RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 NISCHQ9Y2I1 1504 aa24.23■■□□□ 1.47
TMEM39A-210ENST00000490099 AEBP2Q6ZN18 517 aaPredicted RBP22.36■■□□□ 1.17
TMEM39A-210ENST00000490099 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
TMEM39A-210ENST00000490099 CCDC180Q9P1Z9 1646 aa21.61■■□□□ 1.05
TMEM39A-210ENST00000490099 ABCC9O60706 1549 aa21.42■■□□□ 1.02
TMEM39A-210ENST00000490099 RB1CC1Q8TDY2 1594 aa20.48■□□□□ 0.87
TMEM39A-210ENST00000490099 NACADO15069 1562 aa20.44■□□□□ 0.86
TMEM39A-210ENST00000490099 MYO15BQ96JP2 1530 aa20.3■□□□□ 0.84
TMEM39A-210ENST00000490099 DCAF8L2P0C7V8 631 aa20.27■□□□□ 0.84
TMEM39A-210ENST00000490099 ZCCHC6Q5VYS8 1495 aaKnown RBP20.11■□□□□ 0.81
TMEM39A-210ENST00000490099 DCAF1Q9Y4B6 1507 aa20.08■□□□□ 0.81
TMEM39A-210ENST00000490099 DNAJC5BQ9UF47 199 aa20.07■□□□□ 0.8
TMEM39A-210ENST00000490099 PABPN1Q86U42 306 aaKnown RBP eCLIP20.01■□□□□ 0.79
TMEM39A-210ENST00000490099 UNC13AQ9UPW8 1703 aa19.97■□□□□ 0.79
TMEM39A-210ENST00000490099 BICRAQ9NZM4 1560 aa19.94■□□□□ 0.78
TMEM39A-210ENST00000490099 SHROOM4Q9ULL8 1493 aa19.71■□□□□ 0.75
TMEM39A-210ENST00000490099 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
TMEM39A-210ENST00000490099 EIF4G1Q04637 1599 aaKnown RBP19.39■□□□□ 0.69
TMEM39A-210ENST00000490099 CC2D2AQ9P2K1 1620 aa19.36■□□□□ 0.69
TMEM39A-210ENST00000490099 CECR2Q9BXF3 1484 aa19.3■□□□□ 0.68
TMEM39A-210ENST00000490099 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
TMEM39A-210ENST00000490099 NCAPD3P42695 1498 aa18.93■□□□□ 0.62
TMEM39A-210ENST00000490099 SENP3Q9H4L4 574 aaPredicted RBP18.93■□□□□ 0.62
TMEM39A-210ENST00000490099 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
TMEM39A-210ENST00000490099 SMARCA4P51532 1647 aa18.81■□□□□ 0.6
TMEM39A-210ENST00000490099 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
TMEM39A-210ENST00000490099 SMARCA2P51531 1590 aa18.76■□□□□ 0.59
TMEM39A-210ENST00000490099 HMGXB3Q12766 1538 aa18.73■□□□□ 0.59
TMEM39A-210ENST00000490099 PEG3Q9GZU2 1588 aa18.7■□□□□ 0.58
TMEM39A-210ENST00000490099 MROH2BQ7Z745 1585 aa18.65■□□□□ 0.58
TMEM39A-210ENST00000490099 BAZ1BQ9UIG0 1483 aaKnown RBP18.61■□□□□ 0.57
TMEM39A-210ENST00000490099 NESP48681 1621 aa18.47■□□□□ 0.55
TMEM39A-210ENST00000490099 CUX2O14529 1486 aa18.44■□□□□ 0.54
TMEM39A-210ENST00000490099 ERCC6Q03468 1493 aa18.44■□□□□ 0.54
TMEM39A-210ENST00000490099 LAMC3Q9Y6N6 1575 aa18.38■□□□□ 0.53
TMEM39A-210ENST00000490099 RSF1Q96T23 1441 aaPredicted RBP18.38■□□□□ 0.53
TMEM39A-210ENST00000490099 WIZO95785 1651 aa18.38■□□□□ 0.53
TMEM39A-210ENST00000490099 CADPSQ9ULU8 1353 aa18.33■□□□□ 0.53
TMEM39A-210ENST00000490099 DNAJC5Q9H3Z4 198 aa18.31■□□□□ 0.52
TMEM39A-210ENST00000490099 PDS5BQ9NTI5 1447 aa18.29■□□□□ 0.52
TMEM39A-210ENST00000490099 THOC2Q8NI27 1593 aaKnown RBP18.23■□□□□ 0.51
TMEM39A-210ENST00000490099 TOP2AP11388 1531 aaKnown RBP18.19■□□□□ 0.5
TMEM39A-210ENST00000490099 KIF21AQ7Z4S6 1674 aa18.16■□□□□ 0.5
TMEM39A-210ENST00000490099 CFTRP13569 1480 aa18.16■□□□□ 0.5
TMEM39A-210ENST00000490099 MRC2Q9UBG0 1479 aa18.1■□□□□ 0.49
TMEM39A-210ENST00000490099 FANCD2Q9BXW9 1451 aa18.07■□□□□ 0.48
TMEM39A-210ENST00000490099 WDR62O43379 1518 aa18.06■□□□□ 0.48
TMEM39A-210ENST00000490099 CEP164Q9UPV0 1460 aa18.04■□□□□ 0.48
TMEM39A-210ENST00000490099 CCDC88BA6NC98 1476 aa18.02■□□□□ 0.48
TMEM39A-210ENST00000490099 URB2Q14146 1524 aaKnown RBP17.92■□□□□ 0.46
TMEM39A-210ENST00000490099 PRDM2Q13029 1718 aa17.84■□□□□ 0.45
TMEM39A-210ENST00000490099 ABCC8Q09428 1581 aa17.75■□□□□ 0.43
TMEM39A-210ENST00000490099 TOPBP1Q92547 1522 aa17.75■□□□□ 0.43
TMEM39A-210ENST00000490099 IFT140Q96RY7 1462 aa17.71■□□□□ 0.43
TMEM39A-210ENST00000490099 PLPPR3Q6T4P5 718 aa17.7■□□□□ 0.42
TMEM39A-210ENST00000490099 DNMBPQ6XZF7 1577 aa17.67■□□□□ 0.42
TMEM39A-210ENST00000490099 OSCARQ8IYS5 282 aa17.66■□□□□ 0.42
TMEM39A-210ENST00000490099 ZNF608Q9ULD9 1512 aaPredicted RBP17.66■□□□□ 0.42
TMEM39A-210ENST00000490099 FOXD1Q16676 465 aa17.59■□□□□ 0.41
TMEM39A-210ENST00000490099 TARBP1Q13395 1621 aaKnown RBP17.58■□□□□ 0.41
TMEM39A-210ENST00000490099 POLA1P09884 1462 aaPredicted RBP17.58■□□□□ 0.41
TMEM39A-210ENST00000490099 SUPT5HO00267 1087 aaKnown RBP17.58■□□□□ 0.4
TMEM39A-210ENST00000490099 AQRO60306 1485 aaKnown RBP eCLIP17.52■□□□□ 0.45e-7■■■■■ 45.1
TMEM39A-210ENST00000490099 SOGA1O94964 1423 aa17.52■□□□□ 0.4
TMEM39A-210ENST00000490099 CUX1P39880 1505 aa17.51■□□□□ 0.39
TMEM39A-210ENST00000490099 EIF4G3O43432 1585 aaKnown RBP17.5■□□□□ 0.39
TMEM39A-210ENST00000490099 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
TMEM39A-210ENST00000490099 FGD5Q6ZNL6 1462 aa17.47■□□□□ 0.39
TMEM39A-210ENST00000490099 TDRD9Q8NDG6 1382 aaKnown RBP17.45■□□□□ 0.38
TMEM39A-210ENST00000490099 WDR97A6NE52 1622 aa17.42■□□□□ 0.38
TMEM39A-210ENST00000490099 TRIM41Q8WV44 630 aa17.41■□□□□ 0.38
TMEM39A-210ENST00000490099 GRIN2BQ13224 1484 aa17.33■□□□□ 0.37
TMEM39A-210ENST00000490099 ABCA10Q8WWZ4 1543 aa17.32■□□□□ 0.36
TMEM39A-210ENST00000490099 MAGI1Q96QZ7 1491 aaPredicted RBP17.32■□□□□ 0.36
TMEM39A-210ENST00000490099 ARHGEF11O15085 1522 aa17.31■□□□□ 0.36
TMEM39A-210ENST00000490099 SNAPC4Q5SXM2 1469 aa17.31■□□□□ 0.36
TMEM39A-210ENST00000490099 CHD1O14646 1710 aa17.31■□□□□ 0.36
TMEM39A-210ENST00000490099 RIMBP3CA6NJZ7 1639 aa17.31■□□□□ 0.36
TMEM39A-210ENST00000490099 RIMBP3BA6NNM3 1639 aa17.31■□□□□ 0.36
TMEM39A-210ENST00000490099 RIMBP3Q9UFD9 1639 aa17.31■□□□□ 0.36
TMEM39A-210ENST00000490099 FBLN2P98095 1184 aa17.3■□□□□ 0.36
TMEM39A-210ENST00000490099 GAPVD1Q14C86 1478 aa17.29■□□□□ 0.36
TMEM39A-210ENST00000490099 WRNQ14191 1432 aaPredicted RBP eCLIP17.29■□□□□ 0.36
TMEM39A-210ENST00000490099 TOP2BQ02880 1626 aa17.26■□□□□ 0.35
TMEM39A-210ENST00000490099 CHMP7Q8WUX9 453 aaPredicted RBP17.26■□□□□ 0.35
TMEM39A-210ENST00000490099 SYNJ2O15056 1496 aa17.25■□□□□ 0.35
TMEM39A-210ENST00000490099 ABCA5Q8WWZ7 1642 aa17.24■□□□□ 0.35
TMEM39A-210ENST00000490099 BIVM-ERCC5R4GMW8 1640 aa17.24■□□□□ 0.35
TMEM39A-210ENST00000490099 SYNJ1O43426 1573 aa17.22■□□□□ 0.35
TMEM39A-210ENST00000490099 CLASP1Q7Z460 1538 aa17.21■□□□□ 0.35
TMEM39A-210ENST00000490099 CYB5RLQ6IPT4 315 aa17.19■□□□□ 0.34
TMEM39A-210ENST00000490099 ARAP1Q96P48 1450 aa17.17■□□□□ 0.34
TMEM39A-210ENST00000490099 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
TMEM39A-210ENST00000490099 GRIN2AQ12879 1464 aa17.11■□□□□ 0.33
TMEM39A-210ENST00000490099 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
TMEM39A-210ENST00000490099 ERICH3Q5RHP9 1530 aa17.1■□□□□ 0.33
TMEM39A-210ENST00000490099 NUP160Q12769 1436 aa17.09■□□□□ 0.33
TMEM39A-210ENST00000490099 ADAMTS12P58397 1594 aa17.08■□□□□ 0.32
TMEM39A-210ENST00000490099 CEP170Q5SW79 1584 aa17.01■□□□□ 0.31
TMEM39A-210ENST00000490099 IGF1RP08069 1367 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms