RNA–Protein interactions for RNA: ENST00000489503.5

SMARCD3-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 378 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-213ENST00000489503 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
SMARCD3-213ENST00000489503 CCDC180Q9P1Z9 1646 aa26.6■■□□□ 1.85
SMARCD3-213ENST00000489503 ABCC9O60706 1549 aa26.07■■□□□ 1.76
SMARCD3-213ENST00000489503 RB1CC1Q8TDY2 1594 aa25.01■■□□□ 1.59
SMARCD3-213ENST00000489503 DCAF8L2P0C7V8 631 aa24.98■■□□□ 1.59
SMARCD3-213ENST00000489503 NACADO15069 1562 aa24.95■■□□□ 1.58
SMARCD3-213ENST00000489503 ZCCHC6Q5VYS8 1495 aaKnown RBP24.94■■□□□ 1.58
SMARCD3-213ENST00000489503 MYO15BQ96JP2 1530 aa24.75■■□□□ 1.55
SMARCD3-213ENST00000489503 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
SMARCD3-213ENST00000489503 UNC13AQ9UPW8 1703 aa24.55■■□□□ 1.52
SMARCD3-213ENST00000489503 SCRIBQ14160 1630 aa24.36■■□□□ 1.49
SMARCD3-213ENST00000489503 PABPN1Q86U42 306 aaKnown RBP eCLIP24.33■■□□□ 1.49
SMARCD3-213ENST00000489503 BICRAQ9NZM4 1560 aa24.31■■□□□ 1.48
SMARCD3-213ENST00000489503 SHROOM4Q9ULL8 1493 aa23.93■■□□□ 1.42
SMARCD3-213ENST00000489503 DNAJC5BQ9UF47 199 aa23.88■■□□□ 1.41
SMARCD3-213ENST00000489503 EIF4G1Q04637 1599 aaKnown RBP23.65■■□□□ 1.38
SMARCD3-213ENST00000489503 CC2D2AQ9P2K1 1620 aa23.56■■□□□ 1.36
SMARCD3-213ENST00000489503 CECR2Q9BXF3 1484 aa23.37■■□□□ 1.33
SMARCD3-213ENST00000489503 SMARCA4P51532 1647 aa23.25■■□□□ 1.31
SMARCD3-213ENST00000489503 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
SMARCD3-213ENST00000489503 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
SMARCD3-213ENST00000489503 ATAD2BQ9ULI0 1458 aa23.07■■□□□ 1.28
SMARCD3-213ENST00000489503 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
SMARCD3-213ENST00000489503 NCAPD3P42695 1498 aa23.01■■□□□ 1.27
SMARCD3-213ENST00000489503 PEG3Q9GZU2 1588 aa22.96■■□□□ 1.27
SMARCD3-213ENST00000489503 HMGXB3Q12766 1538 aa22.94■■□□□ 1.26
SMARCD3-213ENST00000489503 BAZ1BQ9UIG0 1483 aaKnown RBP22.9■■□□□ 1.26
SMARCD3-213ENST00000489503 WIZO95785 1651 aa22.87■■□□□ 1.25
SMARCD3-213ENST00000489503 RSF1Q96T23 1441 aaPredicted RBP22.79■■□□□ 1.24
SMARCD3-213ENST00000489503 TOP2AP11388 1531 aaKnown RBP22.59■■□□□ 1.21
SMARCD3-213ENST00000489503 NESP48681 1621 aa22.58■■□□□ 1.21
SMARCD3-213ENST00000489503 LAMC3Q9Y6N6 1575 aa22.43■■□□□ 1.18
SMARCD3-213ENST00000489503 ERCC6Q03468 1493 aa22.43■■□□□ 1.18
SMARCD3-213ENST00000489503 CADPSQ9ULU8 1353 aa22.35■■□□□ 1.17
SMARCD3-213ENST00000489503 KIF21AQ7Z4S6 1674 aa22.33■■□□□ 1.17
SMARCD3-213ENST00000489503 CCDC88BA6NC98 1476 aa22.31■■□□□ 1.16
SMARCD3-213ENST00000489503 SUPT5HO00267 1087 aaKnown RBP22.25■■□□□ 1.15
SMARCD3-213ENST00000489503 PDS5BQ9NTI5 1447 aa22.24■■□□□ 1.15
SMARCD3-213ENST00000489503 THOC2Q8NI27 1593 aaKnown RBP22.24■■□□□ 1.15
SMARCD3-213ENST00000489503 CFTRP13569 1480 aa22.23■■□□□ 1.15
SMARCD3-213ENST00000489503 FANCD2Q9BXW9 1451 aa22.15■■□□□ 1.14
SMARCD3-213ENST00000489503 PRDM2Q13029 1718 aa22.14■■□□□ 1.14
SMARCD3-213ENST00000489503 CUX2O14529 1486 aa22.13■■□□□ 1.13
SMARCD3-213ENST00000489503 CEP164Q9UPV0 1460 aa22.12■■□□□ 1.13
SMARCD3-213ENST00000489503 MRC2Q9UBG0 1479 aa22.09■■□□□ 1.13
SMARCD3-213ENST00000489503 WDR62O43379 1518 aa22.02■■□□□ 1.12
SMARCD3-213ENST00000489503 URB2Q14146 1524 aaKnown RBP21.96■■□□□ 1.11
SMARCD3-213ENST00000489503 TOPBP1Q92547 1522 aa21.8■■□□□ 1.08
SMARCD3-213ENST00000489503 DNMBPQ6XZF7 1577 aa21.78■■□□□ 1.08
SMARCD3-213ENST00000489503 ABCC8Q09428 1581 aa21.69■■□□□ 1.06
SMARCD3-213ENST00000489503 CUX1P39880 1505 aa21.67■■□□□ 1.06
SMARCD3-213ENST00000489503 POLA1P09884 1462 aaPredicted RBP21.62■■□□□ 1.05
SMARCD3-213ENST00000489503 IFT140Q96RY7 1462 aa21.62■■□□□ 1.05
SMARCD3-213ENST00000489503 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
SMARCD3-213ENST00000489503 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
SMARCD3-213ENST00000489503 TARBP1Q13395 1621 aaKnown RBP21.58■■□□□ 1.04
SMARCD3-213ENST00000489503 RAD54L2Q9Y4B4 1467 aa21.56■■□□□ 1.04
SMARCD3-213ENST00000489503 EIF4G3O43432 1585 aaKnown RBP21.53■■□□□ 1.04
SMARCD3-213ENST00000489503 SYNJ1O43426 1573 aa21.51■■□□□ 1.03
SMARCD3-213ENST00000489503 SOGA1O94964 1423 aa21.48■■□□□ 1.03
SMARCD3-213ENST00000489503 WRNQ14191 1432 aaPredicted RBP eCLIP21.48■■□□□ 1.03
SMARCD3-213ENST00000489503 BIVM-ERCC5R4GMW8 1640 aa21.47■■□□□ 1.03
SMARCD3-213ENST00000489503 TOP2BQ02880 1626 aa21.45■■□□□ 1.02
SMARCD3-213ENST00000489503 AQRO60306 1485 aaKnown RBP eCLIP21.45■■□□□ 1.02
SMARCD3-213ENST00000489503 WDR97A6NE52 1622 aa21.44■■□□□ 1.02
SMARCD3-213ENST00000489503 DNAJC5Q9H3Z4 198 aa21.41■■□□□ 1.02
SMARCD3-213ENST00000489503 TDRD9Q8NDG6 1382 aaKnown RBP21.4■■□□□ 1.02
SMARCD3-213ENST00000489503 ABCA10Q8WWZ4 1543 aa21.33■■□□□ 1
SMARCD3-213ENST00000489503 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
SMARCD3-213ENST00000489503 PBRM1Q86U86 1689 aa21.29■■□□□ 1
SMARCD3-213ENST00000489503 CHD1O14646 1710 aa21.28■■□□□ 1
SMARCD3-213ENST00000489503 SNAPC4Q5SXM2 1469 aa21.27■■□□□ 1
SMARCD3-213ENST00000489503 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
SMARCD3-213ENST00000489503 GRIN2BQ13224 1484 aa21.24■□□□□ 0.99
SMARCD3-213ENST00000489503 MAGI1Q96QZ7 1491 aaPredicted RBP21.18■□□□□ 0.98
SMARCD3-213ENST00000489503 OSCARQ8IYS5 282 aa21.17■□□□□ 0.98
SMARCD3-213ENST00000489503 FBLN2P98095 1184 aa21.16■□□□□ 0.98
SMARCD3-213ENST00000489503 ADAMTS12P58397 1594 aa21.11■□□□□ 0.97
SMARCD3-213ENST00000489503 SYNJ2O15056 1496 aa21.1■□□□□ 0.97
SMARCD3-213ENST00000489503 ERICH3Q5RHP9 1530 aa21.06■□□□□ 0.96
SMARCD3-213ENST00000489503 CHMP7Q8WUX9 453 aaPredicted RBP21.05■□□□□ 0.96
SMARCD3-213ENST00000489503 KIF27Q86VH2 1401 aa21.01■□□□□ 0.95
SMARCD3-213ENST00000489503 GRIN2AQ12879 1464 aa21■□□□□ 0.95
SMARCD3-213ENST00000489503 CLASP1Q7Z460 1538 aa20.99■□□□□ 0.95
SMARCD3-213ENST00000489503 FHAD1B1AJZ9 1412 aa20.99■□□□□ 0.95
SMARCD3-213ENST00000489503 RIMBP3CA6NJZ7 1639 aa20.97■□□□□ 0.95
SMARCD3-213ENST00000489503 RIMBP3BA6NNM3 1639 aa20.97■□□□□ 0.95
SMARCD3-213ENST00000489503 RIMBP3Q9UFD9 1639 aa20.97■□□□□ 0.95
SMARCD3-213ENST00000489503 ARHGEF11O15085 1522 aa20.94■□□□□ 0.94
SMARCD3-213ENST00000489503 CEP170Q5SW79 1584 aa20.94■□□□□ 0.94
SMARCD3-213ENST00000489503 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
SMARCD3-213ENST00000489503 RUSC2Q8N2Y8 1516 aa20.92■□□□□ 0.94
SMARCD3-213ENST00000489503 IGF1RP08069 1367 aa20.91■□□□□ 0.94
SMARCD3-213ENST00000489503 CUL7Q14999 1698 aa20.9■□□□□ 0.94
SMARCD3-213ENST00000489503 NUP160Q12769 1436 aa20.88■□□□□ 0.93
SMARCD3-213ENST00000489503 CARMIL1Q5VZK9 1371 aa20.8■□□□□ 0.92
SMARCD3-213ENST00000489503 ARAP1Q96P48 1450 aa20.8■□□□□ 0.92
SMARCD3-213ENST00000489503 ERCC6L2Q5T890 1561 aa20.77■□□□□ 0.92
SMARCD3-213ENST00000489503 SHROOM2Q13796 1616 aa20.75■□□□□ 0.91
SMARCD3-213ENST00000489503 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms