RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 NISCHQ9Y2I1 1504 aa23.33■■□□□ 1.33
TMEM39A-208ENST00000486159 AEBP2Q6ZN18 517 aaPredicted RBP21.64■■□□□ 1.05
TMEM39A-208ENST00000486159 CHIC1Q5VXU3 224 aa21.24■□□□□ 0.99
TMEM39A-208ENST00000486159 ABCC9O60706 1549 aa20.99■□□□□ 0.95
TMEM39A-208ENST00000486159 CCDC180Q9P1Z9 1646 aa20.84■□□□□ 0.93
TMEM39A-208ENST00000486159 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
TMEM39A-208ENST00000486159 RB1CC1Q8TDY2 1594 aa19.85■□□□□ 0.77
TMEM39A-208ENST00000486159 DCAF8L2P0C7V8 631 aa19.82■□□□□ 0.76
TMEM39A-208ENST00000486159 NACADO15069 1562 aa19.71■□□□□ 0.75
TMEM39A-208ENST00000486159 PABPN1Q86U42 306 aaKnown RBP eCLIP19.62■□□□□ 0.73
TMEM39A-208ENST00000486159 UNC13AQ9UPW8 1703 aa19.53■□□□□ 0.72
TMEM39A-208ENST00000486159 DNAJC5Q9H3Z4 198 aa19.39■□□□□ 0.69
TMEM39A-208ENST00000486159 MYO15BQ96JP2 1530 aa19.39■□□□□ 0.69
TMEM39A-208ENST00000486159 BICRAQ9NZM4 1560 aa19.39■□□□□ 0.69
TMEM39A-208ENST00000486159 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.68
TMEM39A-208ENST00000486159 DCAF1Q9Y4B6 1507 aa19.18■□□□□ 0.66
TMEM39A-208ENST00000486159 SCRIBQ14160 1630 aa19.14■□□□□ 0.65
TMEM39A-208ENST00000486159 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
TMEM39A-208ENST00000486159 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
TMEM39A-208ENST00000486159 EIF4G1Q04637 1599 aaKnown RBP18.86■□□□□ 0.61
TMEM39A-208ENST00000486159 CECR2Q9BXF3 1484 aa18.84■□□□□ 0.61
TMEM39A-208ENST00000486159 PHF23Q9BUL5 403 aaPredicted RBP18.65■□□□□ 0.58
TMEM39A-208ENST00000486159 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
TMEM39A-208ENST00000486159 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
TMEM39A-208ENST00000486159 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
TMEM39A-208ENST00000486159 SMARCA4P51532 1647 aa18.2■□□□□ 0.5
TMEM39A-208ENST00000486159 SMARCA2P51531 1590 aa18.08■□□□□ 0.49
TMEM39A-208ENST00000486159 NESP48681 1621 aa18.08■□□□□ 0.48
TMEM39A-208ENST00000486159 BAZ1AQ9NRL2 1556 aaPredicted RBP18.06■□□□□ 0.48
TMEM39A-208ENST00000486159 HMGXB3Q12766 1538 aa18.06■□□□□ 0.48
TMEM39A-208ENST00000486159 MROH2BQ7Z745 1585 aa18.05■□□□□ 0.48
TMEM39A-208ENST00000486159 ERCC6Q03468 1493 aa18.03■□□□□ 0.48
TMEM39A-208ENST00000486159 BAZ1BQ9UIG0 1483 aaKnown RBP18.02■□□□□ 0.48
TMEM39A-208ENST00000486159 TRIM41Q8WV44 630 aa18.02■□□□□ 0.48
TMEM39A-208ENST00000486159 PEG3Q9GZU2 1588 aa17.96■□□□□ 0.47
TMEM39A-208ENST00000486159 CUX2O14529 1486 aa17.95■□□□□ 0.46
TMEM39A-208ENST00000486159 WIZO95785 1651 aa17.85■□□□□ 0.45
TMEM39A-208ENST00000486159 THOC2Q8NI27 1593 aaKnown RBP17.8■□□□□ 0.44
TMEM39A-208ENST00000486159 LAMC3Q9Y6N6 1575 aa17.79■□□□□ 0.44
TMEM39A-208ENST00000486159 KIF21AQ7Z4S6 1674 aa17.79■□□□□ 0.44
TMEM39A-208ENST00000486159 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
TMEM39A-208ENST00000486159 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
TMEM39A-208ENST00000486159 RSF1Q96T23 1441 aaPredicted RBP17.65■□□□□ 0.42
TMEM39A-208ENST00000486159 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
TMEM39A-208ENST00000486159 WDR62O43379 1518 aa17.52■□□□□ 0.4
TMEM39A-208ENST00000486159 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.4
TMEM39A-208ENST00000486159 FANCD2Q9BXW9 1451 aa17.51■□□□□ 0.39
TMEM39A-208ENST00000486159 CFTRP13569 1480 aa17.5■□□□□ 0.39
TMEM39A-208ENST00000486159 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
TMEM39A-208ENST00000486159 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
TMEM39A-208ENST00000486159 CCDC88BA6NC98 1476 aa17.4■□□□□ 0.38
TMEM39A-208ENST00000486159 PLPPR3Q6T4P5 718 aa17.3■□□□□ 0.36
TMEM39A-208ENST00000486159 PRDM2Q13029 1718 aa17.29■□□□□ 0.36
TMEM39A-208ENST00000486159 ZNF608Q9ULD9 1512 aaPredicted RBP17.23■□□□□ 0.35
TMEM39A-208ENST00000486159 TOPBP1Q92547 1522 aa17.2■□□□□ 0.34
TMEM39A-208ENST00000486159 OSCARQ8IYS5 282 aa17.19■□□□□ 0.34
TMEM39A-208ENST00000486159 IFT140Q96RY7 1462 aa17.13■□□□□ 0.33
TMEM39A-208ENST00000486159 DNMBPQ6XZF7 1577 aa17.1■□□□□ 0.33
TMEM39A-208ENST00000486159 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.325e-7■■■■■ 45.1
TMEM39A-208ENST00000486159 EIF4G3O43432 1585 aaKnown RBP17.06■□□□□ 0.32
TMEM39A-208ENST00000486159 FOXD1Q16676 465 aa17.05■□□□□ 0.32
TMEM39A-208ENST00000486159 TARBP1Q13395 1621 aaKnown RBP17.04■□□□□ 0.32
TMEM39A-208ENST00000486159 ABCC8Q09428 1581 aa17.04■□□□□ 0.32
TMEM39A-208ENST00000486159 RAD54L2Q9Y4B4 1467 aa17.04■□□□□ 0.32
TMEM39A-208ENST00000486159 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
TMEM39A-208ENST00000486159 RIMBP3CA6NJZ7 1639 aa17■□□□□ 0.31
TMEM39A-208ENST00000486159 RIMBP3BA6NNM3 1639 aa17■□□□□ 0.31
TMEM39A-208ENST00000486159 RIMBP3Q9UFD9 1639 aa17■□□□□ 0.31
TMEM39A-208ENST00000486159 SUPT5HO00267 1087 aaKnown RBP16.97■□□□□ 0.31
TMEM39A-208ENST00000486159 CHD1O14646 1710 aa16.96■□□□□ 0.31
TMEM39A-208ENST00000486159 TDRD9Q8NDG6 1382 aaKnown RBP16.96■□□□□ 0.31
TMEM39A-208ENST00000486159 SOGA1O94964 1423 aa16.95■□□□□ 0.3
TMEM39A-208ENST00000486159 FBLN2P98095 1184 aa16.94■□□□□ 0.3
TMEM39A-208ENST00000486159 CUX1P39880 1505 aa16.94■□□□□ 0.3
TMEM39A-208ENST00000486159 FGD5Q6ZNL6 1462 aa16.93■□□□□ 0.3
TMEM39A-208ENST00000486159 ARHGEF11O15085 1522 aa16.93■□□□□ 0.3
TMEM39A-208ENST00000486159 ILDR1Q86SU0 546 aaPredicted RBP16.92■□□□□ 0.3
TMEM39A-208ENST00000486159 CYB5RLQ6IPT4 315 aa16.87■□□□□ 0.29
TMEM39A-208ENST00000486159 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
TMEM39A-208ENST00000486159 ARAP1Q96P48 1450 aa16.8■□□□□ 0.28
TMEM39A-208ENST00000486159 WDR97A6NE52 1622 aa16.78■□□□□ 0.28
TMEM39A-208ENST00000486159 CHMP7Q8WUX9 453 aaPredicted RBP16.77■□□□□ 0.28
TMEM39A-208ENST00000486159 TRHP20396 242 aaPredicted RBP16.76■□□□□ 0.27
TMEM39A-208ENST00000486159 GRIN2BQ13224 1484 aa16.75■□□□□ 0.27
TMEM39A-208ENST00000486159 CLASP1Q7Z460 1538 aa16.73■□□□□ 0.27
TMEM39A-208ENST00000486159 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
TMEM39A-208ENST00000486159 PBRM1Q86U86 1689 aa16.72■□□□□ 0.27
TMEM39A-208ENST00000486159 MAGI1Q96QZ7 1491 aaPredicted RBP16.72■□□□□ 0.27
TMEM39A-208ENST00000486159 SYNJ2O15056 1496 aa16.69■□□□□ 0.26
TMEM39A-208ENST00000486159 ABCA10Q8WWZ4 1543 aa16.69■□□□□ 0.26
TMEM39A-208ENST00000486159 ABCA5Q8WWZ7 1642 aa16.68■□□□□ 0.26
TMEM39A-208ENST00000486159 SYNJ1O43426 1573 aa16.67■□□□□ 0.26
TMEM39A-208ENST00000486159 WRNQ14191 1432 aaPredicted RBP eCLIP16.62■□□□□ 0.25
TMEM39A-208ENST00000486159 TOP2BQ02880 1626 aa16.61■□□□□ 0.25
TMEM39A-208ENST00000486159 BIVM-ERCC5R4GMW8 1640 aa16.61■□□□□ 0.25
TMEM39A-208ENST00000486159 ERCC6L2Q5T890 1561 aa16.59■□□□□ 0.25
TMEM39A-208ENST00000486159 ADAMTS12P58397 1594 aa16.55■□□□□ 0.24
TMEM39A-208ENST00000486159 GRIN2AQ12879 1464 aa16.55■□□□□ 0.24
TMEM39A-208ENST00000486159 CEP170Q5SW79 1584 aa16.54■□□□□ 0.24
TMEM39A-208ENST00000486159 NUP160Q12769 1436 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms