RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 NISCHQ9Y2I1 1504 aa30.17■■■□□ 2.42
HDAC6-229ENST00000486665 ABCC9O60706 1549 aa27.29■■□□□ 1.96
HDAC6-229ENST00000486665 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
HDAC6-229ENST00000486665 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
HDAC6-229ENST00000486665 DNAJC5BQ9UF47 199 aa25.77■■□□□ 1.72
HDAC6-229ENST00000486665 NACADO15069 1562 aa25.63■■□□□ 1.69
HDAC6-229ENST00000486665 DCAF8L2P0C7V8 631 aa25.47■■□□□ 1.67
HDAC6-229ENST00000486665 UNC13AQ9UPW8 1703 aa25.4■■□□□ 1.66
HDAC6-229ENST00000486665 PABPN1Q86U42 306 aaKnown RBP eCLIP25.38■■□□□ 1.651e-7■■■□□ 16.2
HDAC6-229ENST00000486665 BICRAQ9NZM4 1560 aa25.21■■□□□ 1.63
HDAC6-229ENST00000486665 MYO15BQ96JP2 1530 aa25.21■■□□□ 1.63
HDAC6-229ENST00000486665 ZCCHC6Q5VYS8 1495 aaKnown RBP25.15■■□□□ 1.62
HDAC6-229ENST00000486665 DCAF1Q9Y4B6 1507 aa24.87■■□□□ 1.57
HDAC6-229ENST00000486665 SCRIBQ14160 1630 aa24.76■■□□□ 1.55
HDAC6-229ENST00000486665 SHROOM4Q9ULL8 1493 aa24.69■■□□□ 1.54
HDAC6-229ENST00000486665 CC2D2AQ9P2K1 1620 aa24.64■■□□□ 1.54
HDAC6-229ENST00000486665 CECR2Q9BXF3 1484 aa24.56■■□□□ 1.52
HDAC6-229ENST00000486665 EIF4G1Q04637 1599 aaKnown RBP24.54■■□□□ 1.52
HDAC6-229ENST00000486665 NCAPD3P42695 1498 aa23.67■■□□□ 1.38
HDAC6-229ENST00000486665 DNAJC5Q9H3Z4 198 aa23.64■■□□□ 1.37
HDAC6-229ENST00000486665 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
HDAC6-229ENST00000486665 SMARCA4P51532 1647 aa23.59■■□□□ 1.37
HDAC6-229ENST00000486665 HMGXB3Q12766 1538 aa23.49■■□□□ 1.35
HDAC6-229ENST00000486665 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
HDAC6-229ENST00000486665 CUX2O14529 1486 aa23.49■■□□□ 1.35
HDAC6-229ENST00000486665 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
HDAC6-229ENST00000486665 NESP48681 1621 aa23.44■■□□□ 1.34
HDAC6-229ENST00000486665 BAZ1AQ9NRL2 1556 aaPredicted RBP23.39■■□□□ 1.33
HDAC6-229ENST00000486665 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
HDAC6-229ENST00000486665 PEG3Q9GZU2 1588 aa23.33■■□□□ 1.33
HDAC6-229ENST00000486665 MROH2BQ7Z745 1585 aa23.29■■□□□ 1.32
HDAC6-229ENST00000486665 THOC2Q8NI27 1593 aaKnown RBP23.22■■□□□ 1.31
HDAC6-229ENST00000486665 LAMC3Q9Y6N6 1575 aa23.16■■□□□ 1.3
HDAC6-229ENST00000486665 RSF1Q96T23 1441 aaPredicted RBP23.16■■□□□ 1.3
HDAC6-229ENST00000486665 KIF21AQ7Z4S6 1674 aa23.15■■□□□ 1.3
HDAC6-229ENST00000486665 WIZO95785 1651 aa23.03■■□□□ 1.28
HDAC6-229ENST00000486665 SUPT5HO00267 1087 aaKnown RBP22.99■■□□□ 1.27
HDAC6-229ENST00000486665 PDS5BQ9NTI5 1447 aa22.99■■□□□ 1.27
HDAC6-229ENST00000486665 CADPSQ9ULU8 1353 aa22.94■■□□□ 1.26
HDAC6-229ENST00000486665 MRC2Q9UBG0 1479 aa22.85■■□□□ 1.25
HDAC6-229ENST00000486665 WDR62O43379 1518 aa22.82■■□□□ 1.24
HDAC6-229ENST00000486665 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
HDAC6-229ENST00000486665 CEP164Q9UPV0 1460 aa22.72■■□□□ 1.23
HDAC6-229ENST00000486665 FANCD2Q9BXW9 1451 aa22.71■■□□□ 1.23
HDAC6-229ENST00000486665 CFTRP13569 1480 aa22.67■■□□□ 1.22
HDAC6-229ENST00000486665 URB2Q14146 1524 aaKnown RBP22.58■■□□□ 1.21
HDAC6-229ENST00000486665 TRIM41Q8WV44 630 aa22.58■■□□□ 1.21
HDAC6-229ENST00000486665 CCDC88BA6NC98 1476 aa22.54■■□□□ 1.2
HDAC6-229ENST00000486665 PRDM2Q13029 1718 aa22.48■■□□□ 1.19
HDAC6-229ENST00000486665 OSCARQ8IYS5 282 aa22.36■■□□□ 1.17
HDAC6-229ENST00000486665 ZNF608Q9ULD9 1512 aaPredicted RBP22.34■■□□□ 1.17
HDAC6-229ENST00000486665 TOPBP1Q92547 1522 aa22.28■■□□□ 1.16
HDAC6-229ENST00000486665 IFT140Q96RY7 1462 aa22.26■■□□□ 1.15
HDAC6-229ENST00000486665 RIMBP3CA6NJZ7 1639 aa22.21■■□□□ 1.15
HDAC6-229ENST00000486665 RIMBP3BA6NNM3 1639 aa22.21■■□□□ 1.15
HDAC6-229ENST00000486665 RIMBP3Q9UFD9 1639 aa22.21■■□□□ 1.15
HDAC6-229ENST00000486665 EIF4G3O43432 1585 aaKnown RBP22.19■■□□□ 1.14
HDAC6-229ENST00000486665 DNMBPQ6XZF7 1577 aa22.18■■□□□ 1.14
HDAC6-229ENST00000486665 TARBP1Q13395 1621 aaKnown RBP22.13■■□□□ 1.13
HDAC6-229ENST00000486665 ABCC8Q09428 1581 aa22.11■■□□□ 1.13
HDAC6-229ENST00000486665 ARHGEF11O15085 1522 aa22.1■■□□□ 1.13
HDAC6-229ENST00000486665 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.13
HDAC6-229ENST00000486665 CHD1O14646 1710 aa22.08■■□□□ 1.12
HDAC6-229ENST00000486665 POLA1P09884 1462 aaPredicted RBP22.05■■□□□ 1.12
HDAC6-229ENST00000486665 RAD54L2Q9Y4B4 1467 aa22.01■■□□□ 1.11
HDAC6-229ENST00000486665 TDRD9Q8NDG6 1382 aaKnown RBP21.91■■□□□ 1.1
HDAC6-229ENST00000486665 SOGA1O94964 1423 aa21.9■■□□□ 1.1
HDAC6-229ENST00000486665 FBLN2P98095 1184 aa21.9■■□□□ 1.1
HDAC6-229ENST00000486665 CYB5RLQ6IPT4 315 aa21.9■■□□□ 1.1
HDAC6-229ENST00000486665 FGD5Q6ZNL6 1462 aa21.9■■□□□ 1.1
HDAC6-229ENST00000486665 ARAP1Q96P48 1450 aa21.9■■□□□ 1.1
HDAC6-229ENST00000486665 CUX1P39880 1505 aa21.89■■□□□ 1.09
HDAC6-229ENST00000486665 SNAPC4Q5SXM2 1469 aa21.84■■□□□ 1.09
HDAC6-229ENST00000486665 WDR97A6NE52 1622 aa21.79■■□□□ 1.08
HDAC6-229ENST00000486665 CLASP1Q7Z460 1538 aa21.79■■□□□ 1.08
HDAC6-229ENST00000486665 WRNQ14191 1432 aaPredicted RBP eCLIP21.78■■□□□ 1.08
HDAC6-229ENST00000486665 CHIC1Q5VXU3 224 aa21.74■■□□□ 1.07
HDAC6-229ENST00000486665 GRIN2BQ13224 1484 aa21.72■■□□□ 1.07
HDAC6-229ENST00000486665 MAGI1Q96QZ7 1491 aaPredicted RBP21.72■■□□□ 1.07
HDAC6-229ENST00000486665 PBRM1Q86U86 1689 aa21.71■■□□□ 1.07
HDAC6-229ENST00000486665 SYNJ1O43426 1573 aa21.7■■□□□ 1.06
HDAC6-229ENST00000486665 CHMP7Q8WUX9 453 aaPredicted RBP21.69■■□□□ 1.06
HDAC6-229ENST00000486665 SYNJ2O15056 1496 aa21.67■■□□□ 1.06
HDAC6-229ENST00000486665 TRHP20396 242 aaPredicted RBP21.66■■□□□ 1.06
HDAC6-229ENST00000486665 TOP2BQ02880 1626 aa21.65■■□□□ 1.06
HDAC6-229ENST00000486665 GAPVD1Q14C86 1478 aa21.64■■□□□ 1.06
HDAC6-229ENST00000486665 ABCA5Q8WWZ7 1642 aa21.64■■□□□ 1.05
HDAC6-229ENST00000486665 BIVM-ERCC5R4GMW8 1640 aa21.62■■□□□ 1.05
HDAC6-229ENST00000486665 ABCA10Q8WWZ4 1543 aa21.61■■□□□ 1.05
HDAC6-229ENST00000486665 ERCC6L2Q5T890 1561 aa21.51■■□□□ 1.03
HDAC6-229ENST00000486665 ADAMTS12P58397 1594 aa21.48■■□□□ 1.03
HDAC6-229ENST00000486665 GRIN2AQ12879 1464 aa21.47■■□□□ 1.03
HDAC6-229ENST00000486665 CEP170Q5SW79 1584 aa21.45■■□□□ 1.02
HDAC6-229ENST00000486665 NUP160Q12769 1436 aa21.4■■□□□ 1.02
HDAC6-229ENST00000486665 SHROOM2Q13796 1616 aa21.37■■□□□ 1.01
HDAC6-229ENST00000486665 FHAD1B1AJZ9 1412 aa21.34■■□□□ 1.01
HDAC6-229ENST00000486665 RUSC2Q8N2Y8 1516 aa21.33■■□□□ 1
HDAC6-229ENST00000486665 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
HDAC6-229ENST00000486665 KIF27Q86VH2 1401 aa21.29■■□□□ 1
HDAC6-229ENST00000486665 FAM9AQ8IZU1 332 aaPredicted RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms