RNA–Protein interactions for RNA: ENST00000489402.1

SNX17-207, Transcript of sorting nexin 17, humanhuman

TSL 2

Gene SNX17, Length 743 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-207ENST00000489402 NISCHQ9Y2I1 1504 aa23.5■■□□□ 1.35
SNX17-207ENST00000489402 ABCC9O60706 1549 aa21.17■□□□□ 0.98
SNX17-207ENST00000489402 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
SNX17-207ENST00000489402 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
SNX17-207ENST00000489402 DNAJC5BQ9UF47 199 aa20.04■□□□□ 0.8
SNX17-207ENST00000489402 NACADO15069 1562 aa20■□□□□ 0.79
SNX17-207ENST00000489402 DCAF8L2P0C7V8 631 aa19.88■□□□□ 0.77
SNX17-207ENST00000489402 PABPN1Q86U42 306 aaKnown RBP eCLIP19.76■□□□□ 0.75
SNX17-207ENST00000489402 UNC13AQ9UPW8 1703 aa19.7■□□□□ 0.74
SNX17-207ENST00000489402 MYO15BQ96JP2 1530 aa19.7■□□□□ 0.74
SNX17-207ENST00000489402 BICRAQ9NZM4 1560 aa19.57■□□□□ 0.72
SNX17-207ENST00000489402 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
SNX17-207ENST00000489402 DCAF1Q9Y4B6 1507 aa19.42■□□□□ 0.7
SNX17-207ENST00000489402 SHROOM4Q9ULL8 1493 aa19.31■□□□□ 0.68
SNX17-207ENST00000489402 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
SNX17-207ENST00000489402 CC2D2AQ9P2K1 1620 aa19.13■□□□□ 0.65
SNX17-207ENST00000489402 CECR2Q9BXF3 1484 aa19.08■□□□□ 0.64
SNX17-207ENST00000489402 EIF4G1Q04637 1599 aaKnown RBP19.07■□□□□ 0.64
SNX17-207ENST00000489402 AEBP2Q6ZN18 517 aaPredicted RBP18.66■□□□□ 0.58
SNX17-207ENST00000489402 NCAPD3P42695 1498 aa18.43■□□□□ 0.54
SNX17-207ENST00000489402 SMARCA4P51532 1647 aa18.37■□□□□ 0.53
SNX17-207ENST00000489402 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
SNX17-207ENST00000489402 ATAD2BQ9ULI0 1458 aa18.36■□□□□ 0.53
SNX17-207ENST00000489402 HMGXB3Q12766 1538 aa18.33■□□□□ 0.52
SNX17-207ENST00000489402 ERCC6Q03468 1493 aa18.32■□□□□ 0.52
SNX17-207ENST00000489402 CUX2O14529 1486 aa18.29■□□□□ 0.52
SNX17-207ENST00000489402 DNAJC5Q9H3Z4 198 aa18.29■□□□□ 0.52
SNX17-207ENST00000489402 BAZ1AQ9NRL2 1556 aaPredicted RBP18.28■□□□□ 0.52
SNX17-207ENST00000489402 NESP48681 1621 aa18.23■□□□□ 0.51
SNX17-207ENST00000489402 BAZ1BQ9UIG0 1483 aaKnown RBP18.22■□□□□ 0.51
SNX17-207ENST00000489402 PEG3Q9GZU2 1588 aa18.18■□□□□ 0.5
SNX17-207ENST00000489402 MROH2BQ7Z745 1585 aa18.15■□□□□ 0.5
SNX17-207ENST00000489402 LAMC3Q9Y6N6 1575 aa18.07■□□□□ 0.48
SNX17-207ENST00000489402 THOC2Q8NI27 1593 aaKnown RBP18.01■□□□□ 0.47
SNX17-207ENST00000489402 PDS5BQ9NTI5 1447 aa17.96■□□□□ 0.47
SNX17-207ENST00000489402 KIF21AQ7Z4S6 1674 aa17.96■□□□□ 0.47
SNX17-207ENST00000489402 CHIC1Q5VXU3 224 aa17.95■□□□□ 0.46
SNX17-207ENST00000489402 WIZO95785 1651 aa17.94■□□□□ 0.46
SNX17-207ENST00000489402 CADPSQ9ULU8 1353 aa17.87■□□□□ 0.45
SNX17-207ENST00000489402 MRC2Q9UBG0 1479 aa17.81■□□□□ 0.44
SNX17-207ENST00000489402 WDR62O43379 1518 aa17.75■□□□□ 0.43
SNX17-207ENST00000489402 CEP164Q9UPV0 1460 aa17.73■□□□□ 0.43
SNX17-207ENST00000489402 RSF1Q96T23 1441 aaPredicted RBP17.72■□□□□ 0.43
SNX17-207ENST00000489402 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
SNX17-207ENST00000489402 TOP2AP11388 1531 aaKnown RBP17.68■□□□□ 0.42
SNX17-207ENST00000489402 CFTRP13569 1480 aa17.66■□□□□ 0.42
SNX17-207ENST00000489402 PRDM2Q13029 1718 aa17.55■□□□□ 0.4
SNX17-207ENST00000489402 URB2Q14146 1524 aaKnown RBP17.54■□□□□ 0.4
SNX17-207ENST00000489402 TRIM41Q8WV44 630 aa17.49■□□□□ 0.39
SNX17-207ENST00000489402 CCDC88BA6NC98 1476 aa17.49■□□□□ 0.39
SNX17-207ENST00000489402 OSCARQ8IYS5 282 aa17.43■□□□□ 0.38
SNX17-207ENST00000489402 IFT140Q96RY7 1462 aa17.37■□□□□ 0.37
SNX17-207ENST00000489402 ZNF608Q9ULD9 1512 aaPredicted RBP17.37■□□□□ 0.37
SNX17-207ENST00000489402 TOPBP1Q92547 1522 aa17.34■□□□□ 0.37
SNX17-207ENST00000489402 ABCC8Q09428 1581 aa17.33■□□□□ 0.37
SNX17-207ENST00000489402 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
SNX17-207ENST00000489402 EIF4G3O43432 1585 aaKnown RBP17.26■□□□□ 0.35
SNX17-207ENST00000489402 RIMBP3CA6NJZ7 1639 aa17.21■□□□□ 0.35
SNX17-207ENST00000489402 RIMBP3BA6NNM3 1639 aa17.21■□□□□ 0.35
SNX17-207ENST00000489402 RIMBP3Q9UFD9 1639 aa17.21■□□□□ 0.35
SNX17-207ENST00000489402 TARBP1Q13395 1621 aaKnown RBP17.19■□□□□ 0.34
SNX17-207ENST00000489402 AQRO60306 1485 aaKnown RBP eCLIP17.18■□□□□ 0.34
SNX17-207ENST00000489402 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
SNX17-207ENST00000489402 ARHGEF11O15085 1522 aa17.16■□□□□ 0.34
SNX17-207ENST00000489402 CHD1O14646 1710 aa17.15■□□□□ 0.34
SNX17-207ENST00000489402 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
SNX17-207ENST00000489402 SOGA1O94964 1423 aa17.08■□□□□ 0.32
SNX17-207ENST00000489402 FBLN2P98095 1184 aa17.07■□□□□ 0.32
SNX17-207ENST00000489402 TDRD9Q8NDG6 1382 aaKnown RBP17.06■□□□□ 0.32
SNX17-207ENST00000489402 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
SNX17-207ENST00000489402 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
SNX17-207ENST00000489402 CUX1P39880 1505 aa17.04■□□□□ 0.32
SNX17-207ENST00000489402 CYB5RLQ6IPT4 315 aa17.01■□□□□ 0.31
SNX17-207ENST00000489402 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
SNX17-207ENST00000489402 ARAP1Q96P48 1450 aa16.97■□□□□ 0.31
SNX17-207ENST00000489402 MAGI1Q96QZ7 1491 aaPredicted RBP16.97■□□□□ 0.31
SNX17-207ENST00000489402 SUPT5HO00267 1087 aaKnown RBP16.96■□□□□ 0.31
SNX17-207ENST00000489402 GRIN2BQ13224 1484 aa16.95■□□□□ 0.3
SNX17-207ENST00000489402 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
SNX17-207ENST00000489402 CHMP7Q8WUX9 453 aaPredicted RBP16.94■□□□□ 0.3
SNX17-207ENST00000489402 CLASP1Q7Z460 1538 aa16.92■□□□□ 0.3
SNX17-207ENST00000489402 PBRM1Q86U86 1689 aa16.91■□□□□ 0.3
SNX17-207ENST00000489402 SYNJ2O15056 1496 aa16.91■□□□□ 0.3
SNX17-207ENST00000489402 GAPVD1Q14C86 1478 aa16.88■□□□□ 0.29
SNX17-207ENST00000489402 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
SNX17-207ENST00000489402 ABCA10Q8WWZ4 1543 aa16.86■□□□□ 0.29
SNX17-207ENST00000489402 ABCA5Q8WWZ7 1642 aa16.85■□□□□ 0.29
SNX17-207ENST00000489402 WRNQ14191 1432 aaPredicted RBP eCLIP16.79■□□□□ 0.28
SNX17-207ENST00000489402 BIVM-ERCC5R4GMW8 1640 aa16.76■□□□□ 0.27
SNX17-207ENST00000489402 TOP2BQ02880 1626 aa16.75■□□□□ 0.27
SNX17-207ENST00000489402 ERCC6L2Q5T890 1561 aa16.74■□□□□ 0.27
SNX17-207ENST00000489402 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
SNX17-207ENST00000489402 ADAMTS12P58397 1594 aa16.72■□□□□ 0.27
SNX17-207ENST00000489402 FHAD1B1AJZ9 1412 aa16.67■□□□□ 0.26
SNX17-207ENST00000489402 CEP170Q5SW79 1584 aa16.67■□□□□ 0.26
SNX17-207ENST00000489402 ERICH3Q5RHP9 1530 aa16.66■□□□□ 0.26
SNX17-207ENST00000489402 NUP160Q12769 1436 aa16.66■□□□□ 0.26
SNX17-207ENST00000489402 SHROOM2Q13796 1616 aa16.62■□□□□ 0.25
SNX17-207ENST00000489402 PRG4Q92954 1404 aaPredicted RBP16.52■□□□□ 0.23
SNX17-207ENST00000489402 RUSC2Q8N2Y8 1516 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms