RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
SMAD9-204ENST00000483941 ABCC9O60706 1549 aa29.58■■■□□ 2.33
SMAD9-204ENST00000483941 CCDC180Q9P1Z9 1646 aa29.24■■■□□ 2.27
SMAD9-204ENST00000483941 DNAJC5BQ9UF47 199 aa28.06■■■□□ 2.08
SMAD9-204ENST00000483941 RB1CC1Q8TDY2 1594 aa28.01■■■□□ 2.07
SMAD9-204ENST00000483941 NACADO15069 1562 aa27.68■■■□□ 2.02
SMAD9-204ENST00000483941 UNC13AQ9UPW8 1703 aa27.46■■□□□ 1.99
SMAD9-204ENST00000483941 PABPN1Q86U42 306 aaKnown RBP eCLIP27.38■■□□□ 1.97
SMAD9-204ENST00000483941 DCAF8L2P0C7V8 631 aa27.27■■□□□ 1.96
SMAD9-204ENST00000483941 BICRAQ9NZM4 1560 aa27.2■■□□□ 1.94
SMAD9-204ENST00000483941 MYO15BQ96JP2 1530 aa27.14■■□□□ 1.94
SMAD9-204ENST00000483941 ZCCHC6Q5VYS8 1495 aaKnown RBP26.88■■□□□ 1.89
SMAD9-204ENST00000483941 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
SMAD9-204ENST00000483941 CC2D2AQ9P2K1 1620 aa26.75■■□□□ 1.87
SMAD9-204ENST00000483941 CECR2Q9BXF3 1484 aa26.7■■□□□ 1.87
SMAD9-204ENST00000483941 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
SMAD9-204ENST00000483941 EIF4G1Q04637 1599 aaKnown RBP26.58■■□□□ 1.85
SMAD9-204ENST00000483941 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
SMAD9-204ENST00000483941 DNAJC5Q9H3Z4 198 aa26.12■■□□□ 1.77
SMAD9-204ENST00000483941 CUX2O14529 1486 aa25.72■■□□□ 1.71
SMAD9-204ENST00000483941 ERCC6Q03468 1493 aa25.6■■□□□ 1.69
SMAD9-204ENST00000483941 NCAPD3P42695 1498 aa25.5■■□□□ 1.67
SMAD9-204ENST00000483941 ATAD2BQ9ULI0 1458 aa25.37■■□□□ 1.65
SMAD9-204ENST00000483941 HMGXB3Q12766 1538 aa25.36■■□□□ 1.65
SMAD9-204ENST00000483941 SMARCA2P51531 1590 aa25.33■■□□□ 1.65
SMAD9-204ENST00000483941 SMARCA4P51532 1647 aa25.3■■□□□ 1.64
SMAD9-204ENST00000483941 NESP48681 1621 aa25.27■■□□□ 1.64
SMAD9-204ENST00000483941 THOC2Q8NI27 1593 aaKnown RBP25.21■■□□□ 1.63
SMAD9-204ENST00000483941 BAZ1BQ9UIG0 1483 aaKnown RBP25.14■■□□□ 1.61
SMAD9-204ENST00000483941 BAZ1AQ9NRL2 1556 aaPredicted RBP25.08■■□□□ 1.61
SMAD9-204ENST00000483941 LAMC3Q9Y6N6 1575 aa25.08■■□□□ 1.61
SMAD9-204ENST00000483941 PEG3Q9GZU2 1588 aa25.05■■□□□ 1.6
SMAD9-204ENST00000483941 KIF21AQ7Z4S6 1674 aa25.04■■□□□ 1.6
SMAD9-204ENST00000483941 PDS5BQ9NTI5 1447 aa24.89■■□□□ 1.58
SMAD9-204ENST00000483941 MROH2BQ7Z745 1585 aa24.82■■□□□ 1.56
SMAD9-204ENST00000483941 TRIM41Q8WV44 630 aa24.81■■□□□ 1.56
SMAD9-204ENST00000483941 SUPT5HO00267 1087 aaKnown RBP24.75■■□□□ 1.55
SMAD9-204ENST00000483941 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
SMAD9-204ENST00000483941 MRC2Q9UBG0 1479 aa24.74■■□□□ 1.55
SMAD9-204ENST00000483941 WDR62O43379 1518 aa24.72■■□□□ 1.55
SMAD9-204ENST00000483941 CADPSQ9ULU8 1353 aa24.68■■□□□ 1.54
SMAD9-204ENST00000483941 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
SMAD9-204ENST00000483941 WIZO95785 1651 aa24.54■■□□□ 1.52
SMAD9-204ENST00000483941 FANCD2Q9BXW9 1451 aa24.45■■□□□ 1.51
SMAD9-204ENST00000483941 CFTRP13569 1480 aa24.34■■□□□ 1.49
SMAD9-204ENST00000483941 OSCARQ8IYS5 282 aa24.34■■□□□ 1.49
SMAD9-204ENST00000483941 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
SMAD9-204ENST00000483941 URB2Q14146 1524 aaKnown RBP24.3■■□□□ 1.48
SMAD9-204ENST00000483941 RIMBP3CA6NJZ7 1639 aa24.24■■□□□ 1.47
SMAD9-204ENST00000483941 RIMBP3BA6NNM3 1639 aa24.24■■□□□ 1.47
SMAD9-204ENST00000483941 RIMBP3Q9UFD9 1639 aa24.24■■□□□ 1.47
SMAD9-204ENST00000483941 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
SMAD9-204ENST00000483941 ARHGEF11O15085 1522 aa24.08■■□□□ 1.45
SMAD9-204ENST00000483941 IFT140Q96RY7 1462 aa24.06■■□□□ 1.44
SMAD9-204ENST00000483941 ZNF608Q9ULD9 1512 aaPredicted RBP24.05■■□□□ 1.44
SMAD9-204ENST00000483941 CCDC88BA6NC98 1476 aa24.01■■□□□ 1.43
SMAD9-204ENST00000483941 EIF4G3O43432 1585 aaKnown RBP23.99■■□□□ 1.43
SMAD9-204ENST00000483941 TOPBP1Q92547 1522 aa23.95■■□□□ 1.43
SMAD9-204ENST00000483941 CHD1O14646 1710 aa23.92■■□□□ 1.42
SMAD9-204ENST00000483941 ABCC8Q09428 1581 aa23.86■■□□□ 1.41
SMAD9-204ENST00000483941 DNMBPQ6XZF7 1577 aa23.86■■□□□ 1.41
SMAD9-204ENST00000483941 TARBP1Q13395 1621 aaKnown RBP23.81■■□□□ 1.4
SMAD9-204ENST00000483941 CYB5RLQ6IPT4 315 aa23.81■■□□□ 1.4
SMAD9-204ENST00000483941 ARAP1Q96P48 1450 aa23.81■■□□□ 1.4
SMAD9-204ENST00000483941 AQRO60306 1485 aaKnown RBP eCLIP23.75■■□□□ 1.39
SMAD9-204ENST00000483941 TRHP20396 242 aaPredicted RBP23.72■■□□□ 1.39
SMAD9-204ENST00000483941 POLA1P09884 1462 aaPredicted RBP23.68■■□□□ 1.38
SMAD9-204ENST00000483941 FBLN2P98095 1184 aa23.64■■□□□ 1.37
SMAD9-204ENST00000483941 CLASP1Q7Z460 1538 aa23.59■■□□□ 1.37
SMAD9-204ENST00000483941 WDR97A6NE52 1622 aa23.57■■□□□ 1.36
SMAD9-204ENST00000483941 RAD54L2Q9Y4B4 1467 aa23.56■■□□□ 1.36
SMAD9-204ENST00000483941 SNAPC4Q5SXM2 1469 aa23.55■■□□□ 1.36
SMAD9-204ENST00000483941 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
SMAD9-204ENST00000483941 SYNJ1O43426 1573 aa23.53■■□□□ 1.36
SMAD9-204ENST00000483941 TDRD9Q8NDG6 1382 aaKnown RBP23.5■■□□□ 1.35
SMAD9-204ENST00000483941 SOGA1O94964 1423 aa23.5■■□□□ 1.35
SMAD9-204ENST00000483941 MAGI1Q96QZ7 1491 aaPredicted RBP23.48■■□□□ 1.35
SMAD9-204ENST00000483941 FGD5Q6ZNL6 1462 aa23.46■■□□□ 1.35
SMAD9-204ENST00000483941 GRIN2BQ13224 1484 aa23.4■■□□□ 1.34
SMAD9-204ENST00000483941 PBRM1Q86U86 1689 aa23.39■■□□□ 1.34
SMAD9-204ENST00000483941 SYNJ2O15056 1496 aa23.39■■□□□ 1.34
SMAD9-204ENST00000483941 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
SMAD9-204ENST00000483941 CHMP7Q8WUX9 453 aaPredicted RBP23.39■■□□□ 1.33
SMAD9-204ENST00000483941 CUX1P39880 1505 aa23.38■■□□□ 1.33
SMAD9-204ENST00000483941 WRNQ14191 1432 aaPredicted RBP eCLIP23.36■■□□□ 1.33
SMAD9-204ENST00000483941 GAPVD1Q14C86 1478 aa23.31■■□□□ 1.32
SMAD9-204ENST00000483941 ABCA5Q8WWZ7 1642 aa23.23■■□□□ 1.31
SMAD9-204ENST00000483941 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
SMAD9-204ENST00000483941 ABCA10Q8WWZ4 1543 aa23.17■■□□□ 1.3
SMAD9-204ENST00000483941 ERCC6L2Q5T890 1561 aa23.15■■□□□ 1.3
SMAD9-204ENST00000483941 BIVM-ERCC5R4GMW8 1640 aa23.12■■□□□ 1.29
SMAD9-204ENST00000483941 GRIN2AQ12879 1464 aa23.11■■□□□ 1.29
SMAD9-204ENST00000483941 ADAMTS12P58397 1594 aa23.1■■□□□ 1.29
SMAD9-204ENST00000483941 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
SMAD9-204ENST00000483941 SHROOM2Q13796 1616 aa23.06■■□□□ 1.28
SMAD9-204ENST00000483941 KIF13AQ9H1H9 1805 aa23.04■■□□□ 1.28
SMAD9-204ENST00000483941 NUP160Q12769 1436 aa23.04■■□□□ 1.28
SMAD9-204ENST00000483941 EEA1Q15075 1411 aa22.99■■□□□ 1.27
SMAD9-204ENST00000483941 FHAD1B1AJZ9 1412 aa22.92■■□□□ 1.26
SMAD9-204ENST00000483941 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms