RNA–Protein interactions for RNA: ENST00000482632.5

SPTLC1-206, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 5

Gene SPTLC1, Length 837 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-206ENST00000482632 AEBP2Q6ZN18 517 aaPredicted RBP25.45■■□□□ 1.66
SPTLC1-206ENST00000482632 CHIC1Q5VXU3 224 aa24.13■■□□□ 1.45
SPTLC1-206ENST00000482632 NISCHQ9Y2I1 1504 aa24.05■■□□□ 1.44
SPTLC1-206ENST00000482632 SENP3Q9H4L4 574 aaPredicted RBP21.74■■□□□ 1.07
SPTLC1-206ENST00000482632 PHF23Q9BUL5 403 aaPredicted RBP21.44■■□□□ 1.02
SPTLC1-206ENST00000482632 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
SPTLC1-206ENST00000482632 ABCC9O60706 1549 aa20.97■□□□□ 0.95
SPTLC1-206ENST00000482632 FOXD1Q16676 465 aa20.25■□□□□ 0.83
SPTLC1-206ENST00000482632 DCAF8L2P0C7V8 631 aa20.24■□□□□ 0.83
SPTLC1-206ENST00000482632 RB1CC1Q8TDY2 1594 aa20.15■□□□□ 0.82
SPTLC1-206ENST00000482632 DNAJC5BQ9UF47 199 aa20.12■□□□□ 0.81
SPTLC1-206ENST00000482632 NACADO15069 1562 aa20.08■□□□□ 0.81
SPTLC1-206ENST00000482632 ZCCHC6Q5VYS8 1495 aaKnown RBP20.04■□□□□ 0.8
SPTLC1-206ENST00000482632 MYO15BQ96JP2 1530 aa19.87■□□□□ 0.77
SPTLC1-206ENST00000482632 DCAF1Q9Y4B6 1507 aa19.83■□□□□ 0.77
SPTLC1-206ENST00000482632 UNC13AQ9UPW8 1703 aa19.76■□□□□ 0.75
SPTLC1-206ENST00000482632 PLPPR3Q6T4P5 718 aa19.73■□□□□ 0.75
SPTLC1-206ENST00000482632 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
SPTLC1-206ENST00000482632 PABPN1Q86U42 306 aaKnown RBP eCLIP19.59■□□□□ 0.73
SPTLC1-206ENST00000482632 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
SPTLC1-206ENST00000482632 SHROOM4Q9ULL8 1493 aa19.22■□□□□ 0.67
SPTLC1-206ENST00000482632 MSH5O43196 834 aa19■□□□□ 0.63
SPTLC1-206ENST00000482632 EIF4G1Q04637 1599 aaKnown RBP19■□□□□ 0.63
SPTLC1-206ENST00000482632 CC2D2AQ9P2K1 1620 aa18.95■□□□□ 0.62
SPTLC1-206ENST00000482632 PIAS4Q8N2W9 510 aaPredicted RBP18.9■□□□□ 0.62
SPTLC1-206ENST00000482632 DNAJC5Q9H3Z4 198 aa18.88■□□□□ 0.61
SPTLC1-206ENST00000482632 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
SPTLC1-206ENST00000482632 ADRA2BP18089 450 aa18.81■□□□□ 0.6
SPTLC1-206ENST00000482632 CECR2Q9BXF3 1484 aa18.79■□□□□ 0.6
SPTLC1-206ENST00000482632 SMARCA4P51532 1647 aa18.71■□□□□ 0.58
SPTLC1-206ENST00000482632 BAZ1AQ9NRL2 1556 aaPredicted RBP18.66■□□□□ 0.58
SPTLC1-206ENST00000482632 POTEDQ86YR6 584 aa18.61■□□□□ 0.57
SPTLC1-206ENST00000482632 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
SPTLC1-206ENST00000482632 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
SPTLC1-206ENST00000482632 ATAD2BQ9ULI0 1458 aa18.54■□□□□ 0.56
SPTLC1-206ENST00000482632 NCAPD3P42695 1498 aa18.47■□□□□ 0.55
SPTLC1-206ENST00000482632 BAZ1BQ9UIG0 1483 aaKnown RBP18.46■□□□□ 0.54
SPTLC1-206ENST00000482632 HMGXB3Q12766 1538 aa18.44■□□□□ 0.54
SPTLC1-206ENST00000482632 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
SPTLC1-206ENST00000482632 WIZO95785 1651 aa18.42■□□□□ 0.54
SPTLC1-206ENST00000482632 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
SPTLC1-206ENST00000482632 TOP2AP11388 1531 aaKnown RBP18.18■□□□□ 0.5
SPTLC1-206ENST00000482632 NESP48681 1621 aa18.13■□□□□ 0.49
SPTLC1-206ENST00000482632 ERCC6Q03468 1493 aa18.1■□□□□ 0.49
SPTLC1-206ENST00000482632 LAMC3Q9Y6N6 1575 aa18.06■□□□□ 0.48
SPTLC1-206ENST00000482632 SUPT5HO00267 1087 aaKnown RBP18.03■□□□□ 0.48
SPTLC1-206ENST00000482632 KIF21AQ7Z4S6 1674 aa17.99■□□□□ 0.47
SPTLC1-206ENST00000482632 CUX2O14529 1486 aa17.97■□□□□ 0.47
SPTLC1-206ENST00000482632 CADPSQ9ULU8 1353 aa17.97■□□□□ 0.47
SPTLC1-206ENST00000482632 CCDC88BA6NC98 1476 aa17.95■□□□□ 0.46
SPTLC1-206ENST00000482632 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
SPTLC1-206ENST00000482632 PRDM2Q13029 1718 aa17.89■□□□□ 0.45
SPTLC1-206ENST00000482632 CFTRP13569 1480 aa17.86■□□□□ 0.45
SPTLC1-206ENST00000482632 THOC2Q8NI27 1593 aaKnown RBP17.84■□□□□ 0.45
SPTLC1-206ENST00000482632 TRIM41Q8WV44 630 aa17.83■□□□□ 0.44
SPTLC1-206ENST00000482632 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
SPTLC1-206ENST00000482632 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
SPTLC1-206ENST00000482632 MRC2Q9UBG0 1479 aa17.76■□□□□ 0.43
SPTLC1-206ENST00000482632 WDR62O43379 1518 aa17.67■□□□□ 0.42
SPTLC1-206ENST00000482632 URB2Q14146 1524 aaKnown RBP17.63■□□□□ 0.41
SPTLC1-206ENST00000482632 DNMBPQ6XZF7 1577 aa17.53■□□□□ 0.4
SPTLC1-206ENST00000482632 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
SPTLC1-206ENST00000482632 ABCC8Q09428 1581 aa17.5■□□□□ 0.39
SPTLC1-206ENST00000482632 CUX1P39880 1505 aa17.42■□□□□ 0.38
SPTLC1-206ENST00000482632 IFT140Q96RY7 1462 aa17.4■□□□□ 0.38
SPTLC1-206ENST00000482632 PPP4R3CPQ6ZMV5 832 aa17.4■□□□□ 0.38
SPTLC1-206ENST00000482632 POLA1P09884 1462 aaPredicted RBP17.37■□□□□ 0.37
SPTLC1-206ENST00000482632 FGD5Q6ZNL6 1462 aa17.37■□□□□ 0.37
SPTLC1-206ENST00000482632 KCNA4P22459 653 aa17.35■□□□□ 0.37
SPTLC1-206ENST00000482632 ZNF608Q9ULD9 1512 aaPredicted RBP17.34■□□□□ 0.37
SPTLC1-206ENST00000482632 TARBP1Q13395 1621 aaKnown RBP17.33■□□□□ 0.37
SPTLC1-206ENST00000482632 RAD54L2Q9Y4B4 1467 aa17.33■□□□□ 0.37
SPTLC1-206ENST00000482632 SOGA1O94964 1423 aa17.32■□□□□ 0.36
SPTLC1-206ENST00000482632 WRNQ14191 1432 aaPredicted RBP eCLIP17.32■□□□□ 0.36
SPTLC1-206ENST00000482632 EIF4G3O43432 1585 aaKnown RBP17.32■□□□□ 0.36
SPTLC1-206ENST00000482632 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
SPTLC1-206ENST00000482632 BIVM-ERCC5R4GMW8 1640 aa17.29■□□□□ 0.36
SPTLC1-206ENST00000482632 MAPK8IP2Q13387 824 aaPredicted RBP17.29■□□□□ 0.36
SPTLC1-206ENST00000482632 TOP2BQ02880 1626 aa17.28■□□□□ 0.36
SPTLC1-206ENST00000482632 AQRO60306 1485 aaKnown RBP eCLIP17.25■□□□□ 0.35
SPTLC1-206ENST00000482632 SCAF1Q9H7N4 1312 aaKnown RBP17.25■□□□□ 0.35
SPTLC1-206ENST00000482632 WDR97A6NE52 1622 aa17.24■□□□□ 0.35
SPTLC1-206ENST00000482632 DMRT2Q9Y5R5 561 aa17.23■□□□□ 0.35
SPTLC1-206ENST00000482632 TDRD9Q8NDG6 1382 aaKnown RBP17.23■□□□□ 0.35
SPTLC1-206ENST00000482632 PBRM1Q86U86 1689 aa17.18■□□□□ 0.34
SPTLC1-206ENST00000482632 ABCA10Q8WWZ4 1543 aa17.16■□□□□ 0.34
SPTLC1-206ENST00000482632 CHD1O14646 1710 aa17.15■□□□□ 0.34
SPTLC1-206ENST00000482632 GAPVD1Q14C86 1478 aa17.13■□□□□ 0.33
SPTLC1-206ENST00000482632 FBLN2P98095 1184 aa17.13■□□□□ 0.33
SPTLC1-206ENST00000482632 ABCA5Q8WWZ7 1642 aa17.12■□□□□ 0.33
SPTLC1-206ENST00000482632 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
SPTLC1-206ENST00000482632 SNAPC4Q5SXM2 1469 aa17.12■□□□□ 0.33
SPTLC1-206ENST00000482632 GRIN2BQ13224 1484 aa17.11■□□□□ 0.33
SPTLC1-206ENST00000482632 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
SPTLC1-206ENST00000482632 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
SPTLC1-206ENST00000482632 CHMP7Q8WUX9 453 aaPredicted RBP17.03■□□□□ 0.32
SPTLC1-206ENST00000482632 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
SPTLC1-206ENST00000482632 RIMBP3CA6NJZ7 1639 aa16.98■□□□□ 0.31
SPTLC1-206ENST00000482632 RIMBP3BA6NNM3 1639 aa16.98■□□□□ 0.31
SPTLC1-206ENST00000482632 RIMBP3Q9UFD9 1639 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms