RNA–Protein interactions for RNA: ENST00000490387.1

RAPGEF3-212, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 699 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-212ENST00000490387 NISCHQ9Y2I1 1504 aa41.12■■■■■ 4.17
RAPGEF3-212ENST00000490387 CCDC180Q9P1Z9 1646 aa36.81■■■■□ 3.48
RAPGEF3-212ENST00000490387 ABCC9O60706 1549 aa36.45■■■■□ 3.43
RAPGEF3-212ENST00000490387 RB1CC1Q8TDY2 1594 aa34.87■■■■□ 3.17
RAPGEF3-212ENST00000490387 NACADO15069 1562 aa34.69■■■■□ 3.14
RAPGEF3-212ENST00000490387 DCAF8L2P0C7V8 631 aa34.58■■■■□ 3.13
RAPGEF3-212ENST00000490387 MYO15BQ96JP2 1530 aa34.3■■■■□ 3.08
RAPGEF3-212ENST00000490387 ZCCHC6Q5VYS8 1495 aaKnown RBP34.16■■■■□ 3.06
RAPGEF3-212ENST00000490387 UNC13AQ9UPW8 1703 aa34.11■■■■□ 3.05
RAPGEF3-212ENST00000490387 DCAF1Q9Y4B6 1507 aa33.98■■■■□ 3.03
RAPGEF3-212ENST00000490387 PABPN1Q86U42 306 aaKnown RBP eCLIP33.96■■■■□ 3.03
RAPGEF3-212ENST00000490387 DNAJC5BQ9UF47 199 aa33.82■■■■□ 3
RAPGEF3-212ENST00000490387 BICRAQ9NZM4 1560 aa33.8■■■■□ 3
RAPGEF3-212ENST00000490387 SCRIBQ14160 1630 aa33.56■■■□□ 2.96
RAPGEF3-212ENST00000490387 SHROOM4Q9ULL8 1493 aa33.4■■■□□ 2.94
RAPGEF3-212ENST00000490387 EIF4G1Q04637 1599 aaKnown RBP32.96■■■□□ 2.87
RAPGEF3-212ENST00000490387 CC2D2AQ9P2K1 1620 aa32.96■■■□□ 2.87
RAPGEF3-212ENST00000490387 CECR2Q9BXF3 1484 aa32.8■■■□□ 2.84
RAPGEF3-212ENST00000490387 SMARCA4P51532 1647 aa32.04■■■□□ 2.72
RAPGEF3-212ENST00000490387 NCAPD3P42695 1498 aa31.98■■■□□ 2.71
RAPGEF3-212ENST00000490387 ATAD2BQ9ULI0 1458 aa31.95■■■□□ 2.7
RAPGEF3-212ENST00000490387 BAZ1AQ9NRL2 1556 aaPredicted RBP31.92■■■□□ 2.7
RAPGEF3-212ENST00000490387 SMARCA2P51531 1590 aa31.91■■■□□ 2.7
RAPGEF3-212ENST00000490387 HMGXB3Q12766 1538 aa31.81■■■□□ 2.68
RAPGEF3-212ENST00000490387 PEG3Q9GZU2 1588 aa31.69■■■□□ 2.66
RAPGEF3-212ENST00000490387 BAZ1BQ9UIG0 1483 aaKnown RBP31.69■■■□□ 2.66
RAPGEF3-212ENST00000490387 MROH2BQ7Z745 1585 aa31.68■■■□□ 2.66
RAPGEF3-212ENST00000490387 ERCC6Q03468 1493 aa31.48■■■□□ 2.63
RAPGEF3-212ENST00000490387 NESP48681 1621 aa31.39■■■□□ 2.62
RAPGEF3-212ENST00000490387 WIZO95785 1651 aa31.35■■■□□ 2.61
RAPGEF3-212ENST00000490387 CUX2O14529 1486 aa31.29■■■□□ 2.6
RAPGEF3-212ENST00000490387 LAMC3Q9Y6N6 1575 aa31.26■■■□□ 2.59
RAPGEF3-212ENST00000490387 RSF1Q96T23 1441 aaPredicted RBP31.23■■■□□ 2.59
RAPGEF3-212ENST00000490387 KIF21AQ7Z4S6 1674 aa31.06■■■□□ 2.56
RAPGEF3-212ENST00000490387 PDS5BQ9NTI5 1447 aa31.05■■■□□ 2.56
RAPGEF3-212ENST00000490387 THOC2Q8NI27 1593 aaKnown RBP31.04■■■□□ 2.56
RAPGEF3-212ENST00000490387 CADPSQ9ULU8 1353 aa31.04■■■□□ 2.56
RAPGEF3-212ENST00000490387 TOP2AP11388 1531 aaKnown RBP30.98■■■□□ 2.55
RAPGEF3-212ENST00000490387 DNAJC5Q9H3Z4 198 aa30.84■■■□□ 2.53
RAPGEF3-212ENST00000490387 MRC2Q9UBG0 1479 aa30.77■■■□□ 2.52
RAPGEF3-212ENST00000490387 CFTRP13569 1480 aa30.76■■■□□ 2.51
RAPGEF3-212ENST00000490387 CEP164Q9UPV0 1460 aa30.73■■■□□ 2.51
RAPGEF3-212ENST00000490387 FANCD2Q9BXW9 1451 aa30.7■■■□□ 2.51
RAPGEF3-212ENST00000490387 WDR62O43379 1518 aa30.69■■■□□ 2.5
RAPGEF3-212ENST00000490387 SUPT5HO00267 1087 aaKnown RBP30.65■■■□□ 2.5
RAPGEF3-212ENST00000490387 CCDC88BA6NC98 1476 aa30.59■■■□□ 2.49
RAPGEF3-212ENST00000490387 PRDM2Q13029 1718 aa30.58■■■□□ 2.49
RAPGEF3-212ENST00000490387 URB2Q14146 1524 aaKnown RBP30.42■■■□□ 2.46
RAPGEF3-212ENST00000490387 TOPBP1Q92547 1522 aa30.17■■■□□ 2.42
RAPGEF3-212ENST00000490387 ABCC8Q09428 1581 aa30.12■■■□□ 2.41
RAPGEF3-212ENST00000490387 DNMBPQ6XZF7 1577 aa30.1■■■□□ 2.41
RAPGEF3-212ENST00000490387 IFT140Q96RY7 1462 aa30.09■■■□□ 2.41
RAPGEF3-212ENST00000490387 ZNF608Q9ULD9 1512 aaPredicted RBP29.99■■■□□ 2.39
RAPGEF3-212ENST00000490387 OSCARQ8IYS5 282 aa29.89■■■□□ 2.38
RAPGEF3-212ENST00000490387 EIF4G3O43432 1585 aaKnown RBP29.89■■■□□ 2.38
RAPGEF3-212ENST00000490387 POLA1P09884 1462 aaPredicted RBP29.87■■■□□ 2.37
RAPGEF3-212ENST00000490387 TARBP1Q13395 1621 aaKnown RBP29.87■■■□□ 2.37
RAPGEF3-212ENST00000490387 CUX1P39880 1505 aa29.76■■■□□ 2.35
RAPGEF3-212ENST00000490387 AQRO60306 1485 aaKnown RBP eCLIP29.75■■■□□ 2.35
RAPGEF3-212ENST00000490387 FGD5Q6ZNL6 1462 aa29.74■■■□□ 2.35
RAPGEF3-212ENST00000490387 RAD54L2Q9Y4B4 1467 aa29.74■■■□□ 2.35
RAPGEF3-212ENST00000490387 SOGA1O94964 1423 aa29.73■■■□□ 2.35
RAPGEF3-212ENST00000490387 TRIM41Q8WV44 630 aa29.68■■■□□ 2.34
RAPGEF3-212ENST00000490387 CHD1O14646 1710 aa29.62■■■□□ 2.33
RAPGEF3-212ENST00000490387 WDR97A6NE52 1622 aa29.62■■■□□ 2.33
RAPGEF3-212ENST00000490387 TDRD9Q8NDG6 1382 aaKnown RBP29.62■■■□□ 2.33
RAPGEF3-212ENST00000490387 FBLN2P98095 1184 aa29.52■■■□□ 2.32
RAPGEF3-212ENST00000490387 RIMBP3CA6NJZ7 1639 aa29.51■■■□□ 2.31
RAPGEF3-212ENST00000490387 RIMBP3BA6NNM3 1639 aa29.51■■■□□ 2.31
RAPGEF3-212ENST00000490387 RIMBP3Q9UFD9 1639 aa29.51■■■□□ 2.31
RAPGEF3-212ENST00000490387 SNAPC4Q5SXM2 1469 aa29.5■■■□□ 2.31
RAPGEF3-212ENST00000490387 GRIN2BQ13224 1484 aa29.46■■■□□ 2.31
RAPGEF3-212ENST00000490387 MAGI1Q96QZ7 1491 aaPredicted RBP29.43■■■□□ 2.3
RAPGEF3-212ENST00000490387 ARHGEF11O15085 1522 aa29.43■■■□□ 2.3
RAPGEF3-212ENST00000490387 PBRM1Q86U86 1689 aa29.42■■■□□ 2.3
RAPGEF3-212ENST00000490387 ABCA10Q8WWZ4 1543 aa29.41■■■□□ 2.3
RAPGEF3-212ENST00000490387 BIVM-ERCC5R4GMW8 1640 aa29.4■■■□□ 2.3
RAPGEF3-212ENST00000490387 GAPVD1Q14C86 1478 aa29.4■■■□□ 2.3
RAPGEF3-212ENST00000490387 WRNQ14191 1432 aaPredicted RBP eCLIP29.39■■■□□ 2.3
RAPGEF3-212ENST00000490387 TOP2BQ02880 1626 aa29.39■■■□□ 2.3
RAPGEF3-212ENST00000490387 SYNJ1O43426 1573 aa29.36■■■□□ 2.29
RAPGEF3-212ENST00000490387 ABCA5Q8WWZ7 1642 aa29.36■■■□□ 2.29
RAPGEF3-212ENST00000490387 CHMP7Q8WUX9 453 aaPredicted RBP29.35■■■□□ 2.29
RAPGEF3-212ENST00000490387 SYNJ2O15056 1496 aa29.32■■■□□ 2.28
RAPGEF3-212ENST00000490387 CLASP1Q7Z460 1538 aa29.24■■■□□ 2.27
RAPGEF3-212ENST00000490387 CYB5RLQ6IPT4 315 aa29.17■■■□□ 2.26
RAPGEF3-212ENST00000490387 ARAP1Q96P48 1450 aa29.16■■■□□ 2.26
RAPGEF3-212ENST00000490387 ADAMTS12P58397 1594 aa29.13■■■□□ 2.25
RAPGEF3-212ENST00000490387 GRIN2AQ12879 1464 aa29.07■■■□□ 2.24
RAPGEF3-212ENST00000490387 ERICH3Q5RHP9 1530 aa29.06■■■□□ 2.24
RAPGEF3-212ENST00000490387 FHAD1B1AJZ9 1412 aa29.03■■■□□ 2.24
RAPGEF3-212ENST00000490387 CEP170Q5SW79 1584 aa28.96■■■□□ 2.23
RAPGEF3-212ENST00000490387 CHIC1Q5VXU3 224 aa28.96■■■□□ 2.23
RAPGEF3-212ENST00000490387 NUP160Q12769 1436 aa28.94■■■□□ 2.22
RAPGEF3-212ENST00000490387 KIF27Q86VH2 1401 aa28.82■■■□□ 2.2
RAPGEF3-212ENST00000490387 SHROOM2Q13796 1616 aa28.8■■■□□ 2.2
RAPGEF3-212ENST00000490387 ERCC6L2Q5T890 1561 aa28.8■■■□□ 2.2
RAPGEF3-212ENST00000490387 TRHP20396 242 aaPredicted RBP28.77■■■□□ 2.2
RAPGEF3-212ENST00000490387 CUL7Q14999 1698 aa28.74■■■□□ 2.19
RAPGEF3-212ENST00000490387 IGF1RP08069 1367 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms