RNA–Protein interactions for RNA: ENST00000491916.1

SS18L1-204, Transcript of SS18L1, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18L1, Length 456 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18L1-204ENST00000491916 NISCHQ9Y2I1 1504 aa37.03■■■■□ 3.52
SS18L1-204ENST00000491916 CCDC180Q9P1Z9 1646 aa32.84■■■□□ 2.85
SS18L1-204ENST00000491916 ABCC9O60706 1549 aa32.09■■■□□ 2.73
SS18L1-204ENST00000491916 ZCCHC6Q5VYS8 1495 aaKnown RBP30.87■■■□□ 2.53
SS18L1-204ENST00000491916 NACADO15069 1562 aa30.86■■■□□ 2.53
SS18L1-204ENST00000491916 RB1CC1Q8TDY2 1594 aa30.85■■■□□ 2.53
SS18L1-204ENST00000491916 DCAF8L2P0C7V8 631 aa30.8■■■□□ 2.52
SS18L1-204ENST00000491916 MYO15BQ96JP2 1530 aa30.75■■■□□ 2.51
SS18L1-204ENST00000491916 DCAF1Q9Y4B6 1507 aa30.64■■■□□ 2.5
SS18L1-204ENST00000491916 UNC13AQ9UPW8 1703 aa30.24■■■□□ 2.43
SS18L1-204ENST00000491916 BICRAQ9NZM4 1560 aa30.05■■■□□ 2.4
SS18L1-204ENST00000491916 PABPN1Q86U42 306 aaKnown RBP eCLIP30.02■■■□□ 2.4
SS18L1-204ENST00000491916 SCRIBQ14160 1630 aa29.97■■■□□ 2.39
SS18L1-204ENST00000491916 SHROOM4Q9ULL8 1493 aa29.61■■■□□ 2.33
SS18L1-204ENST00000491916 DNAJC5BQ9UF47 199 aa29.54■■■□□ 2.32
SS18L1-204ENST00000491916 EIF4G1Q04637 1599 aaKnown RBP29.18■■■□□ 2.26
SS18L1-204ENST00000491916 CC2D2AQ9P2K1 1620 aa29.04■■■□□ 2.24
SS18L1-204ENST00000491916 CECR2Q9BXF3 1484 aa28.89■■■□□ 2.22
SS18L1-204ENST00000491916 SMARCA4P51532 1647 aa28.69■■■□□ 2.18
SS18L1-204ENST00000491916 BAZ1AQ9NRL2 1556 aaPredicted RBP28.64■■■□□ 2.18
SS18L1-204ENST00000491916 MROH2BQ7Z745 1585 aa28.57■■■□□ 2.16
SS18L1-204ENST00000491916 ATAD2BQ9ULI0 1458 aa28.55■■■□□ 2.16
SS18L1-204ENST00000491916 NCAPD3P42695 1498 aa28.53■■■□□ 2.16
SS18L1-204ENST00000491916 SMARCA2P51531 1590 aa28.45■■■□□ 2.15
SS18L1-204ENST00000491916 PEG3Q9GZU2 1588 aa28.45■■■□□ 2.14
SS18L1-204ENST00000491916 HMGXB3Q12766 1538 aa28.36■■■□□ 2.13
SS18L1-204ENST00000491916 RSF1Q96T23 1441 aaPredicted RBP28.26■■■□□ 2.12
SS18L1-204ENST00000491916 BAZ1BQ9UIG0 1483 aaKnown RBP28.25■■■□□ 2.11
SS18L1-204ENST00000491916 WIZO95785 1651 aa28.23■■■□□ 2.11
SS18L1-204ENST00000491916 TOP2AP11388 1531 aaKnown RBP27.91■■■□□ 2.06
SS18L1-204ENST00000491916 NESP48681 1621 aa27.84■■■□□ 2.05
SS18L1-204ENST00000491916 LAMC3Q9Y6N6 1575 aa27.71■■■□□ 2.03
SS18L1-204ENST00000491916 CADPSQ9ULU8 1353 aa27.68■■■□□ 2.02
SS18L1-204ENST00000491916 CCDC88BA6NC98 1476 aa27.63■■■□□ 2.01
SS18L1-204ENST00000491916 ERCC6Q03468 1493 aa27.57■■■□□ 2
SS18L1-204ENST00000491916 CFTRP13569 1480 aa27.55■■■□□ 2
SS18L1-204ENST00000491916 SUPT5HO00267 1087 aaKnown RBP27.5■■□□□ 1.99
SS18L1-204ENST00000491916 PDS5BQ9NTI5 1447 aa27.5■■□□□ 1.99
SS18L1-204ENST00000491916 KIF21AQ7Z4S6 1674 aa27.46■■□□□ 1.99
SS18L1-204ENST00000491916 THOC2Q8NI27 1593 aaKnown RBP27.38■■□□□ 1.97
SS18L1-204ENST00000491916 FANCD2Q9BXW9 1451 aa27.34■■□□□ 1.97
SS18L1-204ENST00000491916 CUX2O14529 1486 aa27.32■■□□□ 1.96
SS18L1-204ENST00000491916 PRDM2Q13029 1718 aa27.27■■□□□ 1.96
SS18L1-204ENST00000491916 CEP164Q9UPV0 1460 aa27.26■■□□□ 1.95
SS18L1-204ENST00000491916 MRC2Q9UBG0 1479 aa27.24■■□□□ 1.95
SS18L1-204ENST00000491916 WDR62O43379 1518 aa27.17■■□□□ 1.94
SS18L1-204ENST00000491916 URB2Q14146 1524 aaKnown RBP27.11■■□□□ 1.93
SS18L1-204ENST00000491916 TOPBP1Q92547 1522 aa26.93■■□□□ 1.9
SS18L1-204ENST00000491916 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
SS18L1-204ENST00000491916 ABCC8Q09428 1581 aa26.87■■□□□ 1.89
SS18L1-204ENST00000491916 CUX1P39880 1505 aa26.79■■□□□ 1.88
SS18L1-204ENST00000491916 POLA1P09884 1462 aaPredicted RBP26.71■■□□□ 1.87
SS18L1-204ENST00000491916 IFT140Q96RY7 1462 aa26.71■■□□□ 1.87
SS18L1-204ENST00000491916 TARBP1Q13395 1621 aaKnown RBP26.66■■□□□ 1.86
SS18L1-204ENST00000491916 ZNF608Q9ULD9 1512 aaPredicted RBP26.65■■□□□ 1.86
SS18L1-204ENST00000491916 FGD5Q6ZNL6 1462 aa26.64■■□□□ 1.86
SS18L1-204ENST00000491916 RAD54L2Q9Y4B4 1467 aa26.62■■□□□ 1.85
SS18L1-204ENST00000491916 SOGA1O94964 1423 aa26.58■■□□□ 1.85
SS18L1-204ENST00000491916 WRNQ14191 1432 aaPredicted RBP eCLIP26.57■■□□□ 1.84
SS18L1-204ENST00000491916 SYNJ1O43426 1573 aa26.55■■□□□ 1.84
SS18L1-204ENST00000491916 TOP2BQ02880 1626 aa26.54■■□□□ 1.84
SS18L1-204ENST00000491916 BIVM-ERCC5R4GMW8 1640 aa26.53■■□□□ 1.84
SS18L1-204ENST00000491916 AQRO60306 1485 aaKnown RBP eCLIP26.49■■□□□ 1.838e-9■■□□□ 14.3
SS18L1-204ENST00000491916 EIF4G3O43432 1585 aaKnown RBP26.49■■□□□ 1.83
SS18L1-204ENST00000491916 DNAJC5Q9H3Z4 198 aa26.46■■□□□ 1.83
SS18L1-204ENST00000491916 WDR97A6NE52 1622 aa26.44■■□□□ 1.82
SS18L1-204ENST00000491916 TDRD9Q8NDG6 1382 aaKnown RBP26.44■■□□□ 1.82
SS18L1-204ENST00000491916 ABCA10Q8WWZ4 1543 aa26.4■■□□□ 1.82
SS18L1-204ENST00000491916 ABCA5Q8WWZ7 1642 aa26.29■■□□□ 1.8
SS18L1-204ENST00000491916 GAPVD1Q14C86 1478 aa26.27■■□□□ 1.8
SS18L1-204ENST00000491916 GRIN2BQ13224 1484 aa26.24■■□□□ 1.79
SS18L1-204ENST00000491916 SNAPC4Q5SXM2 1469 aa26.22■■□□□ 1.79
SS18L1-204ENST00000491916 PBRM1Q86U86 1689 aa26.19■■□□□ 1.78
SS18L1-204ENST00000491916 OSCARQ8IYS5 282 aa26.19■■□□□ 1.78
SS18L1-204ENST00000491916 MAGI1Q96QZ7 1491 aaPredicted RBP26.17■■□□□ 1.78
SS18L1-204ENST00000491916 CHD1O14646 1710 aa26.14■■□□□ 1.78
SS18L1-204ENST00000491916 SYNJ2O15056 1496 aa26.07■■□□□ 1.76
SS18L1-204ENST00000491916 ERICH3Q5RHP9 1530 aa26.06■■□□□ 1.76
SS18L1-204ENST00000491916 FBLN2P98095 1184 aa26.05■■□□□ 1.76
SS18L1-204ENST00000491916 CHMP7Q8WUX9 453 aaPredicted RBP26.02■■□□□ 1.76
SS18L1-204ENST00000491916 ADAMTS12P58397 1594 aa26.02■■□□□ 1.76
SS18L1-204ENST00000491916 KIF27Q86VH2 1401 aa25.98■■□□□ 1.75
SS18L1-204ENST00000491916 IGF1RP08069 1367 aa25.97■■□□□ 1.75
SS18L1-204ENST00000491916 FHAD1B1AJZ9 1412 aa25.97■■□□□ 1.75
SS18L1-204ENST00000491916 TRIM41Q8WV44 630 aa25.95■■□□□ 1.74
SS18L1-204ENST00000491916 GRIN2AQ12879 1464 aa25.92■■□□□ 1.74
SS18L1-204ENST00000491916 CLASP1Q7Z460 1538 aa25.91■■□□□ 1.74
SS18L1-204ENST00000491916 RUSC2Q8N2Y8 1516 aa25.89■■□□□ 1.74
SS18L1-204ENST00000491916 NUP160Q12769 1436 aa25.85■■□□□ 1.73
SS18L1-204ENST00000491916 CEP170Q5SW79 1584 aa25.82■■□□□ 1.72
SS18L1-204ENST00000491916 CUL7Q14999 1698 aa25.8■■□□□ 1.72
SS18L1-204ENST00000491916 ARHGEF11O15085 1522 aa25.79■■□□□ 1.72
SS18L1-204ENST00000491916 RIMBP3CA6NJZ7 1639 aa25.79■■□□□ 1.72
SS18L1-204ENST00000491916 RIMBP3BA6NNM3 1639 aa25.79■■□□□ 1.72
SS18L1-204ENST00000491916 RIMBP3Q9UFD9 1639 aa25.79■■□□□ 1.72
SS18L1-204ENST00000491916 CHIC1Q5VXU3 224 aa25.78■■□□□ 1.72
SS18L1-204ENST00000491916 CARMIL1Q5VZK9 1371 aa25.76■■□□□ 1.71
SS18L1-204ENST00000491916 SHROOM2Q13796 1616 aa25.64■■□□□ 1.7
SS18L1-204ENST00000491916 ARAP1Q96P48 1450 aa25.62■■□□□ 1.69
SS18L1-204ENST00000491916 RAPGEF2Q9Y4G8 1499 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms