RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 NISCHQ9Y2I1 1504 aa24.82■■□□□ 1.56
CPSF4-213ENST00000484112 ABCC9O60706 1549 aa22.64■■□□□ 1.21
CPSF4-213ENST00000484112 CCDC180Q9P1Z9 1646 aa22.28■■□□□ 1.16
CPSF4-213ENST00000484112 DNAJC5BQ9UF47 199 aa21.44■■□□□ 1.02
CPSF4-213ENST00000484112 RB1CC1Q8TDY2 1594 aa21.38■■□□□ 1.01
CPSF4-213ENST00000484112 DCAF8L2P0C7V8 631 aa21.26■□□□□ 0.99
CPSF4-213ENST00000484112 NACADO15069 1562 aa21.17■□□□□ 0.98
CPSF4-213ENST00000484112 PABPN1Q86U42 306 aaKnown RBP eCLIP21.12■□□□□ 0.97
CPSF4-213ENST00000484112 UNC13AQ9UPW8 1703 aa20.84■□□□□ 0.93
CPSF4-213ENST00000484112 MYO15BQ96JP2 1530 aa20.75■□□□□ 0.91
CPSF4-213ENST00000484112 BICRAQ9NZM4 1560 aa20.74■□□□□ 0.91
CPSF4-213ENST00000484112 ZCCHC6Q5VYS8 1495 aaKnown RBP20.5■□□□□ 0.87
CPSF4-213ENST00000484112 DCAF1Q9Y4B6 1507 aa20.43■□□□□ 0.86
CPSF4-213ENST00000484112 SCRIBQ14160 1630 aa20.4■□□□□ 0.86
CPSF4-213ENST00000484112 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
CPSF4-213ENST00000484112 SHROOM4Q9ULL8 1493 aa20.38■□□□□ 0.85
CPSF4-213ENST00000484112 CC2D2AQ9P2K1 1620 aa20.38■□□□□ 0.85
CPSF4-213ENST00000484112 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
CPSF4-213ENST00000484112 DNAJC5Q9H3Z4 198 aa19.82■□□□□ 0.76
CPSF4-213ENST00000484112 NCAPD3P42695 1498 aa19.56■□□□□ 0.72
CPSF4-213ENST00000484112 ERCC6Q03468 1493 aa19.56■□□□□ 0.72
CPSF4-213ENST00000484112 CUX2O14529 1486 aa19.52■□□□□ 0.72
CPSF4-213ENST00000484112 ATAD2BQ9ULI0 1458 aa19.49■□□□□ 0.71
CPSF4-213ENST00000484112 SMARCA2P51531 1590 aa19.4■□□□□ 0.7
CPSF4-213ENST00000484112 SMARCA4P51532 1647 aa19.39■□□□□ 0.69
CPSF4-213ENST00000484112 NESP48681 1621 aa19.37■□□□□ 0.69
CPSF4-213ENST00000484112 HMGXB3Q12766 1538 aa19.35■□□□□ 0.69
CPSF4-213ENST00000484112 BAZ1BQ9UIG0 1483 aaKnown RBP19.31■□□□□ 0.68
CPSF4-213ENST00000484112 BAZ1AQ9NRL2 1556 aaPredicted RBP19.27■□□□□ 0.68
CPSF4-213ENST00000484112 PEG3Q9GZU2 1588 aa19.15■□□□□ 0.66
CPSF4-213ENST00000484112 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
CPSF4-213ENST00000484112 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
CPSF4-213ENST00000484112 LAMC3Q9Y6N6 1575 aa19.13■□□□□ 0.65
CPSF4-213ENST00000484112 PDS5BQ9NTI5 1447 aa19.08■□□□□ 0.65
CPSF4-213ENST00000484112 KIF21AQ7Z4S6 1674 aa19.05■□□□□ 0.64
CPSF4-213ENST00000484112 CADPSQ9ULU8 1353 aa19■□□□□ 0.63
CPSF4-213ENST00000484112 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
CPSF4-213ENST00000484112 MRC2Q9UBG0 1479 aa18.92■□□□□ 0.62
CPSF4-213ENST00000484112 WIZO95785 1651 aa18.91■□□□□ 0.62
CPSF4-213ENST00000484112 WDR62O43379 1518 aa18.84■□□□□ 0.61
CPSF4-213ENST00000484112 CEP164Q9UPV0 1460 aa18.81■□□□□ 0.6
CPSF4-213ENST00000484112 FANCD2Q9BXW9 1451 aa18.78■□□□□ 0.6
CPSF4-213ENST00000484112 CFTRP13569 1480 aa18.71■□□□□ 0.59
CPSF4-213ENST00000484112 OSCARQ8IYS5 282 aa18.7■□□□□ 0.58
CPSF4-213ENST00000484112 RSF1Q96T23 1441 aaPredicted RBP18.69■□□□□ 0.58
CPSF4-213ENST00000484112 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
CPSF4-213ENST00000484112 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
CPSF4-213ENST00000484112 CCDC88BA6NC98 1476 aa18.46■□□□□ 0.55
CPSF4-213ENST00000484112 ZNF608Q9ULD9 1512 aaPredicted RBP18.45■□□□□ 0.54
CPSF4-213ENST00000484112 IFT140Q96RY7 1462 aa18.44■□□□□ 0.54
CPSF4-213ENST00000484112 PRDM2Q13029 1718 aa18.41■□□□□ 0.54
CPSF4-213ENST00000484112 RIMBP3CA6NJZ7 1639 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 RIMBP3BA6NNM3 1639 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 RIMBP3Q9UFD9 1639 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 TOPBP1Q92547 1522 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
CPSF4-213ENST00000484112 ABCC8Q09428 1581 aa18.31■□□□□ 0.52
CPSF4-213ENST00000484112 CYB5RLQ6IPT4 315 aa18.31■□□□□ 0.52
CPSF4-213ENST00000484112 FBLN2P98095 1184 aa18.3■□□□□ 0.52
CPSF4-213ENST00000484112 AQRO60306 1485 aaKnown RBP eCLIP18.29■□□□□ 0.522e-8■■■■■ 124.8
CPSF4-213ENST00000484112 EIF4G3O43432 1585 aaKnown RBP18.29■□□□□ 0.52
CPSF4-213ENST00000484112 DNMBPQ6XZF7 1577 aa18.27■□□□□ 0.52
CPSF4-213ENST00000484112 TRHP20396 242 aaPredicted RBP18.21■□□□□ 0.51
CPSF4-213ENST00000484112 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
CPSF4-213ENST00000484112 CHD1O14646 1710 aa18.19■□□□□ 0.5
CPSF4-213ENST00000484112 POLA1P09884 1462 aaPredicted RBP18.19■□□□□ 0.5
CPSF4-213ENST00000484112 RAD54L2Q9Y4B4 1467 aa18.17■□□□□ 0.5
CPSF4-213ENST00000484112 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
CPSF4-213ENST00000484112 SOGA1O94964 1423 aa18.15■□□□□ 0.5
CPSF4-213ENST00000484112 ARAP1Q96P48 1450 aa18.13■□□□□ 0.49
CPSF4-213ENST00000484112 CHMP7Q8WUX9 453 aaPredicted RBP18.09■□□□□ 0.49
CPSF4-213ENST00000484112 SNAPC4Q5SXM2 1469 aa18.07■□□□□ 0.48
CPSF4-213ENST00000484112 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
CPSF4-213ENST00000484112 CUX1P39880 1505 aa17.99■□□□□ 0.47
CPSF4-213ENST00000484112 GRIN2BQ13224 1484 aa17.97■□□□□ 0.47
CPSF4-213ENST00000484112 MAGI1Q96QZ7 1491 aaPredicted RBP17.97■□□□□ 0.47
CPSF4-213ENST00000484112 SYNJ1O43426 1573 aa17.96■□□□□ 0.47
CPSF4-213ENST00000484112 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
CPSF4-213ENST00000484112 WDR97A6NE52 1622 aa17.95■□□□□ 0.46
CPSF4-213ENST00000484112 SYNJ2O15056 1496 aa17.93■□□□□ 0.46
CPSF4-213ENST00000484112 GAPVD1Q14C86 1478 aa17.89■□□□□ 0.45
CPSF4-213ENST00000484112 SUPT5HO00267 1087 aaKnown RBP17.86■□□□□ 0.45
CPSF4-213ENST00000484112 PBRM1Q86U86 1689 aa17.84■□□□□ 0.45
CPSF4-213ENST00000484112 AEBP2Q6ZN18 517 aaPredicted RBP17.83■□□□□ 0.44
CPSF4-213ENST00000484112 ABCA10Q8WWZ4 1543 aa17.81■□□□□ 0.44
CPSF4-213ENST00000484112 ABCA5Q8WWZ7 1642 aa17.77■□□□□ 0.44
CPSF4-213ENST00000484112 WRNQ14191 1432 aaPredicted RBP eCLIP17.74■□□□□ 0.43
CPSF4-213ENST00000484112 GRIN2AQ12879 1464 aa17.74■□□□□ 0.43
CPSF4-213ENST00000484112 ERCC6L2Q5T890 1561 aa17.72■□□□□ 0.43
CPSF4-213ENST00000484112 CEP170Q5SW79 1584 aa17.67■□□□□ 0.42
CPSF4-213ENST00000484112 NUP160Q12769 1436 aa17.67■□□□□ 0.42
CPSF4-213ENST00000484112 ADAMTS12P58397 1594 aa17.66■□□□□ 0.42
CPSF4-213ENST00000484112 FHAD1B1AJZ9 1412 aa17.65■□□□□ 0.42
CPSF4-213ENST00000484112 TOP2BQ02880 1626 aa17.62■□□□□ 0.41
CPSF4-213ENST00000484112 BIVM-ERCC5R4GMW8 1640 aa17.6■□□□□ 0.41
CPSF4-213ENST00000484112 JPH4Q96JJ6 628 aa17.58■□□□□ 0.4
CPSF4-213ENST00000484112 ERICH3Q5RHP9 1530 aa17.57■□□□□ 0.4
CPSF4-213ENST00000484112 PRG4Q92954 1404 aaPredicted RBP17.57■□□□□ 0.4
CPSF4-213ENST00000484112 SHROOM2Q13796 1616 aa17.57■□□□□ 0.4
CPSF4-213ENST00000484112 NPM1P06748 294 aaKnown RBP eCLIP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms