RNA–Protein interactions for RNA: ENST00000487667.5

PHF1-209, Transcript of PHD finger protein 1, humanhuman

TSL 5

Gene PHF1, Length 1,930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-209ENST00000487667 NISCHQ9Y2I1 1504 aa45.61■■■■■ 4.89
PHF1-209ENST00000487667 CCDC180Q9P1Z9 1646 aa39.77■■■■□ 3.96
PHF1-209ENST00000487667 ZCCHC6Q5VYS8 1495 aaKnown RBP38.35■■■■□ 3.73
PHF1-209ENST00000487667 DCAF1Q9Y4B6 1507 aa37.84■■■■□ 3.65
PHF1-209ENST00000487667 ABCC9O60706 1549 aa37.77■■■■□ 3.64
PHF1-209ENST00000487667 DCAF8L2P0C7V8 631 aa37.53■■■■□ 3.6
PHF1-209ENST00000487667 MYO15BQ96JP2 1530 aa37.36■■■■□ 3.57
PHF1-209ENST00000487667 SHROOM4Q9ULL8 1493 aa37.12■■■■□ 3.53
PHF1-209ENST00000487667 NACADO15069 1562 aa37.01■■■■□ 3.51
PHF1-209ENST00000487667 RB1CC1Q8TDY2 1594 aa36.65■■■■□ 3.46
PHF1-209ENST00000487667 SCRIBQ14160 1630 aa36.41■■■■□ 3.42
PHF1-209ENST00000487667 SUPT5HO00267 1087 aaKnown RBP35.89■■■■□ 3.34
PHF1-209ENST00000487667 UNC13AQ9UPW8 1703 aa35.82■■■■□ 3.32
PHF1-209ENST00000487667 PABPN1Q86U42 306 aaKnown RBP eCLIP35.61■■■■□ 3.295e-7■■■□□ 18
PHF1-209ENST00000487667 BICRAQ9NZM4 1560 aa35.52■■■■□ 3.28
PHF1-209ENST00000487667 RSF1Q96T23 1441 aaPredicted RBP35.41■■■■□ 3.26
PHF1-209ENST00000487667 CECR2Q9BXF3 1484 aa35.29■■■■□ 3.24
PHF1-209ENST00000487667 BAZ1AQ9NRL2 1556 aaPredicted RBP35.26■■■■□ 3.23
PHF1-209ENST00000487667 MROH2BQ7Z745 1585 aa35.15■■■■□ 3.22
PHF1-209ENST00000487667 SMARCA4P51532 1647 aa35■■■■□ 3.19
PHF1-209ENST00000487667 WIZO95785 1651 aa34.86■■■■□ 3.17
PHF1-209ENST00000487667 PEG3Q9GZU2 1588 aa34.65■■■■□ 3.14
PHF1-209ENST00000487667 TOP2AP11388 1531 aaKnown RBP34.63■■■■□ 3.13
PHF1-209ENST00000487667 CHIC1Q5VXU3 224 aa34.51■■■■□ 3.12
PHF1-209ENST00000487667 EIF4G1Q04637 1599 aaKnown RBP34.51■■■■□ 3.12
PHF1-209ENST00000487667 SMARCA2P51531 1590 aa34.47■■■■□ 3.11
PHF1-209ENST00000487667 ATAD2BQ9ULI0 1458 aa34.39■■■■□ 3.1
PHF1-209ENST00000487667 BAZ1BQ9UIG0 1483 aaKnown RBP34.23■■■■□ 3.07
PHF1-209ENST00000487667 CCDC88BA6NC98 1476 aa34.21■■■■□ 3.07
PHF1-209ENST00000487667 NCAPD3P42695 1498 aa34.12■■■■□ 3.05
PHF1-209ENST00000487667 CC2D2AQ9P2K1 1620 aa34.12■■■■□ 3.05
PHF1-209ENST00000487667 HMGXB3Q12766 1538 aa34.11■■■■□ 3.05
PHF1-209ENST00000487667 TRIM41Q8WV44 630 aa33.86■■■■□ 3.01
PHF1-209ENST00000487667 DNAJC5BQ9UF47 199 aa33.75■■■□□ 2.99
PHF1-209ENST00000487667 ABCC8Q09428 1581 aa33.46■■■□□ 2.95
PHF1-209ENST00000487667 CFTRP13569 1480 aa33.39■■■□□ 2.94
PHF1-209ENST00000487667 WRNQ14191 1432 aaPredicted RBP eCLIP33.38■■■□□ 2.93
PHF1-209ENST00000487667 PRDM2Q13029 1718 aa33.25■■■□□ 2.91
PHF1-209ENST00000487667 CADPSQ9ULU8 1353 aa33.24■■■□□ 2.91
PHF1-209ENST00000487667 EEA1Q15075 1411 aa33.15■■■□□ 2.9
PHF1-209ENST00000487667 SYNJ1O43426 1573 aa33.13■■■□□ 2.89
PHF1-209ENST00000487667 TOP2BQ02880 1626 aa33.09■■■□□ 2.89
PHF1-209ENST00000487667 LOC105371045A0A1W2PR82 267 aa33.08■■■□□ 2.89
PHF1-209ENST00000487667 FAM9AQ8IZU1 332 aaPredicted RBP33.06■■■□□ 2.88
PHF1-209ENST00000487667 BIVM-ERCC5R4GMW8 1640 aa33.05■■■□□ 2.88
PHF1-209ENST00000487667 NESP48681 1621 aa33.01■■■□□ 2.87
PHF1-209ENST00000487667 LAMC3Q9Y6N6 1575 aa32.94■■■□□ 2.86
PHF1-209ENST00000487667 SOGA1O94964 1423 aa32.9■■■□□ 2.86
PHF1-209ENST00000487667 CUX1P39880 1505 aa32.88■■■□□ 2.85
PHF1-209ENST00000487667 FANCD2Q9BXW9 1451 aa32.83■■■□□ 2.85
PHF1-209ENST00000487667 CSRNP3Q8WYN3 585 aa32.81■■■□□ 2.84
PHF1-209ENST00000487667 PDS5BQ9NTI5 1447 aa32.75■■■□□ 2.83
PHF1-209ENST00000487667 RUSC2Q8N2Y8 1516 aa32.7■■■□□ 2.83
PHF1-209ENST00000487667 CEP164Q9UPV0 1460 aa32.64■■■□□ 2.82
PHF1-209ENST00000487667 DNMBPQ6XZF7 1577 aa32.62■■■□□ 2.81
PHF1-209ENST00000487667 KIF21BO75037 1637 aa32.59■■■□□ 2.81
PHF1-209ENST00000487667 GOLGA3Q08378 1498 aa32.59■■■□□ 2.81
PHF1-209ENST00000487667 KIF27Q86VH2 1401 aa32.57■■■□□ 2.8
PHF1-209ENST00000487667 KIF21AQ7Z4S6 1674 aa32.53■■■□□ 2.8
PHF1-209ENST00000487667 TNIKQ9UKE5 1360 aa32.53■■■□□ 2.8
PHF1-209ENST00000487667 FGD5Q6ZNL6 1462 aa32.51■■■□□ 2.8
PHF1-209ENST00000487667 TOPBP1Q92547 1522 aa32.49■■■□□ 2.79
PHF1-209ENST00000487667 EHMT2Q96KQ7 1210 aa32.47■■■□□ 2.79
PHF1-209ENST00000487667 ERCC6Q03468 1493 aa32.44■■■□□ 2.78
PHF1-209ENST00000487667 URB2Q14146 1524 aaKnown RBP32.38■■■□□ 2.77
PHF1-209ENST00000487667 ERICH3Q5RHP9 1530 aa32.38■■■□□ 2.77
PHF1-209ENST00000487667 UBTFP17480 764 aaKnown RBP32.38■■■□□ 2.77
PHF1-209ENST00000487667 CUX2O14529 1486 aa32.35■■■□□ 2.77
PHF1-209ENST00000487667 PRXQ9BXM0 1461 aa32.35■■■□□ 2.77
PHF1-209ENST00000487667 POLA1P09884 1462 aaPredicted RBP32.34■■■□□ 2.77
PHF1-209ENST00000487667 MRC2Q9UBG0 1479 aa32.32■■■□□ 2.76
PHF1-209ENST00000487667 ABCA10Q8WWZ4 1543 aa32.3■■■□□ 2.76
PHF1-209ENST00000487667 CEP162Q5TB80 1403 aa32.3■■■□□ 2.76
PHF1-209ENST00000487667 RAPGEF2Q9Y4G8 1499 aa32.26■■■□□ 2.75
PHF1-209ENST00000487667 IGF1RP08069 1367 aa32.18■■■□□ 2.74
PHF1-209ENST00000487667 RAD54L2Q9Y4B4 1467 aa32.16■■■□□ 2.74
PHF1-209ENST00000487667 WDR62O43379 1518 aa32.13■■■□□ 2.73
PHF1-209ENST00000487667 WDR97A6NE52 1622 aa32.12■■■□□ 2.73
PHF1-209ENST00000487667 THOC2Q8NI27 1593 aaKnown RBP32.11■■■□□ 2.73
PHF1-209ENST00000487667 CARMIL1Q5VZK9 1371 aa32.05■■■□□ 2.72
PHF1-209ENST00000487667 CLIP1P30622 1438 aa32.03■■■□□ 2.72
PHF1-209ENST00000487667 CUL7Q14999 1698 aa32■■■□□ 2.71
PHF1-209ENST00000487667 ABCA5Q8WWZ7 1642 aa31.98■■■□□ 2.71
PHF1-209ENST00000487667 TARBP1Q13395 1621 aaKnown RBP31.98■■■□□ 2.71
PHF1-209ENST00000487667 TRIM26Q12899 539 aaPredicted RBP31.95■■■□□ 2.71
PHF1-209ENST00000487667 GAPVD1Q14C86 1478 aa31.92■■■□□ 2.7
PHF1-209ENST00000487667 IFT140Q96RY7 1462 aa31.89■■■□□ 2.7
PHF1-209ENST00000487667 TDRD9Q8NDG6 1382 aaKnown RBP31.87■■■□□ 2.69
PHF1-209ENST00000487667 PCGF6Q9BYE7 350 aa31.84■■■□□ 2.69
PHF1-209ENST00000487667 VPS8Q8N3P4 1428 aa31.81■■■□□ 2.68
PHF1-209ENST00000487667 AQRO60306 1485 aaKnown RBP eCLIP31.72■■■□□ 2.678e-8■■■□□ 18.9
PHF1-209ENST00000487667 ZNF608Q9ULD9 1512 aaPredicted RBP31.72■■■□□ 2.67
PHF1-209ENST00000487667 PBRM1Q86U86 1689 aa31.69■■■□□ 2.66
PHF1-209ENST00000487667 GRIN2BQ13224 1484 aa31.68■■■□□ 2.66
PHF1-209ENST00000487667 FHAD1B1AJZ9 1412 aa31.63■■■□□ 2.65
PHF1-209ENST00000487667 ARAP1Q96P48 1450 aa31.63■■■□□ 2.65
PHF1-209ENST00000487667 CTTNBP2Q8WZ74 1663 aa31.61■■■□□ 2.65
PHF1-209ENST00000487667 ARHGAP35Q9NRY4 1499 aa31.61■■■□□ 2.65
PHF1-209ENST00000487667 RANGAP1P46060 587 aaPredicted RBP31.61■■■□□ 2.65
PHF1-209ENST00000487667 APLP2Q06481 763 aa31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms