RNA–Protein interactions for RNA: ENST00000489687.1

CNOT9-207, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 3

Gene CNOT9, Length 288 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-207ENST00000489687 CHIC1Q5VXU3 224 aa14.52□□□□□ -0.09
CNOT9-207ENST00000489687 NISCHQ9Y2I1 1504 aa14.41□□□□□ -0.1
CNOT9-207ENST00000489687 AEBP2Q6ZN18 517 aaPredicted RBP14.29□□□□□ -0.12
CNOT9-207ENST00000489687 CCDC180Q9P1Z9 1646 aa12.91□□□□□ -0.34
CNOT9-207ENST00000489687 ABCC9O60706 1549 aa12.9□□□□□ -0.34
CNOT9-207ENST00000489687 PHF23Q9BUL5 403 aaPredicted RBP12.57□□□□□ -0.4
CNOT9-207ENST00000489687 SENP3Q9H4L4 574 aaPredicted RBP12.49□□□□□ -0.41
CNOT9-207ENST00000489687 RB1CC1Q8TDY2 1594 aa12.24□□□□□ -0.45
CNOT9-207ENST00000489687 NACADO15069 1562 aa12.13□□□□□ -0.47
CNOT9-207ENST00000489687 DCAF8L2P0C7V8 631 aa12.13□□□□□ -0.47
CNOT9-207ENST00000489687 PLPPR3Q6T4P5 718 aa12.07□□□□□ -0.48
CNOT9-207ENST00000489687 UNC13AQ9UPW8 1703 aa12.06□□□□□ -0.48
CNOT9-207ENST00000489687 PABPN1Q86U42 306 aaKnown RBP eCLIP11.99□□□□□ -0.49
CNOT9-207ENST00000489687 DNAJC5BQ9UF47 199 aa11.99□□□□□ -0.49
CNOT9-207ENST00000489687 ZCCHC6Q5VYS8 1495 aaKnown RBP11.98□□□□□ -0.49
CNOT9-207ENST00000489687 MYO15BQ96JP2 1530 aa11.94□□□□□ -0.5
CNOT9-207ENST00000489687 BICRAQ9NZM4 1560 aa11.93□□□□□ -0.5
CNOT9-207ENST00000489687 SCRIBQ14160 1630 aa11.86□□□□□ -0.51
CNOT9-207ENST00000489687 DCAF1Q9Y4B6 1507 aa11.84□□□□□ -0.51
CNOT9-207ENST00000489687 SHROOM4Q9ULL8 1493 aa11.66□□□□□ -0.54
CNOT9-207ENST00000489687 CC2D2AQ9P2K1 1620 aa11.64□□□□□ -0.55
CNOT9-207ENST00000489687 EIF4G1Q04637 1599 aaKnown RBP11.62□□□□□ -0.55
CNOT9-207ENST00000489687 CECR2Q9BXF3 1484 aa11.57□□□□□ -0.56
CNOT9-207ENST00000489687 FOXD1Q16676 465 aa11.28□□□□□ -0.6
CNOT9-207ENST00000489687 SMARCA4P51532 1647 aa11.26□□□□□ -0.61
CNOT9-207ENST00000489687 ATAD2BQ9ULI0 1458 aa11.21□□□□□ -0.61
CNOT9-207ENST00000489687 NCAPD3P42695 1498 aa11.19□□□□□ -0.62
CNOT9-207ENST00000489687 SMARCA2P51531 1590 aa11.17□□□□□ -0.62
CNOT9-207ENST00000489687 BAZ1AQ9NRL2 1556 aaPredicted RBP11.17□□□□□ -0.62
CNOT9-207ENST00000489687 HMGXB3Q12766 1538 aa11.16□□□□□ -0.62
CNOT9-207ENST00000489687 MROH2BQ7Z745 1585 aa11.15□□□□□ -0.62
CNOT9-207ENST00000489687 BAZ1BQ9UIG0 1483 aaKnown RBP11.13□□□□□ -0.63
CNOT9-207ENST00000489687 NESP48681 1621 aa11.12□□□□□ -0.63
CNOT9-207ENST00000489687 ERCC6Q03468 1493 aa11.11□□□□□ -0.63
CNOT9-207ENST00000489687 PEG3Q9GZU2 1588 aa11.09□□□□□ -0.63
CNOT9-207ENST00000489687 DNAJC5Q9H3Z4 198 aa11.04□□□□□ -0.64
CNOT9-207ENST00000489687 WIZO95785 1651 aa11.04□□□□□ -0.64
CNOT9-207ENST00000489687 ADRA2BP18089 450 aa11.02□□□□□ -0.65
CNOT9-207ENST00000489687 CUX2O14529 1486 aa11□□□□□ -0.65
CNOT9-207ENST00000489687 KIF21AQ7Z4S6 1674 aa10.99□□□□□ -0.65
CNOT9-207ENST00000489687 THOC2Q8NI27 1593 aaKnown RBP10.99□□□□□ -0.65
CNOT9-207ENST00000489687 LAMC3Q9Y6N6 1575 aa10.96□□□□□ -0.65
CNOT9-207ENST00000489687 PPP6R1Q9UPN7 881 aa10.94□□□□□ -0.66
CNOT9-207ENST00000489687 RSF1Q96T23 1441 aaPredicted RBP10.9□□□□□ -0.66
CNOT9-207ENST00000489687 TOP2AP11388 1531 aaKnown RBP10.87□□□□□ -0.67
CNOT9-207ENST00000489687 PDS5BQ9NTI5 1447 aa10.86□□□□□ -0.67
CNOT9-207ENST00000489687 CADPSQ9ULU8 1353 aa10.86□□□□□ -0.67
CNOT9-207ENST00000489687 MRC2Q9UBG0 1479 aa10.83□□□□□ -0.68
CNOT9-207ENST00000489687 PIAS4Q8N2W9 510 aaPredicted RBP10.83□□□□□ -0.68
CNOT9-207ENST00000489687 CEP164Q9UPV0 1460 aa10.81□□□□□ -0.68
CNOT9-207ENST00000489687 WDR62O43379 1518 aa10.8□□□□□ -0.68
CNOT9-207ENST00000489687 FANCD2Q9BXW9 1451 aa10.8□□□□□ -0.68
CNOT9-207ENST00000489687 CFTRP13569 1480 aa10.77□□□□□ -0.69
CNOT9-207ENST00000489687 PRDM2Q13029 1718 aa10.75□□□□□ -0.69
CNOT9-207ENST00000489687 URB2Q14146 1524 aaKnown RBP10.73□□□□□ -0.69
CNOT9-207ENST00000489687 CCDC88BA6NC98 1476 aa10.72□□□□□ -0.69
CNOT9-207ENST00000489687 NCBP3Q53F19 620 aaKnown RBP10.62□□□□□ -0.71
CNOT9-207ENST00000489687 MSH5O43196 834 aa10.61□□□□□ -0.71
CNOT9-207ENST00000489687 TOPBP1Q92547 1522 aa10.6□□□□□ -0.71
CNOT9-207ENST00000489687 ZNF608Q9ULD9 1512 aaPredicted RBP10.6□□□□□ -0.71
CNOT9-207ENST00000489687 DNMBPQ6XZF7 1577 aa10.57□□□□□ -0.72
CNOT9-207ENST00000489687 SCAF1Q9H7N4 1312 aaKnown RBP10.57□□□□□ -0.72
CNOT9-207ENST00000489687 EIF4G3O43432 1585 aaKnown RBP10.56□□□□□ -0.72
CNOT9-207ENST00000489687 IFT140Q96RY7 1462 aa10.55□□□□□ -0.72
CNOT9-207ENST00000489687 TRIM41Q8WV44 630 aa10.54□□□□□ -0.72
CNOT9-207ENST00000489687 PPP4R3CPQ6ZMV5 832 aa10.53□□□□□ -0.72
CNOT9-207ENST00000489687 TARBP1Q13395 1621 aaKnown RBP10.52□□□□□ -0.73
CNOT9-207ENST00000489687 POLA1P09884 1462 aaPredicted RBP10.51□□□□□ -0.73
CNOT9-207ENST00000489687 SUPT5HO00267 1087 aaKnown RBP10.5□□□□□ -0.73
CNOT9-207ENST00000489687 KCNA4P22459 653 aa10.49□□□□□ -0.73
CNOT9-207ENST00000489687 CHD1O14646 1710 aa10.49□□□□□ -0.73
CNOT9-207ENST00000489687 AQRO60306 1485 aaKnown RBP eCLIP10.49□□□□□ -0.735e-8■■■■■ 61.9
CNOT9-207ENST00000489687 RAD54L2Q9Y4B4 1467 aa10.49□□□□□ -0.73
CNOT9-207ENST00000489687 CUX1P39880 1505 aa10.48□□□□□ -0.73
CNOT9-207ENST00000489687 ABCC8Q09428 1581 aa10.48□□□□□ -0.73
CNOT9-207ENST00000489687 FGD5Q6ZNL6 1462 aa10.46□□□□□ -0.74
CNOT9-207ENST00000489687 OSCARQ8IYS5 282 aa10.45□□□□□ -0.74
CNOT9-207ENST00000489687 RIMBP3CA6NJZ7 1639 aa10.44□□□□□ -0.74
CNOT9-207ENST00000489687 RIMBP3BA6NNM3 1639 aa10.44□□□□□ -0.74
CNOT9-207ENST00000489687 RIMBP3Q9UFD9 1639 aa10.44□□□□□ -0.74
CNOT9-207ENST00000489687 TDRD9Q8NDG6 1382 aaKnown RBP10.42□□□□□ -0.74
CNOT9-207ENST00000489687 WDR97A6NE52 1622 aa10.41□□□□□ -0.74
CNOT9-207ENST00000489687 ARHGEF11O15085 1522 aa10.41□□□□□ -0.74
CNOT9-207ENST00000489687 SOGA1O94964 1423 aa10.41□□□□□ -0.74
CNOT9-207ENST00000489687 SNAPC4Q5SXM2 1469 aa10.4□□□□□ -0.74
CNOT9-207ENST00000489687 FBLN2P98095 1184 aa10.39□□□□□ -0.75
CNOT9-207ENST00000489687 PBRM1Q86U86 1689 aa10.38□□□□□ -0.75
CNOT9-207ENST00000489687 SYNJ1O43426 1573 aa10.35□□□□□ -0.75
CNOT9-207ENST00000489687 ABCA5Q8WWZ7 1642 aa10.33□□□□□ -0.76
CNOT9-207ENST00000489687 GRIN2BQ13224 1484 aa10.32□□□□□ -0.76
CNOT9-207ENST00000489687 ARAP1Q96P48 1450 aa10.32□□□□□ -0.76
CNOT9-207ENST00000489687 CLASP1Q7Z460 1538 aa10.32□□□□□ -0.76
CNOT9-207ENST00000489687 MAGI1Q96QZ7 1491 aaPredicted RBP10.31□□□□□ -0.76
CNOT9-207ENST00000489687 GAPVD1Q14C86 1478 aa10.3□□□□□ -0.76
CNOT9-207ENST00000489687 BIVM-ERCC5R4GMW8 1640 aa10.3□□□□□ -0.76
CNOT9-207ENST00000489687 ABCA10Q8WWZ4 1543 aa10.3□□□□□ -0.76
CNOT9-207ENST00000489687 CNKSR2Q8WXI2 1034 aa10.3□□□□□ -0.76
CNOT9-207ENST00000489687 TOP2BQ02880 1626 aa10.29□□□□□ -0.76
CNOT9-207ENST00000489687 SYNJ2O15056 1496 aa10.29□□□□□ -0.76
CNOT9-207ENST00000489687 WRNQ14191 1432 aaPredicted RBP eCLIP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms