RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, humanhuman

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-206ENST00000490101 NISCHQ9Y2I1 1504 aa43.58■■■■■ 4.57
SRM-206ENST00000490101 ABCC9O60706 1549 aa39.06■■■■□ 3.84
SRM-206ENST00000490101 CCDC180Q9P1Z9 1646 aa39.06■■■■□ 3.84
SRM-206ENST00000490101 RB1CC1Q8TDY2 1594 aa37.17■■■■□ 3.54
SRM-206ENST00000490101 NACADO15069 1562 aa36.9■■■■□ 3.5
SRM-206ENST00000490101 DCAF8L2P0C7V8 631 aa36.86■■■■□ 3.49
SRM-206ENST00000490101 DNAJC5BQ9UF47 199 aa36.53■■■■□ 3.44
SRM-206ENST00000490101 PABPN1Q86U42 306 aaKnown RBP eCLIP36.39■■■■□ 3.42
SRM-206ENST00000490101 MYO15BQ96JP2 1530 aa36.36■■■■□ 3.41
SRM-206ENST00000490101 UNC13AQ9UPW8 1703 aa36.34■■■■□ 3.41
SRM-206ENST00000490101 ZCCHC6Q5VYS8 1495 aaKnown RBP36.13■■■■□ 3.37
SRM-206ENST00000490101 BICRAQ9NZM4 1560 aa36.07■■■■□ 3.37
SRM-206ENST00000490101 DCAF1Q9Y4B6 1507 aa35.94■■■■□ 3.34
SRM-206ENST00000490101 SCRIBQ14160 1630 aa35.68■■■■□ 3.3
SRM-206ENST00000490101 SHROOM4Q9ULL8 1493 aa35.54■■■■□ 3.28
SRM-206ENST00000490101 CC2D2AQ9P2K1 1620 aa35.26■■■■□ 3.24
SRM-206ENST00000490101 EIF4G1Q04637 1599 aaKnown RBP35.2■■■■□ 3.23
SRM-206ENST00000490101 CECR2Q9BXF3 1484 aa35.16■■■■□ 3.22
SRM-206ENST00000490101 NCAPD3P42695 1498 aa34.05■■■■□ 3.04
SRM-206ENST00000490101 SMARCA4P51532 1647 aa34■■■■□ 3.03
SRM-206ENST00000490101 ATAD2BQ9ULI0 1458 aa33.99■■■■□ 3.03
SRM-206ENST00000490101 SMARCA2P51531 1590 aa33.9■■■■□ 3.02
SRM-206ENST00000490101 BAZ1AQ9NRL2 1556 aaPredicted RBP33.83■■■■□ 3.01
SRM-206ENST00000490101 HMGXB3Q12766 1538 aa33.83■■■■□ 3.01
SRM-206ENST00000490101 ERCC6Q03468 1493 aa33.73■■■□□ 2.99
SRM-206ENST00000490101 BAZ1BQ9UIG0 1483 aaKnown RBP33.7■■■□□ 2.99
SRM-206ENST00000490101 MROH2BQ7Z745 1585 aa33.61■■■□□ 2.97
SRM-206ENST00000490101 PEG3Q9GZU2 1588 aa33.6■■■□□ 2.97
SRM-206ENST00000490101 NESP48681 1621 aa33.57■■■□□ 2.97
SRM-206ENST00000490101 CUX2O14529 1486 aa33.56■■■□□ 2.96
SRM-206ENST00000490101 DNAJC5Q9H3Z4 198 aa33.45■■■□□ 2.95
SRM-206ENST00000490101 LAMC3Q9Y6N6 1575 aa33.3■■■□□ 2.92
SRM-206ENST00000490101 WIZO95785 1651 aa33.23■■■□□ 2.91
SRM-206ENST00000490101 THOC2Q8NI27 1593 aaKnown RBP33.19■■■□□ 2.9
SRM-206ENST00000490101 KIF21AQ7Z4S6 1674 aa33.14■■■□□ 2.9
SRM-206ENST00000490101 PDS5BQ9NTI5 1447 aa33.11■■■□□ 2.89
SRM-206ENST00000490101 CADPSQ9ULU8 1353 aa33.05■■■□□ 2.88
SRM-206ENST00000490101 RSF1Q96T23 1441 aaPredicted RBP32.93■■■□□ 2.86
SRM-206ENST00000490101 MRC2Q9UBG0 1479 aa32.84■■■□□ 2.85
SRM-206ENST00000490101 TOP2AP11388 1531 aaKnown RBP32.78■■■□□ 2.84
SRM-206ENST00000490101 WDR62O43379 1518 aa32.74■■■□□ 2.83
SRM-206ENST00000490101 CEP164Q9UPV0 1460 aa32.74■■■□□ 2.83
SRM-206ENST00000490101 FANCD2Q9BXW9 1451 aa32.7■■■□□ 2.83
SRM-206ENST00000490101 CFTRP13569 1480 aa32.68■■■□□ 2.82
SRM-206ENST00000490101 URB2Q14146 1524 aaKnown RBP32.43■■■□□ 2.78
SRM-206ENST00000490101 CCDC88BA6NC98 1476 aa32.42■■■□□ 2.78
SRM-206ENST00000490101 PRDM2Q13029 1718 aa32.37■■■□□ 2.77
SRM-206ENST00000490101 SUPT5HO00267 1087 aaKnown RBP32.3■■■□□ 2.76
SRM-206ENST00000490101 TRIM41Q8WV44 630 aa32.14■■■□□ 2.74
SRM-206ENST00000490101 TOPBP1Q92547 1522 aa32.09■■■□□ 2.73
SRM-206ENST00000490101 IFT140Q96RY7 1462 aa32.06■■■□□ 2.72
SRM-206ENST00000490101 OSCARQ8IYS5 282 aa32.06■■■□□ 2.72
SRM-206ENST00000490101 ZNF608Q9ULD9 1512 aaPredicted RBP32.03■■■□□ 2.72
SRM-206ENST00000490101 ABCC8Q09428 1581 aa31.98■■■□□ 2.71
SRM-206ENST00000490101 DNMBPQ6XZF7 1577 aa31.98■■■□□ 2.71
SRM-206ENST00000490101 EIF4G3O43432 1585 aaKnown RBP31.86■■■□□ 2.69
SRM-206ENST00000490101 TARBP1Q13395 1621 aaKnown RBP31.79■■■□□ 2.68
SRM-206ENST00000490101 POLA1P09884 1462 aaPredicted RBP31.77■■■□□ 2.68
SRM-206ENST00000490101 AQRO60306 1485 aaKnown RBP eCLIP31.75■■■□□ 2.673e-10■■■■□ 22.4
SRM-206ENST00000490101 RAD54L2Q9Y4B4 1467 aa31.68■■■□□ 2.66
SRM-206ENST00000490101 RIMBP3CA6NJZ7 1639 aa31.67■■■□□ 2.66
SRM-206ENST00000490101 RIMBP3BA6NNM3 1639 aa31.67■■■□□ 2.66
SRM-206ENST00000490101 RIMBP3Q9UFD9 1639 aa31.67■■■□□ 2.66
SRM-206ENST00000490101 SOGA1O94964 1423 aa31.63■■■□□ 2.65
SRM-206ENST00000490101 CHD1O14646 1710 aa31.62■■■□□ 2.65
SRM-206ENST00000490101 FGD5Q6ZNL6 1462 aa31.59■■■□□ 2.65
SRM-206ENST00000490101 FBLN2P98095 1184 aa31.59■■■□□ 2.65
SRM-206ENST00000490101 TDRD9Q8NDG6 1382 aaKnown RBP31.58■■■□□ 2.65
SRM-206ENST00000490101 CUX1P39880 1505 aa31.58■■■□□ 2.65
SRM-206ENST00000490101 ARHGEF11O15085 1522 aa31.57■■■□□ 2.64
SRM-206ENST00000490101 SNAPC4Q5SXM2 1469 aa31.44■■■□□ 2.62
SRM-206ENST00000490101 WDR97A6NE52 1622 aa31.42■■■□□ 2.62
SRM-206ENST00000490101 CYB5RLQ6IPT4 315 aa31.36■■■□□ 2.61
SRM-206ENST00000490101 GRIN2BQ13224 1484 aa31.33■■■□□ 2.61
SRM-206ENST00000490101 CHMP7Q8WUX9 453 aaPredicted RBP31.32■■■□□ 2.6
SRM-206ENST00000490101 MAGI1Q96QZ7 1491 aaPredicted RBP31.32■■■□□ 2.6
SRM-206ENST00000490101 ARAP1Q96P48 1450 aa31.27■■■□□ 2.6
SRM-206ENST00000490101 GAPVD1Q14C86 1478 aa31.25■■■□□ 2.59
SRM-206ENST00000490101 PBRM1Q86U86 1689 aa31.25■■■□□ 2.59
SRM-206ENST00000490101 SYNJ1O43426 1573 aa31.22■■■□□ 2.59
SRM-206ENST00000490101 SYNJ2O15056 1496 aa31.22■■■□□ 2.59
SRM-206ENST00000490101 CLASP1Q7Z460 1538 aa31.21■■■□□ 2.59
SRM-206ENST00000490101 ABCA10Q8WWZ4 1543 aa31.2■■■□□ 2.59
SRM-206ENST00000490101 ABCA5Q8WWZ7 1642 aa31.16■■■□□ 2.58
SRM-206ENST00000490101 WRNQ14191 1432 aaPredicted RBP eCLIP31.11■■■□□ 2.57
SRM-206ENST00000490101 TOP2BQ02880 1626 aa31.08■■■□□ 2.57
SRM-206ENST00000490101 BIVM-ERCC5R4GMW8 1640 aa31.08■■■□□ 2.57
SRM-206ENST00000490101 TRHP20396 242 aaPredicted RBP31.02■■■□□ 2.56
SRM-206ENST00000490101 ADAMTS12P58397 1594 aa30.95■■■□□ 2.54
SRM-206ENST00000490101 GRIN2AQ12879 1464 aa30.94■■■□□ 2.54
SRM-206ENST00000490101 FHAD1B1AJZ9 1412 aa30.84■■■□□ 2.53
SRM-206ENST00000490101 CEP170Q5SW79 1584 aa30.83■■■□□ 2.53
SRM-206ENST00000490101 ERICH3Q5RHP9 1530 aa30.81■■■□□ 2.52
SRM-206ENST00000490101 NUP160Q12769 1436 aa30.81■■■□□ 2.52
SRM-206ENST00000490101 ERCC6L2Q5T890 1561 aa30.78■■■□□ 2.52
SRM-206ENST00000490101 CHIC1Q5VXU3 224 aa30.76■■■□□ 2.51
SRM-206ENST00000490101 SHROOM2Q13796 1616 aa30.66■■■□□ 2.5
SRM-206ENST00000490101 PRG4Q92954 1404 aaPredicted RBP30.55■■■□□ 2.48
SRM-206ENST00000490101 RUSC2Q8N2Y8 1516 aa30.51■■■□□ 2.47
SRM-206ENST00000490101 JPH4Q96JJ6 628 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms