RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 NISCHQ9Y2I1 1504 aa16.54■□□□□ 0.24
PTCH1-211ENST00000488809 ABCC9O60706 1549 aa15.09■□□□□ 0.01
PTCH1-211ENST00000488809 CCDC180Q9P1Z9 1646 aa15.03■□□□□ -0
PTCH1-211ENST00000488809 RB1CC1Q8TDY2 1594 aa14.37□□□□□ -0.11
PTCH1-211ENST00000488809 NACADO15069 1562 aa14.22□□□□□ -0.13
PTCH1-211ENST00000488809 DNAJC5BQ9UF47 199 aa14.21□□□□□ -0.13
PTCH1-211ENST00000488809 UNC13AQ9UPW8 1703 aa14.07□□□□□ -0.16
PTCH1-211ENST00000488809 DCAF8L2P0C7V8 631 aa14.01□□□□□ -0.17
PTCH1-211ENST00000488809 PABPN1Q86U42 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
PTCH1-211ENST00000488809 MYO15BQ96JP2 1530 aa13.95□□□□□ -0.18
PTCH1-211ENST00000488809 BICRAQ9NZM4 1560 aa13.88□□□□□ -0.19
PTCH1-211ENST00000488809 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
PTCH1-211ENST00000488809 DCAF1Q9Y4B6 1507 aa13.69□□□□□ -0.22
PTCH1-211ENST00000488809 CC2D2AQ9P2K1 1620 aa13.67□□□□□ -0.22
PTCH1-211ENST00000488809 ZCCHC6Q5VYS8 1495 aaKnown RBP13.67□□□□□ -0.22
PTCH1-211ENST00000488809 CECR2Q9BXF3 1484 aa13.63□□□□□ -0.23
PTCH1-211ENST00000488809 SCRIBQ14160 1630 aa13.61□□□□□ -0.23
PTCH1-211ENST00000488809 EIF4G1Q04637 1599 aaKnown RBP13.59□□□□□ -0.23
PTCH1-211ENST00000488809 DNAJC5Q9H3Z4 198 aa13.28□□□□□ -0.28
PTCH1-211ENST00000488809 CUX2O14529 1486 aa13.16□□□□□ -0.3
PTCH1-211ENST00000488809 ERCC6Q03468 1493 aa13.1□□□□□ -0.31
PTCH1-211ENST00000488809 NCAPD3P42695 1498 aa13.07□□□□□ -0.32
PTCH1-211ENST00000488809 SMARCA2P51531 1590 aa13.02□□□□□ -0.33
PTCH1-211ENST00000488809 HMGXB3Q12766 1538 aa13□□□□□ -0.33
PTCH1-211ENST00000488809 ATAD2BQ9ULI0 1458 aa12.99□□□□□ -0.33
PTCH1-211ENST00000488809 SMARCA4P51532 1647 aa12.98□□□□□ -0.33
PTCH1-211ENST00000488809 BAZ1AQ9NRL2 1556 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-211ENST00000488809 BAZ1BQ9UIG0 1483 aaKnown RBP12.9□□□□□ -0.34
PTCH1-211ENST00000488809 NESP48681 1621 aa12.89□□□□□ -0.35
PTCH1-211ENST00000488809 LAMC3Q9Y6N6 1575 aa12.88□□□□□ -0.35
PTCH1-211ENST00000488809 THOC2Q8NI27 1593 aaKnown RBP12.87□□□□□ -0.35
PTCH1-211ENST00000488809 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
PTCH1-211ENST00000488809 KIF21AQ7Z4S6 1674 aa12.81□□□□□ -0.36
PTCH1-211ENST00000488809 PDS5BQ9NTI5 1447 aa12.78□□□□□ -0.36
PTCH1-211ENST00000488809 MROH2BQ7Z745 1585 aa12.71□□□□□ -0.37
PTCH1-211ENST00000488809 MRC2Q9UBG0 1479 aa12.66□□□□□ -0.38
PTCH1-211ENST00000488809 CADPSQ9ULU8 1353 aa12.66□□□□□ -0.38
PTCH1-211ENST00000488809 WDR62O43379 1518 aa12.65□□□□□ -0.38
PTCH1-211ENST00000488809 TRIM41Q8WV44 630 aa12.63□□□□□ -0.39
PTCH1-211ENST00000488809 CEP164Q9UPV0 1460 aa12.59□□□□□ -0.39
PTCH1-211ENST00000488809 WIZO95785 1651 aa12.59□□□□□ -0.39
PTCH1-211ENST00000488809 FANCD2Q9BXW9 1451 aa12.53□□□□□ -0.4
PTCH1-211ENST00000488809 PRDM2Q13029 1718 aa12.49□□□□□ -0.41
PTCH1-211ENST00000488809 OSCARQ8IYS5 282 aa12.48□□□□□ -0.41
PTCH1-211ENST00000488809 CFTRP13569 1480 aa12.47□□□□□ -0.41
PTCH1-211ENST00000488809 TOP2AP11388 1531 aaKnown RBP12.43□□□□□ -0.42
PTCH1-211ENST00000488809 URB2Q14146 1524 aaKnown RBP12.41□□□□□ -0.42
PTCH1-211ENST00000488809 RIMBP3CA6NJZ7 1639 aa12.37□□□□□ -0.43
PTCH1-211ENST00000488809 RIMBP3BA6NNM3 1639 aa12.37□□□□□ -0.43
PTCH1-211ENST00000488809 RIMBP3Q9UFD9 1639 aa12.37□□□□□ -0.43
PTCH1-211ENST00000488809 RSF1Q96T23 1441 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-211ENST00000488809 IFT140Q96RY7 1462 aa12.34□□□□□ -0.43
PTCH1-211ENST00000488809 ABCC8Q09428 1581 aa12.3□□□□□ -0.44
PTCH1-211ENST00000488809 ARHGEF11O15085 1522 aa12.29□□□□□ -0.44
PTCH1-211ENST00000488809 EIF4G3O43432 1585 aaKnown RBP12.27□□□□□ -0.44
PTCH1-211ENST00000488809 TOPBP1Q92547 1522 aa12.27□□□□□ -0.45
PTCH1-211ENST00000488809 ZNF608Q9ULD9 1512 aaPredicted RBP12.27□□□□□ -0.45
PTCH1-211ENST00000488809 CHD1O14646 1710 aa12.25□□□□□ -0.45
PTCH1-211ENST00000488809 CCDC88BA6NC98 1476 aa12.24□□□□□ -0.45
PTCH1-211ENST00000488809 DNMBPQ6XZF7 1577 aa12.24□□□□□ -0.45
PTCH1-211ENST00000488809 TARBP1Q13395 1621 aaKnown RBP12.19□□□□□ -0.46
PTCH1-211ENST00000488809 CYB5RLQ6IPT4 315 aa12.17□□□□□ -0.46
PTCH1-211ENST00000488809 WDR97A6NE52 1622 aa12.14□□□□□ -0.47
PTCH1-211ENST00000488809 AQRO60306 1485 aaKnown RBP eCLIP12.14□□□□□ -0.47
PTCH1-211ENST00000488809 TRHP20396 242 aaPredicted RBP12.13□□□□□ -0.47
PTCH1-211ENST00000488809 ARAP1Q96P48 1450 aa12.13□□□□□ -0.47
PTCH1-211ENST00000488809 FBLN2P98095 1184 aa12.12□□□□□ -0.47
PTCH1-211ENST00000488809 POLA1P09884 1462 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-211ENST00000488809 SYNJ1O43426 1573 aa12.09□□□□□ -0.47
PTCH1-211ENST00000488809 SOGA1O94964 1423 aa12.06□□□□□ -0.48
PTCH1-211ENST00000488809 SNAPC4Q5SXM2 1469 aa12.05□□□□□ -0.48
PTCH1-211ENST00000488809 MAGI1Q96QZ7 1491 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-211ENST00000488809 RAD54L2Q9Y4B4 1467 aa12.05□□□□□ -0.48
PTCH1-211ENST00000488809 CLASP1Q7Z460 1538 aa12.05□□□□□ -0.48
PTCH1-211ENST00000488809 TDRD9Q8NDG6 1382 aaKnown RBP12.03□□□□□ -0.48
PTCH1-211ENST00000488809 FGD5Q6ZNL6 1462 aa12.02□□□□□ -0.48
PTCH1-211ENST00000488809 CHMP7Q8WUX9 453 aaPredicted RBP12.02□□□□□ -0.49
PTCH1-211ENST00000488809 PBRM1Q86U86 1689 aa12.02□□□□□ -0.49
PTCH1-211ENST00000488809 GRIN2BQ13224 1484 aa12.01□□□□□ -0.49
PTCH1-211ENST00000488809 SYNJ2O15056 1496 aa11.99□□□□□ -0.49
PTCH1-211ENST00000488809 CUX1P39880 1505 aa11.96□□□□□ -0.49
PTCH1-211ENST00000488809 AEBP2Q6ZN18 517 aaPredicted RBP11.96□□□□□ -0.49
PTCH1-211ENST00000488809 GAPVD1Q14C86 1478 aa11.93□□□□□ -0.5
PTCH1-211ENST00000488809 ABCA5Q8WWZ7 1642 aa11.91□□□□□ -0.5
PTCH1-211ENST00000488809 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
PTCH1-211ENST00000488809 ADAMTS12P58397 1594 aa11.84□□□□□ -0.51
PTCH1-211ENST00000488809 GRIN2AQ12879 1464 aa11.84□□□□□ -0.51
PTCH1-211ENST00000488809 CEP170Q5SW79 1584 aa11.82□□□□□ -0.52
PTCH1-211ENST00000488809 SHROOM2Q13796 1616 aa11.81□□□□□ -0.52
PTCH1-211ENST00000488809 WRNQ14191 1432 aaPredicted RBP eCLIP11.8□□□□□ -0.52
PTCH1-211ENST00000488809 ERCC6L2Q5T890 1561 aa11.79□□□□□ -0.52
PTCH1-211ENST00000488809 KIF13AQ9H1H9 1805 aa11.79□□□□□ -0.52
PTCH1-211ENST00000488809 BIVM-ERCC5R4GMW8 1640 aa11.79□□□□□ -0.52
PTCH1-211ENST00000488809 NUP160Q12769 1436 aa11.79□□□□□ -0.52
PTCH1-211ENST00000488809 TOP2BQ02880 1626 aa11.78□□□□□ -0.52
PTCH1-211ENST00000488809 FHAD1B1AJZ9 1412 aa11.77□□□□□ -0.52
PTCH1-211ENST00000488809 ERICH3Q5RHP9 1530 aa11.76□□□□□ -0.53
PTCH1-211ENST00000488809 PRG4Q92954 1404 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-211ENST00000488809 NPM1P06748 294 aaKnown RBP eCLIP11.68□□□□□ -0.54
PTCH1-211ENST00000488809 RUSC2Q8N2Y8 1516 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms