RNA–Protein interactions for RNA: ENST00000488774.1

PTPRD-212, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 3

Gene PTPRD, Length 420 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-212ENST00000488774 NISCHQ9Y2I1 1504 aa16.14■□□□□ 0.18
PTPRD-212ENST00000488774 CCDC180Q9P1Z9 1646 aa14.35□□□□□ -0.11
PTPRD-212ENST00000488774 ABCC9O60706 1549 aa14.05□□□□□ -0.16
PTPRD-212ENST00000488774 ZCCHC6Q5VYS8 1495 aaKnown RBP13.46□□□□□ -0.25
PTPRD-212ENST00000488774 RB1CC1Q8TDY2 1594 aa13.43□□□□□ -0.26
PTPRD-212ENST00000488774 UNC13AQ9UPW8 1703 aa13.43□□□□□ -0.26
PTPRD-212ENST00000488774 NACADO15069 1562 aa13.41□□□□□ -0.26
PTPRD-212ENST00000488774 DCAF8L2P0C7V8 631 aa13.38□□□□□ -0.27
PTPRD-212ENST00000488774 MYO15BQ96JP2 1530 aa13.29□□□□□ -0.28
PTPRD-212ENST00000488774 DCAF1Q9Y4B6 1507 aa13.29□□□□□ -0.28
PTPRD-212ENST00000488774 BICRAQ9NZM4 1560 aa13.21□□□□□ -0.29
PTPRD-212ENST00000488774 AEBP2Q6ZN18 517 aaPredicted RBP13.21□□□□□ -0.29
PTPRD-212ENST00000488774 SCRIBQ14160 1630 aa13.17□□□□□ -0.3
PTPRD-212ENST00000488774 PABPN1Q86U42 306 aaKnown RBP eCLIP13.12□□□□□ -0.31
PTPRD-212ENST00000488774 DNAJC5BQ9UF47 199 aa12.97□□□□□ -0.33
PTPRD-212ENST00000488774 SHROOM4Q9ULL8 1493 aa12.81□□□□□ -0.36
PTPRD-212ENST00000488774 EIF4G1Q04637 1599 aaKnown RBP12.76□□□□□ -0.37
PTPRD-212ENST00000488774 CC2D2AQ9P2K1 1620 aa12.73□□□□□ -0.37
PTPRD-212ENST00000488774 CECR2Q9BXF3 1484 aa12.66□□□□□ -0.38
PTPRD-212ENST00000488774 SMARCA4P51532 1647 aa12.57□□□□□ -0.4
PTPRD-212ENST00000488774 MROH2BQ7Z745 1585 aa12.52□□□□□ -0.41
PTPRD-212ENST00000488774 BAZ1AQ9NRL2 1556 aaPredicted RBP12.45□□□□□ -0.42
PTPRD-212ENST00000488774 ATAD2BQ9ULI0 1458 aa12.44□□□□□ -0.42
PTPRD-212ENST00000488774 WIZO95785 1651 aa12.44□□□□□ -0.42
PTPRD-212ENST00000488774 PEG3Q9GZU2 1588 aa12.4□□□□□ -0.42
PTPRD-212ENST00000488774 CHIC1Q5VXU3 224 aa12.38□□□□□ -0.43
PTPRD-212ENST00000488774 NCAPD3P42695 1498 aa12.38□□□□□ -0.43
PTPRD-212ENST00000488774 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
PTPRD-212ENST00000488774 HMGXB3Q12766 1538 aa12.34□□□□□ -0.43
PTPRD-212ENST00000488774 RSF1Q96T23 1441 aaPredicted RBP12.31□□□□□ -0.44
PTPRD-212ENST00000488774 BAZ1BQ9UIG0 1483 aaKnown RBP12.28□□□□□ -0.44
PTPRD-212ENST00000488774 NESP48681 1621 aa12.23□□□□□ -0.45
PTPRD-212ENST00000488774 TOP2AP11388 1531 aaKnown RBP12.17□□□□□ -0.46
PTPRD-212ENST00000488774 KIF21AQ7Z4S6 1674 aa12.14□□□□□ -0.47
PTPRD-212ENST00000488774 LAMC3Q9Y6N6 1575 aa12.06□□□□□ -0.48
PTPRD-212ENST00000488774 CCDC88BA6NC98 1476 aa12.06□□□□□ -0.48
PTPRD-212ENST00000488774 THOC2Q8NI27 1593 aaKnown RBP12.04□□□□□ -0.48
PTPRD-212ENST00000488774 PRDM2Q13029 1718 aa12.03□□□□□ -0.48
PTPRD-212ENST00000488774 CADPSQ9ULU8 1353 aa11.99□□□□□ -0.49
PTPRD-212ENST00000488774 CFTRP13569 1480 aa11.97□□□□□ -0.49
PTPRD-212ENST00000488774 ERCC6Q03468 1493 aa11.97□□□□□ -0.49
PTPRD-212ENST00000488774 SUPT5HO00267 1087 aaKnown RBP11.96□□□□□ -0.49
PTPRD-212ENST00000488774 FANCD2Q9BXW9 1451 aa11.9□□□□□ -0.5
PTPRD-212ENST00000488774 PDS5BQ9NTI5 1447 aa11.88□□□□□ -0.51
PTPRD-212ENST00000488774 URB2Q14146 1524 aaKnown RBP11.87□□□□□ -0.51
PTPRD-212ENST00000488774 CEP164Q9UPV0 1460 aa11.86□□□□□ -0.51
PTPRD-212ENST00000488774 WDR62O43379 1518 aa11.86□□□□□ -0.51
PTPRD-212ENST00000488774 MRC2Q9UBG0 1479 aa11.85□□□□□ -0.51
PTPRD-212ENST00000488774 CUX2O14529 1486 aa11.84□□□□□ -0.51
PTPRD-212ENST00000488774 TOPBP1Q92547 1522 aa11.75□□□□□ -0.53
PTPRD-212ENST00000488774 CUX1P39880 1505 aa11.73□□□□□ -0.53
PTPRD-212ENST00000488774 DNMBPQ6XZF7 1577 aa11.72□□□□□ -0.53
PTPRD-212ENST00000488774 ABCC8Q09428 1581 aa11.71□□□□□ -0.53
PTPRD-212ENST00000488774 TARBP1Q13395 1621 aaKnown RBP11.7□□□□□ -0.54
PTPRD-212ENST00000488774 ZNF608Q9ULD9 1512 aaPredicted RBP11.69□□□□□ -0.54
PTPRD-212ENST00000488774 SYNJ1O43426 1573 aa11.67□□□□□ -0.54
PTPRD-212ENST00000488774 POLA1P09884 1462 aaPredicted RBP11.65□□□□□ -0.54
PTPRD-212ENST00000488774 RAD54L2Q9Y4B4 1467 aa11.65□□□□□ -0.54
PTPRD-212ENST00000488774 WDR97A6NE52 1622 aa11.65□□□□□ -0.54
PTPRD-212ENST00000488774 FGD5Q6ZNL6 1462 aa11.63□□□□□ -0.55
PTPRD-212ENST00000488774 BIVM-ERCC5R4GMW8 1640 aa11.63□□□□□ -0.55
PTPRD-212ENST00000488774 EIF4G3O43432 1585 aaKnown RBP11.62□□□□□ -0.55
PTPRD-212ENST00000488774 TOP2BQ02880 1626 aa11.59□□□□□ -0.55
PTPRD-212ENST00000488774 IFT140Q96RY7 1462 aa11.58□□□□□ -0.56
PTPRD-212ENST00000488774 AQRO60306 1485 aaKnown RBP eCLIP11.57□□□□□ -0.56
PTPRD-212ENST00000488774 CHD1O14646 1710 aa11.55□□□□□ -0.56
PTPRD-212ENST00000488774 PBRM1Q86U86 1689 aa11.55□□□□□ -0.56
PTPRD-212ENST00000488774 SOGA1O94964 1423 aa11.53□□□□□ -0.56
PTPRD-212ENST00000488774 WRNQ14191 1432 aaPredicted RBP eCLIP11.53□□□□□ -0.56
PTPRD-212ENST00000488774 ABCA5Q8WWZ7 1642 aa11.53□□□□□ -0.56
PTPRD-212ENST00000488774 TDRD9Q8NDG6 1382 aaKnown RBP11.52□□□□□ -0.57
PTPRD-212ENST00000488774 DNAJC5Q9H3Z4 198 aa11.49□□□□□ -0.57
PTPRD-212ENST00000488774 ABCA10Q8WWZ4 1543 aa11.48□□□□□ -0.57
PTPRD-212ENST00000488774 SNAPC4Q5SXM2 1469 aa11.44□□□□□ -0.58
PTPRD-212ENST00000488774 GAPVD1Q14C86 1478 aa11.42□□□□□ -0.58
PTPRD-212ENST00000488774 ADAMTS12P58397 1594 aa11.39□□□□□ -0.59
PTPRD-212ENST00000488774 RUSC2Q8N2Y8 1516 aa11.39□□□□□ -0.59
PTPRD-212ENST00000488774 GRIN2BQ13224 1484 aa11.38□□□□□ -0.59
PTPRD-212ENST00000488774 MAGI1Q96QZ7 1491 aaPredicted RBP11.35□□□□□ -0.59
PTPRD-212ENST00000488774 RIMBP3CA6NJZ7 1639 aa11.34□□□□□ -0.59
PTPRD-212ENST00000488774 RIMBP3BA6NNM3 1639 aa11.34□□□□□ -0.59
PTPRD-212ENST00000488774 RIMBP3Q9UFD9 1639 aa11.34□□□□□ -0.59
PTPRD-212ENST00000488774 CLASP1Q7Z460 1538 aa11.34□□□□□ -0.59
PTPRD-212ENST00000488774 CEP170Q5SW79 1584 aa11.33□□□□□ -0.6
PTPRD-212ENST00000488774 SYNJ2O15056 1496 aa11.32□□□□□ -0.6
PTPRD-212ENST00000488774 ERICH3Q5RHP9 1530 aa11.32□□□□□ -0.6
PTPRD-212ENST00000488774 OSCARQ8IYS5 282 aa11.31□□□□□ -0.6
PTPRD-212ENST00000488774 ERCC6L2Q5T890 1561 aa11.3□□□□□ -0.6
PTPRD-212ENST00000488774 FBLN2P98095 1184 aa11.3□□□□□ -0.6
PTPRD-212ENST00000488774 GRIN2AQ12879 1464 aa11.29□□□□□ -0.6
PTPRD-212ENST00000488774 IGF1RP08069 1367 aa11.28□□□□□ -0.6
PTPRD-212ENST00000488774 ARHGEF11O15085 1522 aa11.27□□□□□ -0.61
PTPRD-212ENST00000488774 CUL7Q14999 1698 aa11.25□□□□□ -0.61
PTPRD-212ENST00000488774 FHAD1B1AJZ9 1412 aa11.25□□□□□ -0.61
PTPRD-212ENST00000488774 CHMP7Q8WUX9 453 aaPredicted RBP11.24□□□□□ -0.61
PTPRD-212ENST00000488774 NUP160Q12769 1436 aa11.24□□□□□ -0.61
PTPRD-212ENST00000488774 KIF27Q86VH2 1401 aa11.24□□□□□ -0.61
PTPRD-212ENST00000488774 SHROOM2Q13796 1616 aa11.24□□□□□ -0.61
PTPRD-212ENST00000488774 ARAP1Q96P48 1450 aa11.21□□□□□ -0.61
PTPRD-212ENST00000488774 TRIM41Q8WV44 630 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms