RNA–Protein interactions for RNA: ENST00000491502.1

NUP188-208, Transcript of nucleoporin 188, humanhuman

TSL 3

Gene NUP188, Length 534 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-208ENST00000491502 NISCHQ9Y2I1 1504 aa32.04■■■□□ 2.72
NUP188-208ENST00000491502 CCDC180Q9P1Z9 1646 aa28.54■■■□□ 2.16
NUP188-208ENST00000491502 ABCC9O60706 1549 aa28.07■■■□□ 2.08
NUP188-208ENST00000491502 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
NUP188-208ENST00000491502 NACADO15069 1562 aa26.92■■□□□ 1.9
NUP188-208ENST00000491502 DCAF8L2P0C7V8 631 aa26.9■■□□□ 1.9
NUP188-208ENST00000491502 MYO15BQ96JP2 1530 aa26.72■■□□□ 1.87
NUP188-208ENST00000491502 ZCCHC6Q5VYS8 1495 aaKnown RBP26.63■■□□□ 1.85
NUP188-208ENST00000491502 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
NUP188-208ENST00000491502 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
NUP188-208ENST00000491502 PABPN1Q86U42 306 aaKnown RBP eCLIP26.23■■□□□ 1.79
NUP188-208ENST00000491502 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
NUP188-208ENST00000491502 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
NUP188-208ENST00000491502 DNAJC5BQ9UF47 199 aa25.91■■□□□ 1.74
NUP188-208ENST00000491502 SHROOM4Q9ULL8 1493 aa25.9■■□□□ 1.74
NUP188-208ENST00000491502 EIF4G1Q04637 1599 aaKnown RBP25.44■■□□□ 1.66
NUP188-208ENST00000491502 CC2D2AQ9P2K1 1620 aa25.37■■□□□ 1.65
NUP188-208ENST00000491502 CECR2Q9BXF3 1484 aa25.26■■□□□ 1.63
NUP188-208ENST00000491502 SMARCA4P51532 1647 aa24.87■■□□□ 1.57
NUP188-208ENST00000491502 BAZ1AQ9NRL2 1556 aaPredicted RBP24.86■■□□□ 1.57
NUP188-208ENST00000491502 NCAPD3P42695 1498 aa24.84■■□□□ 1.57
NUP188-208ENST00000491502 ATAD2BQ9ULI0 1458 aa24.81■■□□□ 1.56
NUP188-208ENST00000491502 SMARCA2P51531 1590 aa24.79■■□□□ 1.56
NUP188-208ENST00000491502 HMGXB3Q12766 1538 aa24.67■■□□□ 1.54
NUP188-208ENST00000491502 MROH2BQ7Z745 1585 aa24.66■■□□□ 1.54
NUP188-208ENST00000491502 PEG3Q9GZU2 1588 aa24.65■■□□□ 1.54
NUP188-208ENST00000491502 BAZ1BQ9UIG0 1483 aaKnown RBP24.59■■□□□ 1.53
NUP188-208ENST00000491502 WIZO95785 1651 aa24.37■■□□□ 1.49
NUP188-208ENST00000491502 RSF1Q96T23 1441 aaPredicted RBP24.35■■□□□ 1.49
NUP188-208ENST00000491502 ERCC6Q03468 1493 aa24.24■■□□□ 1.47
NUP188-208ENST00000491502 NESP48681 1621 aa24.22■■□□□ 1.47
NUP188-208ENST00000491502 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
NUP188-208ENST00000491502 TOP2AP11388 1531 aaKnown RBP24.13■■□□□ 1.45
NUP188-208ENST00000491502 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
NUP188-208ENST00000491502 PDS5BQ9NTI5 1447 aa24.08■■□□□ 1.44
NUP188-208ENST00000491502 CUX2O14529 1486 aa24.06■■□□□ 1.44
NUP188-208ENST00000491502 CFTRP13569 1480 aa23.92■■□□□ 1.42
NUP188-208ENST00000491502 KIF21AQ7Z4S6 1674 aa23.91■■□□□ 1.42
NUP188-208ENST00000491502 CCDC88BA6NC98 1476 aa23.87■■□□□ 1.41
NUP188-208ENST00000491502 THOC2Q8NI27 1593 aaKnown RBP23.87■■□□□ 1.41
NUP188-208ENST00000491502 FANCD2Q9BXW9 1451 aa23.81■■□□□ 1.4
NUP188-208ENST00000491502 CEP164Q9UPV0 1460 aa23.8■■□□□ 1.4
NUP188-208ENST00000491502 MRC2Q9UBG0 1479 aa23.79■■□□□ 1.4
NUP188-208ENST00000491502 SUPT5HO00267 1087 aaKnown RBP23.73■■□□□ 1.39
NUP188-208ENST00000491502 WDR62O43379 1518 aa23.69■■□□□ 1.38
NUP188-208ENST00000491502 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
NUP188-208ENST00000491502 URB2Q14146 1524 aaKnown RBP23.55■■□□□ 1.36
NUP188-208ENST00000491502 DNAJC5Q9H3Z4 198 aa23.53■■□□□ 1.36
NUP188-208ENST00000491502 ABCC8Q09428 1581 aa23.47■■□□□ 1.35
NUP188-208ENST00000491502 TOPBP1Q92547 1522 aa23.4■■□□□ 1.34
NUP188-208ENST00000491502 DNMBPQ6XZF7 1577 aa23.35■■□□□ 1.33
NUP188-208ENST00000491502 IFT140Q96RY7 1462 aa23.32■■□□□ 1.32
NUP188-208ENST00000491502 POLA1P09884 1462 aaPredicted RBP23.18■■□□□ 1.3
NUP188-208ENST00000491502 ZNF608Q9ULD9 1512 aaPredicted RBP23.17■■□□□ 1.3
NUP188-208ENST00000491502 CUX1P39880 1505 aa23.14■■□□□ 1.3
NUP188-208ENST00000491502 SOGA1O94964 1423 aa23.14■■□□□ 1.29
NUP188-208ENST00000491502 TARBP1Q13395 1621 aaKnown RBP23.13■■□□□ 1.29
NUP188-208ENST00000491502 FGD5Q6ZNL6 1462 aa23.11■■□□□ 1.29
NUP188-208ENST00000491502 OSCARQ8IYS5 282 aa23.09■■□□□ 1.29
NUP188-208ENST00000491502 RAD54L2Q9Y4B4 1467 aa23.08■■□□□ 1.29
NUP188-208ENST00000491502 EIF4G3O43432 1585 aaKnown RBP23.06■■□□□ 1.28
NUP188-208ENST00000491502 AQRO60306 1485 aaKnown RBP eCLIP23.05■■□□□ 1.281e-6■■■■■ 62.4
NUP188-208ENST00000491502 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
NUP188-208ENST00000491502 WDR97A6NE52 1622 aa23■■□□□ 1.27
NUP188-208ENST00000491502 WRNQ14191 1432 aaPredicted RBP eCLIP22.99■■□□□ 1.27
NUP188-208ENST00000491502 TOP2BQ02880 1626 aa22.92■■□□□ 1.26
NUP188-208ENST00000491502 BIVM-ERCC5R4GMW8 1640 aa22.91■■□□□ 1.26
NUP188-208ENST00000491502 ABCA10Q8WWZ4 1543 aa22.9■■□□□ 1.26
NUP188-208ENST00000491502 GRIN2BQ13224 1484 aa22.87■■□□□ 1.25
NUP188-208ENST00000491502 SYNJ1O43426 1573 aa22.87■■□□□ 1.25
NUP188-208ENST00000491502 FBLN2P98095 1184 aa22.86■■□□□ 1.25
NUP188-208ENST00000491502 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
NUP188-208ENST00000491502 MAGI1Q96QZ7 1491 aaPredicted RBP22.82■■□□□ 1.24
NUP188-208ENST00000491502 SNAPC4Q5SXM2 1469 aa22.81■■□□□ 1.24
NUP188-208ENST00000491502 CHMP7Q8WUX9 453 aaPredicted RBP22.8■■□□□ 1.24
NUP188-208ENST00000491502 CHD1O14646 1710 aa22.79■■□□□ 1.24
NUP188-208ENST00000491502 ABCA5Q8WWZ7 1642 aa22.77■■□□□ 1.24
NUP188-208ENST00000491502 PBRM1Q86U86 1689 aa22.74■■□□□ 1.23
NUP188-208ENST00000491502 SYNJ2O15056 1496 aa22.73■■□□□ 1.23
NUP188-208ENST00000491502 TRIM41Q8WV44 630 aa22.66■■□□□ 1.22
NUP188-208ENST00000491502 ERICH3Q5RHP9 1530 aa22.63■■□□□ 1.21
NUP188-208ENST00000491502 CHIC1Q5VXU3 224 aa22.63■■□□□ 1.21
NUP188-208ENST00000491502 RIMBP3CA6NJZ7 1639 aa22.61■■□□□ 1.21
NUP188-208ENST00000491502 RIMBP3BA6NNM3 1639 aa22.61■■□□□ 1.21
NUP188-208ENST00000491502 RIMBP3Q9UFD9 1639 aa22.61■■□□□ 1.21
NUP188-208ENST00000491502 ARHGEF11O15085 1522 aa22.61■■□□□ 1.21
NUP188-208ENST00000491502 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
NUP188-208ENST00000491502 CLASP1Q7Z460 1538 aa22.57■■□□□ 1.2
NUP188-208ENST00000491502 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
NUP188-208ENST00000491502 GRIN2AQ12879 1464 aa22.55■■□□□ 1.2
NUP188-208ENST00000491502 KIF27Q86VH2 1401 aa22.54■■□□□ 1.2
NUP188-208ENST00000491502 CYB5RLQ6IPT4 315 aa22.48■■□□□ 1.19
NUP188-208ENST00000491502 IGF1RP08069 1367 aa22.47■■□□□ 1.19
NUP188-208ENST00000491502 NUP160Q12769 1436 aa22.47■■□□□ 1.19
NUP188-208ENST00000491502 ARAP1Q96P48 1450 aa22.41■■□□□ 1.18
NUP188-208ENST00000491502 CEP170Q5SW79 1584 aa22.4■■□□□ 1.18
NUP188-208ENST00000491502 CUL7Q14999 1698 aa22.38■■□□□ 1.17
NUP188-208ENST00000491502 CARMIL1Q5VZK9 1371 aa22.34■■□□□ 1.17
NUP188-208ENST00000491502 JPH4Q96JJ6 628 aa22.3■■□□□ 1.16
NUP188-208ENST00000491502 SHROOM2Q13796 1616 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms