RNA–Protein interactions for RNA: ENST00000484763.1

VCPKMT-203, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best)

Gene VCPKMT, Length 1,849 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-203ENST00000484763 NISCHQ9Y2I1 1504 aa47.56■■■■■ 5.2
VCPKMT-203ENST00000484763 CCDC180Q9P1Z9 1646 aa41.83■■■■■ 4.29
VCPKMT-203ENST00000484763 ZCCHC6Q5VYS8 1495 aaKnown RBP39.88■■■■□ 3.97
VCPKMT-203ENST00000484763 ABCC9O60706 1549 aa39.84■■■■□ 3.97
VCPKMT-203ENST00000484763 DCAF1Q9Y4B6 1507 aa39.4■■■■□ 3.9
VCPKMT-203ENST00000484763 DCAF8L2P0C7V8 631 aa39.28■■■■□ 3.88
VCPKMT-203ENST00000484763 MYO15BQ96JP2 1530 aa39.13■■■■□ 3.86
VCPKMT-203ENST00000484763 NACADO15069 1562 aa39.02■■■■□ 3.84
VCPKMT-203ENST00000484763 RB1CC1Q8TDY2 1594 aa38.81■■■■□ 3.8
VCPKMT-203ENST00000484763 SHROOM4Q9ULL8 1493 aa38.3■■■■□ 3.72
VCPKMT-203ENST00000484763 SCRIBQ14160 1630 aa38.28■■■■□ 3.72
VCPKMT-203ENST00000484763 UNC13AQ9UPW8 1703 aa38.01■■■■□ 3.68
VCPKMT-203ENST00000484763 BICRAQ9NZM4 1560 aa37.6■■■■□ 3.61
VCPKMT-203ENST00000484763 PABPN1Q86U42 306 aaKnown RBP eCLIP37.38■■■■□ 3.58
VCPKMT-203ENST00000484763 CECR2Q9BXF3 1484 aa36.93■■■■□ 3.5
VCPKMT-203ENST00000484763 BAZ1AQ9NRL2 1556 aaPredicted RBP36.81■■■■□ 3.48
VCPKMT-203ENST00000484763 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
VCPKMT-203ENST00000484763 MROH2BQ7Z745 1585 aa36.69■■■■□ 3.46
VCPKMT-203ENST00000484763 RSF1Q96T23 1441 aaPredicted RBP36.66■■■■□ 3.46
VCPKMT-203ENST00000484763 SUPT5HO00267 1087 aaKnown RBP36.58■■■■□ 3.45
VCPKMT-203ENST00000484763 EIF4G1Q04637 1599 aaKnown RBP36.53■■■■□ 3.44
VCPKMT-203ENST00000484763 WIZO95785 1651 aa36.39■■■■□ 3.42
VCPKMT-203ENST00000484763 PEG3Q9GZU2 1588 aa36.3■■■■□ 3.4
VCPKMT-203ENST00000484763 SMARCA2P51531 1590 aa36.21■■■■□ 3.39
VCPKMT-203ENST00000484763 ATAD2BQ9ULI0 1458 aa36.18■■■■□ 3.38
VCPKMT-203ENST00000484763 CC2D2AQ9P2K1 1620 aa36.1■■■■□ 3.37
VCPKMT-203ENST00000484763 TOP2AP11388 1531 aaKnown RBP36.04■■■■□ 3.36
VCPKMT-203ENST00000484763 NCAPD3P42695 1498 aa35.97■■■■□ 3.35
VCPKMT-203ENST00000484763 BAZ1BQ9UIG0 1483 aaKnown RBP35.97■■■■□ 3.35
VCPKMT-203ENST00000484763 HMGXB3Q12766 1538 aa35.95■■■■□ 3.34
VCPKMT-203ENST00000484763 CCDC88BA6NC98 1476 aa35.59■■■■□ 3.29
VCPKMT-203ENST00000484763 DNAJC5BQ9UF47 199 aa35.48■■■■□ 3.27
VCPKMT-203ENST00000484763 CFTRP13569 1480 aa35.03■■■■□ 3.2
VCPKMT-203ENST00000484763 CADPSQ9ULU8 1353 aa34.99■■■■□ 3.19
VCPKMT-203ENST00000484763 PRDM2Q13029 1718 aa34.95■■■■□ 3.19
VCPKMT-203ENST00000484763 LAMC3Q9Y6N6 1575 aa34.88■■■■□ 3.17
VCPKMT-203ENST00000484763 NESP48681 1621 aa34.81■■■■□ 3.16
VCPKMT-203ENST00000484763 CHIC1Q5VXU3 224 aa34.78■■■■□ 3.16
VCPKMT-203ENST00000484763 ABCC8Q09428 1581 aa34.68■■■■□ 3.14
VCPKMT-203ENST00000484763 FANCD2Q9BXW9 1451 aa34.62■■■■□ 3.13
VCPKMT-203ENST00000484763 PDS5BQ9NTI5 1447 aa34.59■■■■□ 3.13
VCPKMT-203ENST00000484763 WRNQ14191 1432 aaPredicted RBP eCLIP34.54■■■■□ 3.12
VCPKMT-203ENST00000484763 TRIM41Q8WV44 630 aa34.48■■■■□ 3.11
VCPKMT-203ENST00000484763 CEP164Q9UPV0 1460 aa34.48■■■■□ 3.11
VCPKMT-203ENST00000484763 KIF21AQ7Z4S6 1674 aa34.48■■■■□ 3.11
VCPKMT-203ENST00000484763 SYNJ1O43426 1573 aa34.44■■■■□ 3.1
VCPKMT-203ENST00000484763 TOP2BQ02880 1626 aa34.37■■■■□ 3.09
VCPKMT-203ENST00000484763 BIVM-ERCC5R4GMW8 1640 aa34.37■■■■□ 3.09
VCPKMT-203ENST00000484763 CUX1P39880 1505 aa34.36■■■■□ 3.09
VCPKMT-203ENST00000484763 DNMBPQ6XZF7 1577 aa34.26■■■■□ 3.08
VCPKMT-203ENST00000484763 ERCC6Q03468 1493 aa34.25■■■■□ 3.07
VCPKMT-203ENST00000484763 URB2Q14146 1524 aaKnown RBP34.2■■■■□ 3.07
VCPKMT-203ENST00000484763 TOPBP1Q92547 1522 aa34.19■■■■□ 3.06
VCPKMT-203ENST00000484763 MRC2Q9UBG0 1479 aa34.18■■■■□ 3.06
VCPKMT-203ENST00000484763 FGD5Q6ZNL6 1462 aa34.07■■■■□ 3.04
VCPKMT-203ENST00000484763 THOC2Q8NI27 1593 aaKnown RBP34.06■■■■□ 3.04
VCPKMT-203ENST00000484763 WDR62O43379 1518 aa34.05■■■■□ 3.04
VCPKMT-203ENST00000484763 POLA1P09884 1462 aaPredicted RBP33.98■■■■□ 3.03
VCPKMT-203ENST00000484763 SOGA1O94964 1423 aa33.89■■■■□ 3.02
VCPKMT-203ENST00000484763 EEA1Q15075 1411 aa33.83■■■■□ 3.01
VCPKMT-203ENST00000484763 RAD54L2Q9Y4B4 1467 aa33.81■■■■□ 3
VCPKMT-203ENST00000484763 RUSC2Q8N2Y8 1516 aa33.78■■■■□ 3
VCPKMT-203ENST00000484763 ABCA10Q8WWZ4 1543 aa33.78■■■■□ 3
VCPKMT-203ENST00000484763 WDR97A6NE52 1622 aa33.77■■■■□ 3
VCPKMT-203ENST00000484763 FAM9AQ8IZU1 332 aaPredicted RBP33.76■■■■□ 3
VCPKMT-203ENST00000484763 CUX2O14529 1486 aa33.75■■■□□ 2.99
VCPKMT-203ENST00000484763 TARBP1Q13395 1621 aaKnown RBP33.74■■■□□ 2.99
VCPKMT-203ENST00000484763 KIF27Q86VH2 1401 aa33.72■■■□□ 2.99
VCPKMT-203ENST00000484763 IFT140Q96RY7 1462 aa33.68■■■□□ 2.98
VCPKMT-203ENST00000484763 CSRNP3Q8WYN3 585 aa33.58■■■□□ 2.97
VCPKMT-203ENST00000484763 ABCA5Q8WWZ7 1642 aa33.57■■■□□ 2.97
VCPKMT-203ENST00000484763 TDRD9Q8NDG6 1382 aaKnown RBP33.51■■■□□ 2.96
VCPKMT-203ENST00000484763 GAPVD1Q14C86 1478 aa33.49■■■□□ 2.95
VCPKMT-203ENST00000484763 ZNF608Q9ULD9 1512 aaPredicted RBP33.45■■■□□ 2.95
VCPKMT-203ENST00000484763 KIF21BO75037 1637 aa33.43■■■□□ 2.94
VCPKMT-203ENST00000484763 IGF1RP08069 1367 aa33.42■■■□□ 2.94
VCPKMT-203ENST00000484763 EIF4G3O43432 1585 aaKnown RBP33.41■■■□□ 2.94
VCPKMT-203ENST00000484763 PBRM1Q86U86 1689 aa33.41■■■□□ 2.94
VCPKMT-203ENST00000484763 ERICH3Q5RHP9 1530 aa33.4■■■□□ 2.94
VCPKMT-203ENST00000484763 AQRO60306 1485 aaKnown RBP eCLIP33.4■■■□□ 2.941e-6■■■■□ 26.1
VCPKMT-203ENST00000484763 LOC105371045A0A1W2PR82 267 aa33.36■■■□□ 2.93
VCPKMT-203ENST00000484763 PRXQ9BXM0 1461 aa33.36■■■□□ 2.93
VCPKMT-203ENST00000484763 CUL7Q14999 1698 aa33.35■■■□□ 2.93
VCPKMT-203ENST00000484763 GOLGA3Q08378 1498 aa33.32■■■□□ 2.92
VCPKMT-203ENST00000484763 GRIN2BQ13224 1484 aa33.31■■■□□ 2.92
VCPKMT-203ENST00000484763 CARMIL1Q5VZK9 1371 aa33.27■■■□□ 2.92
VCPKMT-203ENST00000484763 EHMT2Q96KQ7 1210 aa33.26■■■□□ 2.92
VCPKMT-203ENST00000484763 RAPGEF2Q9Y4G8 1499 aa33.25■■■□□ 2.91
VCPKMT-203ENST00000484763 ADAMTS12P58397 1594 aa33.18■■■□□ 2.9
VCPKMT-203ENST00000484763 SNAPC4Q5SXM2 1469 aa33.14■■■□□ 2.9
VCPKMT-203ENST00000484763 MAGI1Q96QZ7 1491 aaPredicted RBP33.12■■■□□ 2.89
VCPKMT-203ENST00000484763 FHAD1B1AJZ9 1412 aa33.12■■■□□ 2.89
VCPKMT-203ENST00000484763 UBTFP17480 764 aaKnown RBP33.09■■■□□ 2.89
VCPKMT-203ENST00000484763 TNIKQ9UKE5 1360 aa33.07■■■□□ 2.88
VCPKMT-203ENST00000484763 SYNJ2O15056 1496 aa32.97■■■□□ 2.87
VCPKMT-203ENST00000484763 CTTNBP2Q8WZ74 1663 aa32.91■■■□□ 2.86
VCPKMT-203ENST00000484763 GRIN2AQ12879 1464 aa32.91■■■□□ 2.86
VCPKMT-203ENST00000484763 CEP162Q5TB80 1403 aa32.86■■■□□ 2.85
VCPKMT-203ENST00000484763 CHMP7Q8WUX9 453 aaPredicted RBP32.84■■■□□ 2.85
VCPKMT-203ENST00000484763 CHD1O14646 1710 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms