RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 NISCHQ9Y2I1 1504 aa22.66■■□□□ 1.22
BRCA1-219ENST00000491747 CCDC180Q9P1Z9 1646 aa20.14■□□□□ 0.81
BRCA1-219ENST00000491747 ABCC9O60706 1549 aa19.71■□□□□ 0.75
BRCA1-219ENST00000491747 RB1CC1Q8TDY2 1594 aa18.93■□□□□ 0.62
BRCA1-219ENST00000491747 DCAF8L2P0C7V8 631 aa18.92■□□□□ 0.62
BRCA1-219ENST00000491747 NACADO15069 1562 aa18.9■□□□□ 0.62
BRCA1-219ENST00000491747 ZCCHC6Q5VYS8 1495 aaKnown RBP18.87■□□□□ 0.61
BRCA1-219ENST00000491747 MYO15BQ96JP2 1530 aa18.78■□□□□ 0.6
BRCA1-219ENST00000491747 DCAF1Q9Y4B6 1507 aa18.72■□□□□ 0.59
BRCA1-219ENST00000491747 UNC13AQ9UPW8 1703 aa18.62■□□□□ 0.57
BRCA1-219ENST00000491747 BICRAQ9NZM4 1560 aa18.43■□□□□ 0.54
BRCA1-219ENST00000491747 PABPN1Q86U42 306 aaKnown RBP eCLIP18.42■□□□□ 0.54
BRCA1-219ENST00000491747 SCRIBQ14160 1630 aa18.41■□□□□ 0.54
BRCA1-219ENST00000491747 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
BRCA1-219ENST00000491747 SHROOM4Q9ULL8 1493 aa18.11■□□□□ 0.49
BRCA1-219ENST00000491747 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
BRCA1-219ENST00000491747 CC2D2AQ9P2K1 1620 aa17.84■□□□□ 0.45
BRCA1-219ENST00000491747 CECR2Q9BXF3 1484 aa17.69■□□□□ 0.42
BRCA1-219ENST00000491747 SMARCA4P51532 1647 aa17.6■□□□□ 0.41
BRCA1-219ENST00000491747 BAZ1AQ9NRL2 1556 aaPredicted RBP17.54■□□□□ 0.4
BRCA1-219ENST00000491747 MROH2BQ7Z745 1585 aa17.5■□□□□ 0.39
BRCA1-219ENST00000491747 ATAD2BQ9ULI0 1458 aa17.48■□□□□ 0.39
BRCA1-219ENST00000491747 NCAPD3P42695 1498 aa17.45■□□□□ 0.38
BRCA1-219ENST00000491747 SMARCA2P51531 1590 aa17.43■□□□□ 0.38
BRCA1-219ENST00000491747 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
BRCA1-219ENST00000491747 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
BRCA1-219ENST00000491747 WIZO95785 1651 aa17.33■□□□□ 0.37
BRCA1-219ENST00000491747 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
BRCA1-219ENST00000491747 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.36
BRCA1-219ENST00000491747 NESP48681 1621 aa17.09■□□□□ 0.33
BRCA1-219ENST00000491747 TOP2AP11388 1531 aaKnown RBP17.09■□□□□ 0.33
BRCA1-219ENST00000491747 LAMC3Q9Y6N6 1575 aa16.99■□□□□ 0.31
BRCA1-219ENST00000491747 ERCC6Q03468 1493 aa16.94■□□□□ 0.3
BRCA1-219ENST00000491747 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
BRCA1-219ENST00000491747 CCDC88BA6NC98 1476 aa16.91■□□□□ 0.3
BRCA1-219ENST00000491747 KIF21AQ7Z4S6 1674 aa16.91■□□□□ 0.3
BRCA1-219ENST00000491747 CFTRP13569 1480 aa16.85■□□□□ 0.29
BRCA1-219ENST00000491747 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
BRCA1-219ENST00000491747 PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
BRCA1-219ENST00000491747 THOC2Q8NI27 1593 aaKnown RBP16.82■□□□□ 0.28
BRCA1-219ENST00000491747 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
BRCA1-219ENST00000491747 CUX2O14529 1486 aa16.75■□□□□ 0.27
BRCA1-219ENST00000491747 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
BRCA1-219ENST00000491747 CEP164Q9UPV0 1460 aa16.72■□□□□ 0.27
BRCA1-219ENST00000491747 MRC2Q9UBG0 1479 aa16.7■□□□□ 0.26
BRCA1-219ENST00000491747 WDR62O43379 1518 aa16.66■□□□□ 0.26
BRCA1-219ENST00000491747 URB2Q14146 1524 aaKnown RBP16.62■□□□□ 0.25
BRCA1-219ENST00000491747 TOPBP1Q92547 1522 aa16.5■□□□□ 0.23
BRCA1-219ENST00000491747 DNMBPQ6XZF7 1577 aa16.48■□□□□ 0.23
BRCA1-219ENST00000491747 ABCC8Q09428 1581 aa16.44■□□□□ 0.22
BRCA1-219ENST00000491747 CUX1P39880 1505 aa16.4■□□□□ 0.22
BRCA1-219ENST00000491747 POLA1P09884 1462 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-219ENST00000491747 IFT140Q96RY7 1462 aa16.36■□□□□ 0.21
BRCA1-219ENST00000491747 TARBP1Q13395 1621 aaKnown RBP16.35■□□□□ 0.21
BRCA1-219ENST00000491747 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-219ENST00000491747 FGD5Q6ZNL6 1462 aa16.33■□□□□ 0.2
BRCA1-219ENST00000491747 RAD54L2Q9Y4B4 1467 aa16.32■□□□□ 0.2
BRCA1-219ENST00000491747 SOGA1O94964 1423 aa16.28■□□□□ 0.2
BRCA1-219ENST00000491747 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
BRCA1-219ENST00000491747 EIF4G3O43432 1585 aaKnown RBP16.28■□□□□ 0.2
BRCA1-219ENST00000491747 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.19
BRCA1-219ENST00000491747 WRNQ14191 1432 aaPredicted RBP eCLIP16.26■□□□□ 0.191e-6■■■■■ 58.5
BRCA1-219ENST00000491747 TOP2BQ02880 1626 aa16.25■□□□□ 0.19
BRCA1-219ENST00000491747 DNAJC5Q9H3Z4 198 aa16.25■□□□□ 0.19
BRCA1-219ENST00000491747 AQRO60306 1485 aaKnown RBP eCLIP16.24■□□□□ 0.194e-10■■■■■ 36.9
BRCA1-219ENST00000491747 WDR97A6NE52 1622 aa16.23■□□□□ 0.19
BRCA1-219ENST00000491747 TDRD9Q8NDG6 1382 aaKnown RBP16.2■□□□□ 0.18
BRCA1-219ENST00000491747 ABCA10Q8WWZ4 1543 aa16.15■□□□□ 0.18
BRCA1-219ENST00000491747 ABCA5Q8WWZ7 1642 aa16.12■□□□□ 0.17
BRCA1-219ENST00000491747 PBRM1Q86U86 1689 aa16.12■□□□□ 0.17
BRCA1-219ENST00000491747 CHD1O14646 1710 aa16.1■□□□□ 0.17
BRCA1-219ENST00000491747 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
BRCA1-219ENST00000491747 SNAPC4Q5SXM2 1469 aa16.08■□□□□ 0.16
BRCA1-219ENST00000491747 GRIN2BQ13224 1484 aa16.07■□□□□ 0.16
BRCA1-219ENST00000491747 OSCARQ8IYS5 282 aa16.06■□□□□ 0.16
BRCA1-219ENST00000491747 MAGI1Q96QZ7 1491 aaPredicted RBP16.02■□□□□ 0.16
BRCA1-219ENST00000491747 FBLN2P98095 1184 aa16.01■□□□□ 0.15
BRCA1-219ENST00000491747 SYNJ2O15056 1496 aa15.97■□□□□ 0.15
BRCA1-219ENST00000491747 ADAMTS12P58397 1594 aa15.95■□□□□ 0.14
BRCA1-219ENST00000491747 ERICH3Q5RHP9 1530 aa15.95■□□□□ 0.14
BRCA1-219ENST00000491747 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
BRCA1-219ENST00000491747 KIF27Q86VH2 1401 aa15.89■□□□□ 0.13
BRCA1-219ENST00000491747 FHAD1B1AJZ9 1412 aa15.89■□□□□ 0.13
BRCA1-219ENST00000491747 CLASP1Q7Z460 1538 aa15.89■□□□□ 0.13
BRCA1-219ENST00000491747 GRIN2AQ12879 1464 aa15.88■□□□□ 0.13
BRCA1-219ENST00000491747 RIMBP3CA6NJZ7 1639 aa15.87■□□□□ 0.13
BRCA1-219ENST00000491747 RIMBP3BA6NNM3 1639 aa15.87■□□□□ 0.13
BRCA1-219ENST00000491747 RIMBP3Q9UFD9 1639 aa15.87■□□□□ 0.13
BRCA1-219ENST00000491747 IGF1RP08069 1367 aa15.87■□□□□ 0.13
BRCA1-219ENST00000491747 TRIM41Q8WV44 630 aa15.87■□□□□ 0.13
BRCA1-219ENST00000491747 RUSC2Q8N2Y8 1516 aa15.86■□□□□ 0.13
BRCA1-219ENST00000491747 CEP170Q5SW79 1584 aa15.85■□□□□ 0.13
BRCA1-219ENST00000491747 ARHGEF11O15085 1522 aa15.84■□□□□ 0.13
BRCA1-219ENST00000491747 CUL7Q14999 1698 aa15.82■□□□□ 0.12
BRCA1-219ENST00000491747 NUP160Q12769 1436 aa15.81■□□□□ 0.12
BRCA1-219ENST00000491747 CARMIL1Q5VZK9 1371 aa15.76■□□□□ 0.11
BRCA1-219ENST00000491747 CHIC1Q5VXU3 224 aa15.73■□□□□ 0.11
BRCA1-219ENST00000491747 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
BRCA1-219ENST00000491747 ARAP1Q96P48 1450 aa15.72■□□□□ 0.11
BRCA1-219ENST00000491747 ERCC6L2Q5T890 1561 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms