RNA–Protein interactions for RNA: ENST00000485502.1

CCL19-203, Transcript of C-C motif chemokine ligand 19, humanhuman

TSL 2

Gene CCL19, Length 481 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL19-203ENST00000485502 NISCHQ9Y2I1 1504 aa26.11■■□□□ 1.77
CCL19-203ENST00000485502 ABCC9O60706 1549 aa23.71■■□□□ 1.39
CCL19-203ENST00000485502 CCDC180Q9P1Z9 1646 aa23.64■■□□□ 1.38
CCL19-203ENST00000485502 RB1CC1Q8TDY2 1594 aa22.59■■□□□ 1.21
CCL19-203ENST00000485502 DNAJC5BQ9UF47 199 aa22.53■■□□□ 1.2
CCL19-203ENST00000485502 NACADO15069 1562 aa22.38■■□□□ 1.17
CCL19-203ENST00000485502 DCAF8L2P0C7V8 631 aa22.27■■□□□ 1.16
CCL19-203ENST00000485502 UNC13AQ9UPW8 1703 aa22.12■■□□□ 1.13
CCL19-203ENST00000485502 MYO15BQ96JP2 1530 aa22.05■■□□□ 1.12
CCL19-203ENST00000485502 BICRAQ9NZM4 1560 aa21.92■■□□□ 1.1
CCL19-203ENST00000485502 PABPN1Q86U42 306 aaKnown RBP eCLIP21.91■■□□□ 1.1
CCL19-203ENST00000485502 SHROOM4Q9ULL8 1493 aa21.77■■□□□ 1.07
CCL19-203ENST00000485502 ZCCHC6Q5VYS8 1495 aaKnown RBP21.64■■□□□ 1.05
CCL19-203ENST00000485502 DCAF1Q9Y4B6 1507 aa21.6■■□□□ 1.05
CCL19-203ENST00000485502 CC2D2AQ9P2K1 1620 aa21.52■■□□□ 1.04
CCL19-203ENST00000485502 CECR2Q9BXF3 1484 aa21.47■■□□□ 1.03
CCL19-203ENST00000485502 SCRIBQ14160 1630 aa21.42■■□□□ 1.02
CCL19-203ENST00000485502 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
CCL19-203ENST00000485502 DNAJC5Q9H3Z4 198 aa21.09■□□□□ 0.97
CCL19-203ENST00000485502 CUX2O14529 1486 aa20.77■□□□□ 0.92
CCL19-203ENST00000485502 NCAPD3P42695 1498 aa20.63■□□□□ 0.89
CCL19-203ENST00000485502 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
CCL19-203ENST00000485502 HMGXB3Q12766 1538 aa20.48■□□□□ 0.87
CCL19-203ENST00000485502 ATAD2BQ9ULI0 1458 aa20.45■□□□□ 0.86
CCL19-203ENST00000485502 SMARCA2P51531 1590 aa20.45■□□□□ 0.86
CCL19-203ENST00000485502 SMARCA4P51532 1647 aa20.38■□□□□ 0.85
CCL19-203ENST00000485502 THOC2Q8NI27 1593 aaKnown RBP20.29■□□□□ 0.84
CCL19-203ENST00000485502 PEG3Q9GZU2 1588 aa20.29■□□□□ 0.84
CCL19-203ENST00000485502 NESP48681 1621 aa20.27■□□□□ 0.83
CCL19-203ENST00000485502 LAMC3Q9Y6N6 1575 aa20.25■□□□□ 0.83
CCL19-203ENST00000485502 BAZ1AQ9NRL2 1556 aaPredicted RBP20.24■□□□□ 0.83
CCL19-203ENST00000485502 BAZ1BQ9UIG0 1483 aaKnown RBP20.22■□□□□ 0.83
CCL19-203ENST00000485502 MROH2BQ7Z745 1585 aa20.19■□□□□ 0.82
CCL19-203ENST00000485502 KIF21AQ7Z4S6 1674 aa20.12■□□□□ 0.81
CCL19-203ENST00000485502 PDS5BQ9NTI5 1447 aa20.08■□□□□ 0.8
CCL19-203ENST00000485502 WIZO95785 1651 aa20■□□□□ 0.79
CCL19-203ENST00000485502 WDR62O43379 1518 aa19.93■□□□□ 0.78
CCL19-203ENST00000485502 CADPSQ9ULU8 1353 aa19.92■□□□□ 0.78
CCL19-203ENST00000485502 MRC2Q9UBG0 1479 aa19.92■□□□□ 0.78
CCL19-203ENST00000485502 TRIM41Q8WV44 630 aa19.8■□□□□ 0.76
CCL19-203ENST00000485502 RSF1Q96T23 1441 aaPredicted RBP19.79■□□□□ 0.76
CCL19-203ENST00000485502 CEP164Q9UPV0 1460 aa19.75■□□□□ 0.75
CCL19-203ENST00000485502 FANCD2Q9BXW9 1451 aa19.67■□□□□ 0.74
CCL19-203ENST00000485502 CFTRP13569 1480 aa19.66■□□□□ 0.74
CCL19-203ENST00000485502 TOP2AP11388 1531 aaKnown RBP19.64■□□□□ 0.73
CCL19-203ENST00000485502 OSCARQ8IYS5 282 aa19.63■□□□□ 0.73
CCL19-203ENST00000485502 PRDM2Q13029 1718 aa19.58■□□□□ 0.72
CCL19-203ENST00000485502 URB2Q14146 1524 aaKnown RBP19.53■□□□□ 0.72
CCL19-203ENST00000485502 CCDC88BA6NC98 1476 aa19.49■□□□□ 0.71
CCL19-203ENST00000485502 RIMBP3CA6NJZ7 1639 aa19.47■□□□□ 0.71
CCL19-203ENST00000485502 RIMBP3BA6NNM3 1639 aa19.47■□□□□ 0.71
CCL19-203ENST00000485502 RIMBP3Q9UFD9 1639 aa19.47■□□□□ 0.71
CCL19-203ENST00000485502 IFT140Q96RY7 1462 aa19.4■□□□□ 0.7
CCL19-203ENST00000485502 ARHGEF11O15085 1522 aa19.37■□□□□ 0.69
CCL19-203ENST00000485502 ABCC8Q09428 1581 aa19.32■□□□□ 0.68
CCL19-203ENST00000485502 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
CCL19-203ENST00000485502 TOPBP1Q92547 1522 aa19.28■□□□□ 0.68
CCL19-203ENST00000485502 EIF4G3O43432 1585 aaKnown RBP19.27■□□□□ 0.68
CCL19-203ENST00000485502 SUPT5HO00267 1087 aaKnown RBP19.27■□□□□ 0.68
CCL19-203ENST00000485502 DNMBPQ6XZF7 1577 aa19.22■□□□□ 0.67
CCL19-203ENST00000485502 CHD1O14646 1710 aa19.22■□□□□ 0.67
CCL19-203ENST00000485502 TARBP1Q13395 1621 aaKnown RBP19.19■□□□□ 0.66
CCL19-203ENST00000485502 ARAP1Q96P48 1450 aa19.13■□□□□ 0.65
CCL19-203ENST00000485502 WDR97A6NE52 1622 aa19.11■□□□□ 0.65
CCL19-203ENST00000485502 CYB5RLQ6IPT4 315 aa19.1■□□□□ 0.65
CCL19-203ENST00000485502 AQRO60306 1485 aaKnown RBP eCLIP19.06■□□□□ 0.64
CCL19-203ENST00000485502 POLA1P09884 1462 aaPredicted RBP19.05■□□□□ 0.64
CCL19-203ENST00000485502 RAD54L2Q9Y4B4 1467 aa19.03■□□□□ 0.64
CCL19-203ENST00000485502 CLASP1Q7Z460 1538 aa19■□□□□ 0.63
CCL19-203ENST00000485502 FBLN2P98095 1184 aa19■□□□□ 0.63
CCL19-203ENST00000485502 TDRD9Q8NDG6 1382 aaKnown RBP18.97■□□□□ 0.63
CCL19-203ENST00000485502 TRHP20396 242 aaPredicted RBP18.97■□□□□ 0.63
CCL19-203ENST00000485502 SOGA1O94964 1423 aa18.97■□□□□ 0.63
CCL19-203ENST00000485502 CUX1P39880 1505 aa18.95■□□□□ 0.62
CCL19-203ENST00000485502 FGD5Q6ZNL6 1462 aa18.95■□□□□ 0.62
CCL19-203ENST00000485502 SYNJ1O43426 1573 aa18.94■□□□□ 0.62
CCL19-203ENST00000485502 MAGI1Q96QZ7 1491 aaPredicted RBP18.94■□□□□ 0.62
CCL19-203ENST00000485502 SNAPC4Q5SXM2 1469 aa18.9■□□□□ 0.62
CCL19-203ENST00000485502 SYNJ2O15056 1496 aa18.85■□□□□ 0.61
CCL19-203ENST00000485502 GRIN2BQ13224 1484 aa18.85■□□□□ 0.61
CCL19-203ENST00000485502 PBRM1Q86U86 1689 aa18.8■□□□□ 0.6
CCL19-203ENST00000485502 CHMP7Q8WUX9 453 aaPredicted RBP18.8■□□□□ 0.6
CCL19-203ENST00000485502 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
CCL19-203ENST00000485502 AEBP2Q6ZN18 517 aaPredicted RBP18.73■□□□□ 0.59
CCL19-203ENST00000485502 ABCA5Q8WWZ7 1642 aa18.72■□□□□ 0.59
CCL19-203ENST00000485502 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
CCL19-203ENST00000485502 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
CCL19-203ENST00000485502 TOP2BQ02880 1626 aa18.63■□□□□ 0.57
CCL19-203ENST00000485502 BIVM-ERCC5R4GMW8 1640 aa18.62■□□□□ 0.57
CCL19-203ENST00000485502 SHROOM2Q13796 1616 aa18.61■□□□□ 0.57
CCL19-203ENST00000485502 GRIN2AQ12879 1464 aa18.6■□□□□ 0.57
CCL19-203ENST00000485502 NUP160Q12769 1436 aa18.59■□□□□ 0.57
CCL19-203ENST00000485502 CEP170Q5SW79 1584 aa18.58■□□□□ 0.56
CCL19-203ENST00000485502 ADAMTS12P58397 1594 aa18.57■□□□□ 0.56
CCL19-203ENST00000485502 KIF13AQ9H1H9 1805 aa18.57■□□□□ 0.56
CCL19-203ENST00000485502 ERCC6L2Q5T890 1561 aa18.55■□□□□ 0.56
CCL19-203ENST00000485502 CHIC1Q5VXU3 224 aa18.51■□□□□ 0.55
CCL19-203ENST00000485502 ERICH3Q5RHP9 1530 aa18.48■□□□□ 0.55
CCL19-203ENST00000485502 FHAD1B1AJZ9 1412 aa18.48■□□□□ 0.55
CCL19-203ENST00000485502 MAPKBP1O60336 1514 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms