RNA–Protein interactions for RNA: ENST00000487068.1

NEK4-204, Transcript of NIMA related kinase 4, humanhuman

TSL 2

Gene NEK4, Length 631 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-204ENST00000487068 NISCHQ9Y2I1 1504 aa24.77■■□□□ 1.56
NEK4-204ENST00000487068 CCDC180Q9P1Z9 1646 aa22.18■■□□□ 1.14
NEK4-204ENST00000487068 ABCC9O60706 1549 aa22.01■■□□□ 1.11
NEK4-204ENST00000487068 RB1CC1Q8TDY2 1594 aa20.85■□□□□ 0.93
NEK4-204ENST00000487068 DNAJC5BQ9UF47 199 aa20.83■□□□□ 0.93
NEK4-204ENST00000487068 NACADO15069 1562 aa20.75■□□□□ 0.91
NEK4-204ENST00000487068 DCAF8L2P0C7V8 631 aa20.73■□□□□ 0.91
NEK4-204ENST00000487068 ZCCHC6Q5VYS8 1495 aaKnown RBP20.65■□□□□ 0.9
NEK4-204ENST00000487068 MYO15BQ96JP2 1530 aa20.53■□□□□ 0.88
NEK4-204ENST00000487068 UNC13AQ9UPW8 1703 aa20.51■□□□□ 0.87
NEK4-204ENST00000487068 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
NEK4-204ENST00000487068 PABPN1Q86U42 306 aaKnown RBP eCLIP20.4■□□□□ 0.86
NEK4-204ENST00000487068 SCRIBQ14160 1630 aa20.25■□□□□ 0.83
NEK4-204ENST00000487068 CHIC1Q5VXU3 224 aa20.23■□□□□ 0.83
NEK4-204ENST00000487068 BICRAQ9NZM4 1560 aa20.22■□□□□ 0.83
NEK4-204ENST00000487068 SHROOM4Q9ULL8 1493 aa19.97■□□□□ 0.79
NEK4-204ENST00000487068 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
NEK4-204ENST00000487068 CECR2Q9BXF3 1484 aa19.86■□□□□ 0.77
NEK4-204ENST00000487068 AEBP2Q6ZN18 517 aaPredicted RBP19.81■□□□□ 0.76
NEK4-204ENST00000487068 EIF4G1Q04637 1599 aaKnown RBP19.77■□□□□ 0.76
NEK4-204ENST00000487068 DNAJC5Q9H3Z4 198 aa19.36■□□□□ 0.69
NEK4-204ENST00000487068 SMARCA4P51532 1647 aa19.31■□□□□ 0.68
NEK4-204ENST00000487068 BAZ1AQ9NRL2 1556 aaPredicted RBP19.26■□□□□ 0.67
NEK4-204ENST00000487068 SMARCA2P51531 1590 aa19.16■□□□□ 0.66
NEK4-204ENST00000487068 CUX2O14529 1486 aa19.11■□□□□ 0.65
NEK4-204ENST00000487068 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
NEK4-204ENST00000487068 ATAD2BQ9ULI0 1458 aa19.09■□□□□ 0.65
NEK4-204ENST00000487068 HMGXB3Q12766 1538 aa19.07■□□□□ 0.64
NEK4-204ENST00000487068 NCAPD3P42695 1498 aa19.04■□□□□ 0.64
NEK4-204ENST00000487068 ERCC6Q03468 1493 aa19.04■□□□□ 0.64
NEK4-204ENST00000487068 PEG3Q9GZU2 1588 aa19.04■□□□□ 0.64
NEK4-204ENST00000487068 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
NEK4-204ENST00000487068 WIZO95785 1651 aa19■□□□□ 0.63
NEK4-204ENST00000487068 RSF1Q96T23 1441 aaPredicted RBP18.82■□□□□ 0.6
NEK4-204ENST00000487068 NESP48681 1621 aa18.82■□□□□ 0.6
NEK4-204ENST00000487068 TOP2AP11388 1531 aaKnown RBP18.74■□□□□ 0.59
NEK4-204ENST00000487068 THOC2Q8NI27 1593 aaKnown RBP18.72■□□□□ 0.59
NEK4-204ENST00000487068 LAMC3Q9Y6N6 1575 aa18.68■□□□□ 0.58
NEK4-204ENST00000487068 KIF21AQ7Z4S6 1674 aa18.63■□□□□ 0.57
NEK4-204ENST00000487068 PRDM2Q13029 1718 aa18.57■□□□□ 0.56
NEK4-204ENST00000487068 PDS5BQ9NTI5 1447 aa18.56■□□□□ 0.56
NEK4-204ENST00000487068 CADPSQ9ULU8 1353 aa18.5■□□□□ 0.55
NEK4-204ENST00000487068 CCDC88BA6NC98 1476 aa18.45■□□□□ 0.54
NEK4-204ENST00000487068 MRC2Q9UBG0 1479 aa18.42■□□□□ 0.54
NEK4-204ENST00000487068 TRIM41Q8WV44 630 aa18.42■□□□□ 0.54
NEK4-204ENST00000487068 CFTRP13569 1480 aa18.41■□□□□ 0.54
NEK4-204ENST00000487068 SUPT5HO00267 1087 aaKnown RBP18.41■□□□□ 0.54
NEK4-204ENST00000487068 CEP164Q9UPV0 1460 aa18.39■□□□□ 0.54
NEK4-204ENST00000487068 WDR62O43379 1518 aa18.39■□□□□ 0.54
NEK4-204ENST00000487068 FANCD2Q9BXW9 1451 aa18.38■□□□□ 0.53
NEK4-204ENST00000487068 URB2Q14146 1524 aaKnown RBP18.18■□□□□ 0.5
NEK4-204ENST00000487068 OSCARQ8IYS5 282 aa18.15■□□□□ 0.5
NEK4-204ENST00000487068 DNMBPQ6XZF7 1577 aa18.11■□□□□ 0.49
NEK4-204ENST00000487068 TOPBP1Q92547 1522 aa18.08■□□□□ 0.48
NEK4-204ENST00000487068 ABCC8Q09428 1581 aa18.06■□□□□ 0.48
NEK4-204ENST00000487068 RIMBP3CA6NJZ7 1639 aa17.98■□□□□ 0.47
NEK4-204ENST00000487068 RIMBP3BA6NNM3 1639 aa17.98■□□□□ 0.47
NEK4-204ENST00000487068 RIMBP3Q9UFD9 1639 aa17.98■□□□□ 0.47
NEK4-204ENST00000487068 IFT140Q96RY7 1462 aa17.95■□□□□ 0.46
NEK4-204ENST00000487068 CUX1P39880 1505 aa17.94■□□□□ 0.46
NEK4-204ENST00000487068 EIF4G3O43432 1585 aaKnown RBP17.92■□□□□ 0.46
NEK4-204ENST00000487068 POLA1P09884 1462 aaPredicted RBP17.92■□□□□ 0.46
NEK4-204ENST00000487068 TARBP1Q13395 1621 aaKnown RBP17.91■□□□□ 0.46
NEK4-204ENST00000487068 ZNF608Q9ULD9 1512 aaPredicted RBP17.91■□□□□ 0.46
NEK4-204ENST00000487068 FGD5Q6ZNL6 1462 aa17.9■□□□□ 0.46
NEK4-204ENST00000487068 ARHGEF11O15085 1522 aa17.89■□□□□ 0.45
NEK4-204ENST00000487068 BIVM-ERCC5R4GMW8 1640 aa17.87■□□□□ 0.45
NEK4-204ENST00000487068 WDR97A6NE52 1622 aa17.85■□□□□ 0.45
NEK4-204ENST00000487068 TOP2BQ02880 1626 aa17.83■□□□□ 0.44
NEK4-204ENST00000487068 SYNJ1O43426 1573 aa17.83■□□□□ 0.44
NEK4-204ENST00000487068 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
NEK4-204ENST00000487068 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
NEK4-204ENST00000487068 SOGA1O94964 1423 aa17.81■□□□□ 0.44
NEK4-204ENST00000487068 PBRM1Q86U86 1689 aa17.8■□□□□ 0.44
NEK4-204ENST00000487068 PHF23Q9BUL5 403 aaPredicted RBP17.79■□□□□ 0.44
NEK4-204ENST00000487068 CHD1O14646 1710 aa17.78■□□□□ 0.44
NEK4-204ENST00000487068 AQRO60306 1485 aaKnown RBP eCLIP17.75■□□□□ 0.43
NEK4-204ENST00000487068 CYB5RLQ6IPT4 315 aa17.74■□□□□ 0.43
NEK4-204ENST00000487068 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
NEK4-204ENST00000487068 ABCA5Q8WWZ7 1642 aa17.7■□□□□ 0.42
NEK4-204ENST00000487068 ARAP1Q96P48 1450 aa17.69■□□□□ 0.42
NEK4-204ENST00000487068 ABCA10Q8WWZ4 1543 aa17.68■□□□□ 0.42
NEK4-204ENST00000487068 TRHP20396 242 aaPredicted RBP17.66■□□□□ 0.42
NEK4-204ENST00000487068 SNAPC4Q5SXM2 1469 aa17.65■□□□□ 0.42
NEK4-204ENST00000487068 FBLN2P98095 1184 aa17.65■□□□□ 0.42
NEK4-204ENST00000487068 GAPVD1Q14C86 1478 aa17.64■□□□□ 0.41
NEK4-204ENST00000487068 GRIN2BQ13224 1484 aa17.63■□□□□ 0.41
NEK4-204ENST00000487068 MAGI1Q96QZ7 1491 aaPredicted RBP17.61■□□□□ 0.41
NEK4-204ENST00000487068 ADAMTS12P58397 1594 aa17.54■□□□□ 0.4
NEK4-204ENST00000487068 CLASP1Q7Z460 1538 aa17.53■□□□□ 0.4
NEK4-204ENST00000487068 SYNJ2O15056 1496 aa17.53■□□□□ 0.4
NEK4-204ENST00000487068 ERICH3Q5RHP9 1530 aa17.51■□□□□ 0.39
NEK4-204ENST00000487068 CHMP7Q8WUX9 453 aaPredicted RBP17.5■□□□□ 0.39
NEK4-204ENST00000487068 CUL7Q14999 1698 aa17.45■□□□□ 0.38
NEK4-204ENST00000487068 KIF27Q86VH2 1401 aa17.43■□□□□ 0.38
NEK4-204ENST00000487068 GRIN2AQ12879 1464 aa17.43■□□□□ 0.38
NEK4-204ENST00000487068 FHAD1B1AJZ9 1412 aa17.41■□□□□ 0.38
NEK4-204ENST00000487068 CEP170Q5SW79 1584 aa17.37■□□□□ 0.37
NEK4-204ENST00000487068 RUSC2Q8N2Y8 1516 aa17.3■□□□□ 0.36
NEK4-204ENST00000487068 NUP160Q12769 1436 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms