493075 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
LRTM1-202ENST00000493075 ARHGEF11O15085 1522 aa20.2■□□□□ 0.82
LRTM1-202ENST00000493075 TOP2BQ02880 1626 aa20.2■□□□□ 0.82
LRTM1-202ENST00000493075 RIMBP3CA6NJZ7 1639 aa20.19■□□□□ 0.82
LRTM1-202ENST00000493075 RIMBP3BA6NNM3 1639 aa20.19■□□□□ 0.82
LRTM1-202ENST00000493075 RIMBP3Q9UFD9 1639 aa20.19■□□□□ 0.82
LRTM1-202ENST00000493075 SYNJ2O15056 1496 aa20.19■□□□□ 0.82
LRTM1-202ENST00000493075 CHD1O14646 1710 aa20.19■□□□□ 0.82
LRTM1-202ENST00000493075 BIVM-ERCC5R4GMW8 1640 aa20.15■□□□□ 0.82
LRTM1-202ENST00000493075 SYNJ1O43426 1573 aa20.14■□□□□ 0.81
LRTM1-202ENST00000493075 ABCA5Q8WWZ7 1642 aa20.14■□□□□ 0.81
LRTM1-202ENST00000493075 CYB5RLQ6IPT4 315 aa20.11■□□□□ 0.81
LRTM1-202ENST00000493075 CLASP1Q7Z460 1538 aa20.07■□□□□ 0.8
LRTM1-202ENST00000493075 PBRM1Q86U86 1689 aa20.06■□□□□ 0.8
LRTM1-202ENST00000493075 ARAP1Q96P48 1450 aa20.02■□□□□ 0.8
LRTM1-202ENST00000493075 FHAD1B1AJZ9 1412 aa20.02■□□□□ 0.8
LRTM1-202ENST00000493075 ERICH3Q5RHP9 1530 aa20.01■□□□□ 0.79
LRTM1-202ENST00000493075 GRIN2AQ12879 1464 aa20■□□□□ 0.79
LRTM1-202ENST00000493075 ADAMTS12P58397 1594 aa19.96■□□□□ 0.79
LRTM1-202ENST00000493075 NUP160Q12769 1436 aa19.96■□□□□ 0.79
LRTM1-202ENST00000493075 KIF27Q86VH2 1401 aa19.89■□□□□ 0.77
LRTM1-202ENST00000493075 IGF1RP08069 1367 aa19.88■□□□□ 0.77
LRTM1-202ENST00000493075 CEP170Q5SW79 1584 aa19.86■□□□□ 0.77
LRTM1-202ENST00000493075 JPH4Q96JJ6 628 aa19.81■□□□□ 0.76
LRTM1-202ENST00000493075 TRHP20396 242 aaPredicted RBP19.79■□□□□ 0.76
LRTM1-202ENST00000493075 SHROOM2Q13796 1616 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms