RNA–Protein interactions for RNA: ENST00000488522.1

TTC3-221, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 5

Gene TTC3, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-221ENST00000488522 NISCHQ9Y2I1 1504 aa31.28■■■□□ 2.6
TTC3-221ENST00000488522 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
TTC3-221ENST00000488522 ABCC9O60706 1549 aa28.17■■■□□ 2.1
TTC3-221ENST00000488522 RB1CC1Q8TDY2 1594 aa26.85■■□□□ 1.89
TTC3-221ENST00000488522 NACADO15069 1562 aa26.67■■□□□ 1.86
TTC3-221ENST00000488522 DNAJC5BQ9UF47 199 aa26.55■■□□□ 1.84
TTC3-221ENST00000488522 MYO15BQ96JP2 1530 aa26.35■■□□□ 1.81
TTC3-221ENST00000488522 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
TTC3-221ENST00000488522 DCAF8L2P0C7V8 631 aa26.15■■□□□ 1.78
TTC3-221ENST00000488522 PABPN1Q86U42 306 aaKnown RBP eCLIP26.12■■□□□ 1.77
TTC3-221ENST00000488522 BICRAQ9NZM4 1560 aa26.11■■□□□ 1.77
TTC3-221ENST00000488522 DCAF1Q9Y4B6 1507 aa25.93■■□□□ 1.74
TTC3-221ENST00000488522 ZCCHC6Q5VYS8 1495 aaKnown RBP25.92■■□□□ 1.74
TTC3-221ENST00000488522 SHROOM4Q9ULL8 1493 aa25.85■■□□□ 1.73
TTC3-221ENST00000488522 SCRIBQ14160 1630 aa25.54■■□□□ 1.68
TTC3-221ENST00000488522 CC2D2AQ9P2K1 1620 aa25.51■■□□□ 1.67
TTC3-221ENST00000488522 EIF4G1Q04637 1599 aaKnown RBP25.45■■□□□ 1.66
TTC3-221ENST00000488522 AEBP2Q6ZN18 517 aaPredicted RBP25.45■■□□□ 1.66
TTC3-221ENST00000488522 CECR2Q9BXF3 1484 aa25.44■■□□□ 1.66
TTC3-221ENST00000488522 NCAPD3P42695 1498 aa24.62■■□□□ 1.53
TTC3-221ENST00000488522 DNAJC5Q9H3Z4 198 aa24.54■■□□□ 1.52
TTC3-221ENST00000488522 CHIC1Q5VXU3 224 aa24.53■■□□□ 1.52
TTC3-221ENST00000488522 ATAD2BQ9ULI0 1458 aa24.48■■□□□ 1.51
TTC3-221ENST00000488522 CUX2O14529 1486 aa24.47■■□□□ 1.51
TTC3-221ENST00000488522 HMGXB3Q12766 1538 aa24.45■■□□□ 1.5
TTC3-221ENST00000488522 SMARCA4P51532 1647 aa24.43■■□□□ 1.5
TTC3-221ENST00000488522 SMARCA2P51531 1590 aa24.43■■□□□ 1.5
TTC3-221ENST00000488522 ERCC6Q03468 1493 aa24.33■■□□□ 1.49
TTC3-221ENST00000488522 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
TTC3-221ENST00000488522 PEG3Q9GZU2 1588 aa24.29■■□□□ 1.48
TTC3-221ENST00000488522 BAZ1BQ9UIG0 1483 aaKnown RBP24.2■■□□□ 1.47
TTC3-221ENST00000488522 NESP48681 1621 aa24.17■■□□□ 1.46
TTC3-221ENST00000488522 LAMC3Q9Y6N6 1575 aa24.08■■□□□ 1.45
TTC3-221ENST00000488522 THOC2Q8NI27 1593 aaKnown RBP24.07■■□□□ 1.44
TTC3-221ENST00000488522 MROH2BQ7Z745 1585 aa24.06■■□□□ 1.44
TTC3-221ENST00000488522 KIF21AQ7Z4S6 1674 aa23.9■■□□□ 1.42
TTC3-221ENST00000488522 PDS5BQ9NTI5 1447 aa23.9■■□□□ 1.42
TTC3-221ENST00000488522 CADPSQ9ULU8 1353 aa23.8■■□□□ 1.4
TTC3-221ENST00000488522 WIZO95785 1651 aa23.74■■□□□ 1.39
TTC3-221ENST00000488522 WDR62O43379 1518 aa23.71■■□□□ 1.39
TTC3-221ENST00000488522 MRC2Q9UBG0 1479 aa23.71■■□□□ 1.39
TTC3-221ENST00000488522 CEP164Q9UPV0 1460 aa23.57■■□□□ 1.36
TTC3-221ENST00000488522 CFTRP13569 1480 aa23.55■■□□□ 1.36
TTC3-221ENST00000488522 FANCD2Q9BXW9 1451 aa23.52■■□□□ 1.36
TTC3-221ENST00000488522 RSF1Q96T23 1441 aaPredicted RBP23.5■■□□□ 1.35
TTC3-221ENST00000488522 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
TTC3-221ENST00000488522 URB2Q14146 1524 aaKnown RBP23.36■■□□□ 1.33
TTC3-221ENST00000488522 PRDM2Q13029 1718 aa23.33■■□□□ 1.32
TTC3-221ENST00000488522 TRIM41Q8WV44 630 aa23.23■■□□□ 1.31
TTC3-221ENST00000488522 OSCARQ8IYS5 282 aa23.19■■□□□ 1.3
TTC3-221ENST00000488522 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
TTC3-221ENST00000488522 IFT140Q96RY7 1462 aa23.13■■□□□ 1.29
TTC3-221ENST00000488522 TOPBP1Q92547 1522 aa23.08■■□□□ 1.28
TTC3-221ENST00000488522 ZNF608Q9ULD9 1512 aaPredicted RBP23.06■■□□□ 1.28
TTC3-221ENST00000488522 ABCC8Q09428 1581 aa23.05■■□□□ 1.28
TTC3-221ENST00000488522 DNMBPQ6XZF7 1577 aa23.01■■□□□ 1.27
TTC3-221ENST00000488522 RIMBP3CA6NJZ7 1639 aa22.99■■□□□ 1.27
TTC3-221ENST00000488522 RIMBP3BA6NNM3 1639 aa22.99■■□□□ 1.27
TTC3-221ENST00000488522 RIMBP3Q9UFD9 1639 aa22.99■■□□□ 1.27
TTC3-221ENST00000488522 EIF4G3O43432 1585 aaKnown RBP22.97■■□□□ 1.27
TTC3-221ENST00000488522 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
TTC3-221ENST00000488522 ARHGEF11O15085 1522 aa22.9■■□□□ 1.26
TTC3-221ENST00000488522 POLA1P09884 1462 aaPredicted RBP22.84■■□□□ 1.25
TTC3-221ENST00000488522 CHD1O14646 1710 aa22.81■■□□□ 1.24
TTC3-221ENST00000488522 AQRO60306 1485 aaKnown RBP eCLIP22.79■■□□□ 1.245e-8■■■■■ 33.6
TTC3-221ENST00000488522 WDR97A6NE52 1622 aa22.76■■□□□ 1.23
TTC3-221ENST00000488522 RAD54L2Q9Y4B4 1467 aa22.68■■□□□ 1.22
TTC3-221ENST00000488522 ARAP1Q96P48 1450 aa22.67■■□□□ 1.22
TTC3-221ENST00000488522 SOGA1O94964 1423 aa22.67■■□□□ 1.22
TTC3-221ENST00000488522 FGD5Q6ZNL6 1462 aa22.65■■□□□ 1.22
TTC3-221ENST00000488522 TDRD9Q8NDG6 1382 aaKnown RBP22.62■■□□□ 1.21
TTC3-221ENST00000488522 CUX1P39880 1505 aa22.62■■□□□ 1.21
TTC3-221ENST00000488522 CLASP1Q7Z460 1538 aa22.62■■□□□ 1.21
TTC3-221ENST00000488522 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
TTC3-221ENST00000488522 MAGI1Q96QZ7 1491 aaPredicted RBP22.6■■□□□ 1.21
TTC3-221ENST00000488522 CYB5RLQ6IPT4 315 aa22.59■■□□□ 1.21
TTC3-221ENST00000488522 FBLN2P98095 1184 aa22.55■■□□□ 1.2
TTC3-221ENST00000488522 GRIN2BQ13224 1484 aa22.54■■□□□ 1.2
TTC3-221ENST00000488522 SYNJ1O43426 1573 aa22.54■■□□□ 1.2
TTC3-221ENST00000488522 SYNJ2O15056 1496 aa22.5■■□□□ 1.19
TTC3-221ENST00000488522 PBRM1Q86U86 1689 aa22.46■■□□□ 1.19
TTC3-221ENST00000488522 CHMP7Q8WUX9 453 aaPredicted RBP22.44■■□□□ 1.18
TTC3-221ENST00000488522 ABCA10Q8WWZ4 1543 aa22.44■■□□□ 1.18
TTC3-221ENST00000488522 ABCA5Q8WWZ7 1642 aa22.43■■□□□ 1.18
TTC3-221ENST00000488522 GAPVD1Q14C86 1478 aa22.42■■□□□ 1.18
TTC3-221ENST00000488522 TRHP20396 242 aaPredicted RBP22.34■■□□□ 1.17
TTC3-221ENST00000488522 BIVM-ERCC5R4GMW8 1640 aa22.27■■□□□ 1.16
TTC3-221ENST00000488522 ADAMTS12P58397 1594 aa22.26■■□□□ 1.15
TTC3-221ENST00000488522 WRNQ14191 1432 aaPredicted RBP eCLIP22.26■■□□□ 1.15
TTC3-221ENST00000488522 GRIN2AQ12879 1464 aa22.26■■□□□ 1.15
TTC3-221ENST00000488522 TOP2BQ02880 1626 aa22.25■■□□□ 1.15
TTC3-221ENST00000488522 NUP160Q12769 1436 aa22.23■■□□□ 1.15
TTC3-221ENST00000488522 CEP170Q5SW79 1584 aa22.2■■□□□ 1.14
TTC3-221ENST00000488522 SHROOM2Q13796 1616 aa22.18■■□□□ 1.14
TTC3-221ENST00000488522 ERCC6L2Q5T890 1561 aa22.16■■□□□ 1.14
TTC3-221ENST00000488522 ERICH3Q5RHP9 1530 aa22.16■■□□□ 1.14
TTC3-221ENST00000488522 FHAD1B1AJZ9 1412 aa22.15■■□□□ 1.14
TTC3-221ENST00000488522 SUPT5HO00267 1087 aaKnown RBP22.13■■□□□ 1.13
TTC3-221ENST00000488522 RUSC2Q8N2Y8 1516 aa21.96■■□□□ 1.11
TTC3-221ENST00000488522 PRG4Q92954 1404 aaPredicted RBP21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms