RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 NISCHQ9Y2I1 1504 aa40.67■■■■■ 4.1
TRIM54-203ENST00000485306 CCDC180Q9P1Z9 1646 aa36.33■■■■□ 3.41
TRIM54-203ENST00000485306 ABCC9O60706 1549 aa35.93■■■■□ 3.34
TRIM54-203ENST00000485306 RB1CC1Q8TDY2 1594 aa34.42■■■■□ 3.1
TRIM54-203ENST00000485306 NACADO15069 1562 aa34.28■■■■□ 3.08
TRIM54-203ENST00000485306 DCAF8L2P0C7V8 631 aa34.27■■■■□ 3.08
TRIM54-203ENST00000485306 MYO15BQ96JP2 1530 aa33.92■■■■□ 3.02
TRIM54-203ENST00000485306 ZCCHC6Q5VYS8 1495 aaKnown RBP33.76■■■□□ 2.99
TRIM54-203ENST00000485306 DCAF1Q9Y4B6 1507 aa33.63■■■□□ 2.97
TRIM54-203ENST00000485306 UNC13AQ9UPW8 1703 aa33.58■■■□□ 2.97
TRIM54-203ENST00000485306 PABPN1Q86U42 306 aaKnown RBP eCLIP33.54■■■□□ 2.96
TRIM54-203ENST00000485306 DNAJC5BQ9UF47 199 aa33.33■■■□□ 2.93
TRIM54-203ENST00000485306 BICRAQ9NZM4 1560 aa33.31■■■□□ 2.92
TRIM54-203ENST00000485306 SCRIBQ14160 1630 aa33.1■■■□□ 2.89
TRIM54-203ENST00000485306 SHROOM4Q9ULL8 1493 aa32.99■■■□□ 2.87
TRIM54-203ENST00000485306 EIF4G1Q04637 1599 aaKnown RBP32.5■■■□□ 2.79
TRIM54-203ENST00000485306 CC2D2AQ9P2K1 1620 aa32.48■■■□□ 2.79
TRIM54-203ENST00000485306 CECR2Q9BXF3 1484 aa32.35■■■□□ 2.77
TRIM54-203ENST00000485306 NCAPD3P42695 1498 aa31.63■■■□□ 2.65
TRIM54-203ENST00000485306 SMARCA4P51532 1647 aa31.62■■■□□ 2.65
TRIM54-203ENST00000485306 BAZ1AQ9NRL2 1556 aaPredicted RBP31.56■■■□□ 2.64
TRIM54-203ENST00000485306 ATAD2BQ9ULI0 1458 aa31.56■■■□□ 2.64
TRIM54-203ENST00000485306 SMARCA2P51531 1590 aa31.54■■■□□ 2.64
TRIM54-203ENST00000485306 HMGXB3Q12766 1538 aa31.4■■■□□ 2.62
TRIM54-203ENST00000485306 PEG3Q9GZU2 1588 aa31.31■■■□□ 2.6
TRIM54-203ENST00000485306 BAZ1BQ9UIG0 1483 aaKnown RBP31.31■■■□□ 2.6
TRIM54-203ENST00000485306 MROH2BQ7Z745 1585 aa31.3■■■□□ 2.6
TRIM54-203ENST00000485306 ERCC6Q03468 1493 aa31.05■■■□□ 2.56
TRIM54-203ENST00000485306 WIZO95785 1651 aa30.97■■■□□ 2.55
TRIM54-203ENST00000485306 NESP48681 1621 aa30.95■■■□□ 2.55
TRIM54-203ENST00000485306 LAMC3Q9Y6N6 1575 aa30.86■■■□□ 2.53
TRIM54-203ENST00000485306 CUX2O14529 1486 aa30.83■■■□□ 2.53
TRIM54-203ENST00000485306 RSF1Q96T23 1441 aaPredicted RBP30.82■■■□□ 2.52
TRIM54-203ENST00000485306 PDS5BQ9NTI5 1447 aa30.71■■■□□ 2.51
TRIM54-203ENST00000485306 CADPSQ9ULU8 1353 aa30.7■■■□□ 2.51
TRIM54-203ENST00000485306 TOP2AP11388 1531 aaKnown RBP30.62■■■□□ 2.49
TRIM54-203ENST00000485306 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
TRIM54-203ENST00000485306 THOC2Q8NI27 1593 aaKnown RBP30.54■■■□□ 2.48
TRIM54-203ENST00000485306 CFTRP13569 1480 aa30.41■■■□□ 2.46
TRIM54-203ENST00000485306 DNAJC5Q9H3Z4 198 aa30.4■■■□□ 2.46
TRIM54-203ENST00000485306 MRC2Q9UBG0 1479 aa30.36■■■□□ 2.45
TRIM54-203ENST00000485306 FANCD2Q9BXW9 1451 aa30.33■■■□□ 2.45
TRIM54-203ENST00000485306 CEP164Q9UPV0 1460 aa30.33■■■□□ 2.45
TRIM54-203ENST00000485306 CCDC88BA6NC98 1476 aa30.27■■■□□ 2.44
TRIM54-203ENST00000485306 WDR62O43379 1518 aa30.25■■■□□ 2.43
TRIM54-203ENST00000485306 PRDM2Q13029 1718 aa30.14■■■□□ 2.42
TRIM54-203ENST00000485306 URB2Q14146 1524 aaKnown RBP30.01■■■□□ 2.4
TRIM54-203ENST00000485306 SUPT5HO00267 1087 aaKnown RBP29.84■■■□□ 2.37
TRIM54-203ENST00000485306 ABCC8Q09428 1581 aa29.83■■■□□ 2.37
TRIM54-203ENST00000485306 TOPBP1Q92547 1522 aa29.79■■■□□ 2.36
TRIM54-203ENST00000485306 IFT140Q96RY7 1462 aa29.73■■■□□ 2.35
TRIM54-203ENST00000485306 DNMBPQ6XZF7 1577 aa29.72■■■□□ 2.35
TRIM54-203ENST00000485306 OSCARQ8IYS5 282 aa29.58■■■□□ 2.33
TRIM54-203ENST00000485306 ZNF608Q9ULD9 1512 aaPredicted RBP29.58■■■□□ 2.33
TRIM54-203ENST00000485306 POLA1P09884 1462 aaPredicted RBP29.5■■■□□ 2.31
TRIM54-203ENST00000485306 TARBP1Q13395 1621 aaKnown RBP29.47■■■□□ 2.31
TRIM54-203ENST00000485306 EIF4G3O43432 1585 aaKnown RBP29.44■■■□□ 2.3
TRIM54-203ENST00000485306 SOGA1O94964 1423 aa29.44■■■□□ 2.3
TRIM54-203ENST00000485306 AEBP2Q6ZN18 517 aaPredicted RBP29.4■■■□□ 2.3
TRIM54-203ENST00000485306 AQRO60306 1485 aaKnown RBP eCLIP29.4■■■□□ 2.3
TRIM54-203ENST00000485306 CUX1P39880 1505 aa29.39■■■□□ 2.3
TRIM54-203ENST00000485306 FGD5Q6ZNL6 1462 aa29.38■■■□□ 2.29
TRIM54-203ENST00000485306 RAD54L2Q9Y4B4 1467 aa29.38■■■□□ 2.29
TRIM54-203ENST00000485306 TDRD9Q8NDG6 1382 aaKnown RBP29.29■■■□□ 2.28
TRIM54-203ENST00000485306 WDR97A6NE52 1622 aa29.26■■■□□ 2.27
TRIM54-203ENST00000485306 TRIM41Q8WV44 630 aa29.24■■■□□ 2.27
TRIM54-203ENST00000485306 FBLN2P98095 1184 aa29.22■■■□□ 2.27
TRIM54-203ENST00000485306 CHD1O14646 1710 aa29.17■■■□□ 2.26
TRIM54-203ENST00000485306 GRIN2BQ13224 1484 aa29.11■■■□□ 2.25
TRIM54-203ENST00000485306 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.25
TRIM54-203ENST00000485306 SNAPC4Q5SXM2 1469 aa29.1■■■□□ 2.25
TRIM54-203ENST00000485306 ABCA10Q8WWZ4 1543 aa29.08■■■□□ 2.25
TRIM54-203ENST00000485306 CHMP7Q8WUX9 453 aaPredicted RBP29.07■■■□□ 2.24
TRIM54-203ENST00000485306 MAGI1Q96QZ7 1491 aaPredicted RBP29.07■■■□□ 2.24
TRIM54-203ENST00000485306 TOP2BQ02880 1626 aa29.06■■■□□ 2.24
TRIM54-203ENST00000485306 GAPVD1Q14C86 1478 aa29.06■■■□□ 2.24
TRIM54-203ENST00000485306 BIVM-ERCC5R4GMW8 1640 aa29.05■■■□□ 2.24
TRIM54-203ENST00000485306 RIMBP3CA6NJZ7 1639 aa29.04■■■□□ 2.24
TRIM54-203ENST00000485306 RIMBP3BA6NNM3 1639 aa29.04■■■□□ 2.24
TRIM54-203ENST00000485306 RIMBP3Q9UFD9 1639 aa29.04■■■□□ 2.24
TRIM54-203ENST00000485306 SYNJ1O43426 1573 aa29■■■□□ 2.23
TRIM54-203ENST00000485306 PBRM1Q86U86 1689 aa28.99■■■□□ 2.23
TRIM54-203ENST00000485306 ARHGEF11O15085 1522 aa28.99■■■□□ 2.23
TRIM54-203ENST00000485306 ABCA5Q8WWZ7 1642 aa28.97■■■□□ 2.23
TRIM54-203ENST00000485306 SYNJ2O15056 1496 aa28.97■■■□□ 2.23
TRIM54-203ENST00000485306 CYB5RLQ6IPT4 315 aa28.83■■■□□ 2.21
TRIM54-203ENST00000485306 CLASP1Q7Z460 1538 aa28.82■■■□□ 2.2
TRIM54-203ENST00000485306 CHIC1Q5VXU3 224 aa28.81■■■□□ 2.2
TRIM54-203ENST00000485306 ERICH3Q5RHP9 1530 aa28.74■■■□□ 2.19
TRIM54-203ENST00000485306 FHAD1B1AJZ9 1412 aa28.72■■■□□ 2.19
TRIM54-203ENST00000485306 GRIN2AQ12879 1464 aa28.72■■■□□ 2.19
TRIM54-203ENST00000485306 ADAMTS12P58397 1594 aa28.71■■■□□ 2.19
TRIM54-203ENST00000485306 ARAP1Q96P48 1450 aa28.71■■■□□ 2.19
TRIM54-203ENST00000485306 NUP160Q12769 1436 aa28.59■■■□□ 2.17
TRIM54-203ENST00000485306 CEP170Q5SW79 1584 aa28.56■■■□□ 2.16
TRIM54-203ENST00000485306 KIF27Q86VH2 1401 aa28.56■■■□□ 2.16
TRIM54-203ENST00000485306 IGF1RP08069 1367 aa28.47■■■□□ 2.15
TRIM54-203ENST00000485306 TRHP20396 242 aaPredicted RBP28.42■■■□□ 2.14
TRIM54-203ENST00000485306 SHROOM2Q13796 1616 aa28.41■■■□□ 2.14
TRIM54-203ENST00000485306 CUL7Q14999 1698 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms