RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	NISCH	Q9Y2I1	1504 aa		43.58	■■■■■ 4.57
SRM-206	ENST00000490101	ABCC9	O60706	1549 aa		39.06	■■■■□ 3.84
SRM-206	ENST00000490101	CCDC180	Q9P1Z9	1646 aa		39.06	■■■■□ 3.84
SRM-206	ENST00000490101	RB1CC1	Q8TDY2	1594 aa		37.17	■■■■□ 3.54
SRM-206	ENST00000490101	NACAD	O15069	1562 aa		36.9	■■■■□ 3.5
SRM-206	ENST00000490101	DCAF8L2	P0C7V8	631 aa		36.86	■■■■□ 3.49
SRM-206	ENST00000490101	DNAJC5B	Q9UF47	199 aa		36.53	■■■■□ 3.44
SRM-206	ENST00000490101	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.39	■■■■□ 3.42
SRM-206	ENST00000490101	MYO15B	Q96JP2	1530 aa		36.36	■■■■□ 3.41
SRM-206	ENST00000490101	UNC13A	Q9UPW8	1703 aa		36.34	■■■■□ 3.41
SRM-206	ENST00000490101	ZCCHC6	Q5VYS8	1495 aa	Known RBP	36.13	■■■■□ 3.37
SRM-206	ENST00000490101	BICRA	Q9NZM4	1560 aa		36.07	■■■■□ 3.37
SRM-206	ENST00000490101	DCAF1	Q9Y4B6	1507 aa		35.94	■■■■□ 3.34
SRM-206	ENST00000490101	SCRIB	Q14160	1630 aa		35.68	■■■■□ 3.3
SRM-206	ENST00000490101	SHROOM4	Q9ULL8	1493 aa		35.54	■■■■□ 3.28
SRM-206	ENST00000490101	CC2D2A	Q9P2K1	1620 aa		35.26	■■■■□ 3.24
SRM-206	ENST00000490101	EIF4G1	Q04637	1599 aa	Known RBP	35.2	■■■■□ 3.23
SRM-206	ENST00000490101	CECR2	Q9BXF3	1484 aa		35.16	■■■■□ 3.22
SRM-206	ENST00000490101	NCAPD3	P42695	1498 aa		34.05	■■■■□ 3.04
SRM-206	ENST00000490101	SMARCA4	P51532	1647 aa		34	■■■■□ 3.03
SRM-206	ENST00000490101	ATAD2B	Q9ULI0	1458 aa		33.99	■■■■□ 3.03
SRM-206	ENST00000490101	SMARCA2	P51531	1590 aa		33.9	■■■■□ 3.02
SRM-206	ENST00000490101	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	33.83	■■■■□ 3.01
SRM-206	ENST00000490101	HMGXB3	Q12766	1538 aa		33.83	■■■■□ 3.01
SRM-206	ENST00000490101	ERCC6	Q03468	1493 aa		33.73	■■■□□ 2.99
SRM-206	ENST00000490101	BAZ1B	Q9UIG0	1483 aa	Known RBP	33.7	■■■□□ 2.99
SRM-206	ENST00000490101	MROH2B	Q7Z745	1585 aa		33.61	■■■□□ 2.97
SRM-206	ENST00000490101	PEG3	Q9GZU2	1588 aa		33.6	■■■□□ 2.97
SRM-206	ENST00000490101	NES	P48681	1621 aa		33.57	■■■□□ 2.97
SRM-206	ENST00000490101	CUX2	O14529	1486 aa		33.56	■■■□□ 2.96
SRM-206	ENST00000490101	DNAJC5	Q9H3Z4	198 aa		33.45	■■■□□ 2.95
SRM-206	ENST00000490101	LAMC3	Q9Y6N6	1575 aa		33.3	■■■□□ 2.92
SRM-206	ENST00000490101	WIZ	O95785	1651 aa		33.23	■■■□□ 2.91
SRM-206	ENST00000490101	THOC2	Q8NI27	1593 aa	Known RBP	33.19	■■■□□ 2.9
SRM-206	ENST00000490101	KIF21A	Q7Z4S6	1674 aa		33.14	■■■□□ 2.9
SRM-206	ENST00000490101	PDS5B	Q9NTI5	1447 aa		33.11	■■■□□ 2.89
SRM-206	ENST00000490101	CADPS	Q9ULU8	1353 aa		33.05	■■■□□ 2.88
SRM-206	ENST00000490101	RSF1	Q96T23	1441 aa	Predicted RBP	32.93	■■■□□ 2.86
SRM-206	ENST00000490101	MRC2	Q9UBG0	1479 aa		32.84	■■■□□ 2.85
SRM-206	ENST00000490101	TOP2A	P11388	1531 aa	Known RBP	32.78	■■■□□ 2.84
SRM-206	ENST00000490101	WDR62	O43379	1518 aa		32.74	■■■□□ 2.83
SRM-206	ENST00000490101	CEP164	Q9UPV0	1460 aa		32.74	■■■□□ 2.83
SRM-206	ENST00000490101	FANCD2	Q9BXW9	1451 aa		32.7	■■■□□ 2.83
SRM-206	ENST00000490101	CFTR	P13569	1480 aa		32.68	■■■□□ 2.82
SRM-206	ENST00000490101	URB2	Q14146	1524 aa	Known RBP	32.43	■■■□□ 2.78
SRM-206	ENST00000490101	CCDC88B	A6NC98	1476 aa		32.42	■■■□□ 2.78
SRM-206	ENST00000490101	PRDM2	Q13029	1718 aa		32.37	■■■□□ 2.77
SRM-206	ENST00000490101	SUPT5H	O00267	1087 aa	Known RBP	32.3	■■■□□ 2.76
SRM-206	ENST00000490101	TRIM41	Q8WV44	630 aa		32.14	■■■□□ 2.74
SRM-206	ENST00000490101	TOPBP1	Q92547	1522 aa		32.09	■■■□□ 2.73
SRM-206	ENST00000490101	IFT140	Q96RY7	1462 aa		32.06	■■■□□ 2.72
SRM-206	ENST00000490101	OSCAR	Q8IYS5	282 aa		32.06	■■■□□ 2.72
SRM-206	ENST00000490101	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.03	■■■□□ 2.72
SRM-206	ENST00000490101	ABCC8	Q09428	1581 aa		31.98	■■■□□ 2.71
SRM-206	ENST00000490101	DNMBP	Q6XZF7	1577 aa		31.98	■■■□□ 2.71
SRM-206	ENST00000490101	EIF4G3	O43432	1585 aa	Known RBP	31.86	■■■□□ 2.69
SRM-206	ENST00000490101	TARBP1	Q13395	1621 aa	Known RBP	31.79	■■■□□ 2.68
SRM-206	ENST00000490101	POLA1	P09884	1462 aa	Predicted RBP	31.77	■■■□□ 2.68
SRM-206	ENST00000490101	AQR	O60306	1485 aa	Known RBP eCLIP	31.75	■■■□□ 2.67	3e-10	■■■■□ 22.4
SRM-206	ENST00000490101	RAD54L2	Q9Y4B4	1467 aa		31.68	■■■□□ 2.66
SRM-206	ENST00000490101	RIMBP3C	A6NJZ7	1639 aa		31.67	■■■□□ 2.66
SRM-206	ENST00000490101	RIMBP3B	A6NNM3	1639 aa		31.67	■■■□□ 2.66
SRM-206	ENST00000490101	RIMBP3	Q9UFD9	1639 aa		31.67	■■■□□ 2.66
SRM-206	ENST00000490101	SOGA1	O94964	1423 aa		31.63	■■■□□ 2.65
SRM-206	ENST00000490101	CHD1	O14646	1710 aa		31.62	■■■□□ 2.65
SRM-206	ENST00000490101	FGD5	Q6ZNL6	1462 aa		31.59	■■■□□ 2.65
SRM-206	ENST00000490101	FBLN2	P98095	1184 aa		31.59	■■■□□ 2.65
SRM-206	ENST00000490101	TDRD9	Q8NDG6	1382 aa	Known RBP	31.58	■■■□□ 2.65
SRM-206	ENST00000490101	CUX1	P39880	1505 aa		31.58	■■■□□ 2.65
SRM-206	ENST00000490101	ARHGEF11	O15085	1522 aa		31.57	■■■□□ 2.64
SRM-206	ENST00000490101	SNAPC4	Q5SXM2	1469 aa		31.44	■■■□□ 2.62
SRM-206	ENST00000490101	WDR97	A6NE52	1622 aa		31.42	■■■□□ 2.62
SRM-206	ENST00000490101	CYB5RL	Q6IPT4	315 aa		31.36	■■■□□ 2.61
SRM-206	ENST00000490101	GRIN2B	Q13224	1484 aa		31.33	■■■□□ 2.61
SRM-206	ENST00000490101	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.32	■■■□□ 2.6
SRM-206	ENST00000490101	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.32	■■■□□ 2.6
SRM-206	ENST00000490101	ARAP1	Q96P48	1450 aa		31.27	■■■□□ 2.6
SRM-206	ENST00000490101	GAPVD1	Q14C86	1478 aa		31.25	■■■□□ 2.59
SRM-206	ENST00000490101	PBRM1	Q86U86	1689 aa		31.25	■■■□□ 2.59
SRM-206	ENST00000490101	SYNJ1	O43426	1573 aa		31.22	■■■□□ 2.59
SRM-206	ENST00000490101	SYNJ2	O15056	1496 aa		31.22	■■■□□ 2.59
SRM-206	ENST00000490101	CLASP1	Q7Z460	1538 aa		31.21	■■■□□ 2.59
SRM-206	ENST00000490101	ABCA10	Q8WWZ4	1543 aa		31.2	■■■□□ 2.59
SRM-206	ENST00000490101	ABCA5	Q8WWZ7	1642 aa		31.16	■■■□□ 2.58
SRM-206	ENST00000490101	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.11	■■■□□ 2.57
SRM-206	ENST00000490101	TOP2B	Q02880	1626 aa		31.08	■■■□□ 2.57
SRM-206	ENST00000490101	BIVM-ERCC5	R4GMW8	1640 aa		31.08	■■■□□ 2.57
SRM-206	ENST00000490101	TRH	P20396	242 aa	Predicted RBP	31.02	■■■□□ 2.56
SRM-206	ENST00000490101	ADAMTS12	P58397	1594 aa		30.95	■■■□□ 2.54
SRM-206	ENST00000490101	GRIN2A	Q12879	1464 aa		30.94	■■■□□ 2.54
SRM-206	ENST00000490101	FHAD1	B1AJZ9	1412 aa		30.84	■■■□□ 2.53
SRM-206	ENST00000490101	CEP170	Q5SW79	1584 aa		30.83	■■■□□ 2.53
SRM-206	ENST00000490101	ERICH3	Q5RHP9	1530 aa		30.81	■■■□□ 2.52
SRM-206	ENST00000490101	NUP160	Q12769	1436 aa		30.81	■■■□□ 2.52
SRM-206	ENST00000490101	ERCC6L2	Q5T890	1561 aa		30.78	■■■□□ 2.52
SRM-206	ENST00000490101	CHIC1	Q5VXU3	224 aa		30.76	■■■□□ 2.51
SRM-206	ENST00000490101	SHROOM2	Q13796	1616 aa		30.66	■■■□□ 2.5
SRM-206	ENST00000490101	PRG4	Q92954	1404 aa	Predicted RBP	30.55	■■■□□ 2.48
SRM-206	ENST00000490101	RUSC2	Q8N2Y8	1516 aa		30.51	■■■□□ 2.47
SRM-206	ENST00000490101	JPH4	Q96JJ6	628 aa		30.5	■■■□□ 2.47

Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms