RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 NISCHQ9Y2I1 1504 aa28.59■■■□□ 2.17
HLA-DOB-209ENST00000488325 ABCC9O60706 1549 aa26.97■■□□□ 1.91
HLA-DOB-209ENST00000488325 DNAJC5BQ9UF47 199 aa26.12■■□□□ 1.77
HLA-DOB-209ENST00000488325 CCDC180Q9P1Z9 1646 aa26.03■■□□□ 1.76
HLA-DOB-209ENST00000488325 RB1CC1Q8TDY2 1594 aa25.23■■□□□ 1.63
HLA-DOB-209ENST00000488325 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
HLA-DOB-209ENST00000488325 NACADO15069 1562 aa24.84■■□□□ 1.57
HLA-DOB-209ENST00000488325 UNC13AQ9UPW8 1703 aa24.64■■□□□ 1.54
HLA-DOB-209ENST00000488325 DNAJC5Q9H3Z4 198 aa24.63■■□□□ 1.53
HLA-DOB-209ENST00000488325 BICRAQ9NZM4 1560 aa24.55■■□□□ 1.52
HLA-DOB-209ENST00000488325 DCAF8L2P0C7V8 631 aa24.55■■□□□ 1.52
HLA-DOB-209ENST00000488325 CECR2Q9BXF3 1484 aa24.38■■□□□ 1.49
HLA-DOB-209ENST00000488325 CC2D2AQ9P2K1 1620 aa24.29■■□□□ 1.48
HLA-DOB-209ENST00000488325 MYO15BQ96JP2 1530 aa24.19■■□□□ 1.46
HLA-DOB-209ENST00000488325 SHROOM4Q9ULL8 1493 aa24.1■■□□□ 1.45
HLA-DOB-209ENST00000488325 EIF4G1Q04637 1599 aaKnown RBP24.02■■□□□ 1.44
HLA-DOB-209ENST00000488325 SCRIBQ14160 1630 aa23.7■■□□□ 1.38
HLA-DOB-209ENST00000488325 CUX2O14529 1486 aa23.6■■□□□ 1.37
HLA-DOB-209ENST00000488325 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
HLA-DOB-209ENST00000488325 ZCCHC6Q5VYS8 1495 aaKnown RBP23.5■■□□□ 1.35
HLA-DOB-209ENST00000488325 ERCC6Q03468 1493 aa23.34■■□□□ 1.33
HLA-DOB-209ENST00000488325 TRIM41Q8WV44 630 aa23.19■■□□□ 1.3
HLA-DOB-209ENST00000488325 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
HLA-DOB-209ENST00000488325 NESP48681 1621 aa22.91■■□□□ 1.26
HLA-DOB-209ENST00000488325 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
HLA-DOB-209ENST00000488325 ATAD2BQ9ULI0 1458 aa22.77■■□□□ 1.24
HLA-DOB-209ENST00000488325 HMGXB3Q12766 1538 aa22.69■■□□□ 1.22
HLA-DOB-209ENST00000488325 SMARCA2P51531 1590 aa22.66■■□□□ 1.22
HLA-DOB-209ENST00000488325 LAMC3Q9Y6N6 1575 aa22.57■■□□□ 1.2
HLA-DOB-209ENST00000488325 KIF21AQ7Z4S6 1674 aa22.55■■□□□ 1.2
HLA-DOB-209ENST00000488325 SMARCA4P51532 1647 aa22.49■■□□□ 1.19
HLA-DOB-209ENST00000488325 BAZ1BQ9UIG0 1483 aaKnown RBP22.49■■□□□ 1.19
HLA-DOB-209ENST00000488325 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
HLA-DOB-209ENST00000488325 BAZ1AQ9NRL2 1556 aaPredicted RBP22.43■■□□□ 1.18
HLA-DOB-209ENST00000488325 OSCARQ8IYS5 282 aa22.36■■□□□ 1.17
HLA-DOB-209ENST00000488325 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
HLA-DOB-209ENST00000488325 WDR62O43379 1518 aa22.31■■□□□ 1.16
HLA-DOB-209ENST00000488325 PEG3Q9GZU2 1588 aa22.28■■□□□ 1.16
HLA-DOB-209ENST00000488325 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
HLA-DOB-209ENST00000488325 RIMBP3CA6NJZ7 1639 aa22.18■■□□□ 1.14
HLA-DOB-209ENST00000488325 RIMBP3BA6NNM3 1639 aa22.18■■□□□ 1.14
HLA-DOB-209ENST00000488325 RIMBP3Q9UFD9 1639 aa22.18■■□□□ 1.14
HLA-DOB-209ENST00000488325 CEP164Q9UPV0 1460 aa22.08■■□□□ 1.12
HLA-DOB-209ENST00000488325 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
HLA-DOB-209ENST00000488325 ARHGEF11O15085 1522 aa22.02■■□□□ 1.12
HLA-DOB-209ENST00000488325 AEBP2Q6ZN18 517 aaPredicted RBP22■■□□□ 1.11
HLA-DOB-209ENST00000488325 FANCD2Q9BXW9 1451 aa21.97■■□□□ 1.11
HLA-DOB-209ENST00000488325 TRHP20396 242 aaPredicted RBP21.97■■□□□ 1.11
HLA-DOB-209ENST00000488325 CYB5RLQ6IPT4 315 aa21.92■■□□□ 1.1
HLA-DOB-209ENST00000488325 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
HLA-DOB-209ENST00000488325 CFTRP13569 1480 aa21.77■■□□□ 1.07
HLA-DOB-209ENST00000488325 ARAP1Q96P48 1450 aa21.76■■□□□ 1.07
HLA-DOB-209ENST00000488325 ZNF608Q9ULD9 1512 aaPredicted RBP21.75■■□□□ 1.07
HLA-DOB-209ENST00000488325 WIZO95785 1651 aa21.72■■□□□ 1.07
HLA-DOB-209ENST00000488325 IFT140Q96RY7 1462 aa21.66■■□□□ 1.06
HLA-DOB-209ENST00000488325 RSF1Q96T23 1441 aaPredicted RBP21.58■■□□□ 1.05
HLA-DOB-209ENST00000488325 EIF4G3O43432 1585 aaKnown RBP21.56■■□□□ 1.04
HLA-DOB-209ENST00000488325 CHD1O14646 1710 aa21.55■■□□□ 1.04
HLA-DOB-209ENST00000488325 FBLN2P98095 1184 aa21.47■■□□□ 1.03
HLA-DOB-209ENST00000488325 TOPBP1Q92547 1522 aa21.46■■□□□ 1.03
HLA-DOB-209ENST00000488325 AQRO60306 1485 aaKnown RBP eCLIP21.43■■□□□ 1.02
HLA-DOB-209ENST00000488325 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
HLA-DOB-209ENST00000488325 TOP2AP11388 1531 aaKnown RBP21.38■■□□□ 1.01
HLA-DOB-209ENST00000488325 TARBP1Q13395 1621 aaKnown RBP21.33■■□□□ 1
HLA-DOB-209ENST00000488325 ABCC8Q09428 1581 aa21.32■■□□□ 1
HLA-DOB-209ENST00000488325 CLASP1Q7Z460 1538 aa21.31■■□□□ 1
HLA-DOB-209ENST00000488325 DNMBPQ6XZF7 1577 aa21.28■■□□□ 1
HLA-DOB-209ENST00000488325 SUPT5HO00267 1087 aaKnown RBP21.27■■□□□ 1
HLA-DOB-209ENST00000488325 ILDR1Q86SU0 546 aaPredicted RBP21.21■□□□□ 0.99
HLA-DOB-209ENST00000488325 SYNJ1O43426 1573 aa21.19■□□□□ 0.98
HLA-DOB-209ENST00000488325 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
HLA-DOB-209ENST00000488325 SNAPC4Q5SXM2 1469 aa21.18■□□□□ 0.98
HLA-DOB-209ENST00000488325 GAPVD1Q14C86 1478 aa21.16■□□□□ 0.98
HLA-DOB-209ENST00000488325 TDRD9Q8NDG6 1382 aaKnown RBP21.16■□□□□ 0.98
HLA-DOB-209ENST00000488325 CCDC88BA6NC98 1476 aa21.15■□□□□ 0.98
HLA-DOB-209ENST00000488325 CHMP7Q8WUX9 453 aaPredicted RBP21.15■□□□□ 0.98
HLA-DOB-209ENST00000488325 RAD54L2Q9Y4B4 1467 aa21.13■□□□□ 0.97
HLA-DOB-209ENST00000488325 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
HLA-DOB-209ENST00000488325 SOGA1O94964 1423 aa21.06■□□□□ 0.96
HLA-DOB-209ENST00000488325 SYNJ2O15056 1496 aa21.02■□□□□ 0.96
HLA-DOB-209ENST00000488325 WDR97A6NE52 1622 aa21.02■□□□□ 0.96
HLA-DOB-209ENST00000488325 CHIC1Q5VXU3 224 aa20.99■□□□□ 0.95
HLA-DOB-209ENST00000488325 GRIN2BQ13224 1484 aa20.98■□□□□ 0.95
HLA-DOB-209ENST00000488325 ERCC6L2Q5T890 1561 aa20.93■□□□□ 0.94
HLA-DOB-209ENST00000488325 FGD5Q6ZNL6 1462 aa20.92■□□□□ 0.94
HLA-DOB-209ENST00000488325 KIF13AQ9H1H9 1805 aa20.91■□□□□ 0.94
HLA-DOB-209ENST00000488325 KDM4FA0A1W2PPD8 638 aa20.9■□□□□ 0.94
HLA-DOB-209ENST00000488325 PBRM1Q86U86 1689 aa20.81■□□□□ 0.92
HLA-DOB-209ENST00000488325 CEP170Q5SW79 1584 aa20.78■□□□□ 0.92
HLA-DOB-209ENST00000488325 CUX1P39880 1505 aa20.75■□□□□ 0.91
HLA-DOB-209ENST00000488325 FAM69CQ0P6D2 419 aa20.73■□□□□ 0.91
HLA-DOB-209ENST00000488325 GRIN2AQ12879 1464 aa20.72■□□□□ 0.91
HLA-DOB-209ENST00000488325 ABCC10Q5T3U5 1492 aa20.7■□□□□ 0.9
HLA-DOB-209ENST00000488325 KDM6BO15054 1643 aa20.68■□□□□ 0.9
HLA-DOB-209ENST00000488325 SHROOM2Q13796 1616 aa20.68■□□□□ 0.9
HLA-DOB-209ENST00000488325 NUP160Q12769 1436 aa20.68■□□□□ 0.9
HLA-DOB-209ENST00000488325 ABCA5Q8WWZ7 1642 aa20.67■□□□□ 0.9
HLA-DOB-209ENST00000488325 DIP2BQ9P265 1576 aa20.62■□□□□ 0.89
HLA-DOB-209ENST00000488325 ABCA10Q8WWZ4 1543 aa20.62■□□□□ 0.89
HLA-DOB-209ENST00000488325 ADAMTS12P58397 1594 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms