RNA–Protein interactions for RNA: ENST00000480750.3

SRGAP3-206, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-206ENST00000480750 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
SRGAP3-206ENST00000480750 CCDC180Q9P1Z9 1646 aa20.02■□□□□ 0.79
SRGAP3-206ENST00000480750 ABCC9O60706 1549 aa19.75■□□□□ 0.75
SRGAP3-206ENST00000480750 RB1CC1Q8TDY2 1594 aa18.93■□□□□ 0.62
SRGAP3-206ENST00000480750 DCAF8L2P0C7V8 631 aa18.87■□□□□ 0.61
SRGAP3-206ENST00000480750 NACADO15069 1562 aa18.82■□□□□ 0.6
SRGAP3-206ENST00000480750 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.56
SRGAP3-206ENST00000480750 UNC13AQ9UPW8 1703 aa18.57■□□□□ 0.56
SRGAP3-206ENST00000480750 ZCCHC6Q5VYS8 1495 aaKnown RBP18.54■□□□□ 0.56
SRGAP3-206ENST00000480750 PABPN1Q86U42 306 aaKnown RBP eCLIP18.45■□□□□ 0.54
SRGAP3-206ENST00000480750 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
SRGAP3-206ENST00000480750 DNAJC5BQ9UF47 199 aa18.32■□□□□ 0.52
SRGAP3-206ENST00000480750 BICRAQ9NZM4 1560 aa18.3■□□□□ 0.52
SRGAP3-206ENST00000480750 SCRIBQ14160 1630 aa18.26■□□□□ 0.51
SRGAP3-206ENST00000480750 SHROOM4Q9ULL8 1493 aa18.09■□□□□ 0.49
SRGAP3-206ENST00000480750 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
SRGAP3-206ENST00000480750 CC2D2AQ9P2K1 1620 aa17.87■□□□□ 0.45
SRGAP3-206ENST00000480750 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
SRGAP3-206ENST00000480750 AEBP2Q6ZN18 517 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-206ENST00000480750 SMARCA4P51532 1647 aa17.41■□□□□ 0.38
SRGAP3-206ENST00000480750 BAZ1AQ9NRL2 1556 aaPredicted RBP17.36■□□□□ 0.37
SRGAP3-206ENST00000480750 SMARCA2P51531 1590 aa17.33■□□□□ 0.37
SRGAP3-206ENST00000480750 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
SRGAP3-206ENST00000480750 ATAD2BQ9ULI0 1458 aa17.31■□□□□ 0.36
SRGAP3-206ENST00000480750 HMGXB3Q12766 1538 aa17.26■□□□□ 0.35
SRGAP3-206ENST00000480750 BAZ1BQ9UIG0 1483 aaKnown RBP17.22■□□□□ 0.35
SRGAP3-206ENST00000480750 MROH2BQ7Z745 1585 aa17.2■□□□□ 0.34
SRGAP3-206ENST00000480750 PEG3Q9GZU2 1588 aa17.19■□□□□ 0.34
SRGAP3-206ENST00000480750 ERCC6Q03468 1493 aa17.09■□□□□ 0.33
SRGAP3-206ENST00000480750 WIZO95785 1651 aa17.07■□□□□ 0.32
SRGAP3-206ENST00000480750 NESP48681 1621 aa17■□□□□ 0.31
SRGAP3-206ENST00000480750 LAMC3Q9Y6N6 1575 aa16.97■□□□□ 0.31
SRGAP3-206ENST00000480750 CUX2O14529 1486 aa16.92■□□□□ 0.3
SRGAP3-206ENST00000480750 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
SRGAP3-206ENST00000480750 KIF21AQ7Z4S6 1674 aa16.89■□□□□ 0.29
SRGAP3-206ENST00000480750 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
SRGAP3-206ENST00000480750 TOP2AP11388 1531 aaKnown RBP16.85■□□□□ 0.29
SRGAP3-206ENST00000480750 CHIC1Q5VXU3 224 aa16.83■□□□□ 0.28
SRGAP3-206ENST00000480750 CADPSQ9ULU8 1353 aa16.82■□□□□ 0.28
SRGAP3-206ENST00000480750 THOC2Q8NI27 1593 aaKnown RBP16.81■□□□□ 0.28
SRGAP3-206ENST00000480750 PRDM2Q13029 1718 aa16.7■□□□□ 0.26
SRGAP3-206ENST00000480750 MRC2Q9UBG0 1479 aa16.68■□□□□ 0.26
SRGAP3-206ENST00000480750 CEP164Q9UPV0 1460 aa16.68■□□□□ 0.26
SRGAP3-206ENST00000480750 CFTRP13569 1480 aa16.67■□□□□ 0.26
SRGAP3-206ENST00000480750 FANCD2Q9BXW9 1451 aa16.67■□□□□ 0.26
SRGAP3-206ENST00000480750 WDR62O43379 1518 aa16.62■□□□□ 0.25
SRGAP3-206ENST00000480750 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
SRGAP3-206ENST00000480750 DNAJC5Q9H3Z4 198 aa16.6■□□□□ 0.25
SRGAP3-206ENST00000480750 SUPT5HO00267 1087 aaKnown RBP16.51■□□□□ 0.23
SRGAP3-206ENST00000480750 URB2Q14146 1524 aaKnown RBP16.49■□□□□ 0.23
SRGAP3-206ENST00000480750 ABCC8Q09428 1581 aa16.38■□□□□ 0.21
SRGAP3-206ENST00000480750 TOPBP1Q92547 1522 aa16.37■□□□□ 0.21
SRGAP3-206ENST00000480750 DNMBPQ6XZF7 1577 aa16.35■□□□□ 0.21
SRGAP3-206ENST00000480750 IFT140Q96RY7 1462 aa16.32■□□□□ 0.2
SRGAP3-206ENST00000480750 ZNF608Q9ULD9 1512 aaPredicted RBP16.24■□□□□ 0.19
SRGAP3-206ENST00000480750 EIF4G3O43432 1585 aaKnown RBP16.23■□□□□ 0.19
SRGAP3-206ENST00000480750 TARBP1Q13395 1621 aaKnown RBP16.21■□□□□ 0.19
SRGAP3-206ENST00000480750 POLA1P09884 1462 aaPredicted RBP16.21■□□□□ 0.19
SRGAP3-206ENST00000480750 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
SRGAP3-206ENST00000480750 FGD5Q6ZNL6 1462 aa16.16■□□□□ 0.18
SRGAP3-206ENST00000480750 CUX1P39880 1505 aa16.15■□□□□ 0.18
SRGAP3-206ENST00000480750 SOGA1O94964 1423 aa16.15■□□□□ 0.18
SRGAP3-206ENST00000480750 RAD54L2Q9Y4B4 1467 aa16.15■□□□□ 0.18
SRGAP3-206ENST00000480750 AQRO60306 1485 aaKnown RBP eCLIP16.13■□□□□ 0.17
SRGAP3-206ENST00000480750 CHD1O14646 1710 aa16.12■□□□□ 0.17
SRGAP3-206ENST00000480750 WDR97A6NE52 1622 aa16.09■□□□□ 0.17
SRGAP3-206ENST00000480750 TRIM41Q8WV44 630 aa16.07■□□□□ 0.16
SRGAP3-206ENST00000480750 TDRD9Q8NDG6 1382 aaKnown RBP16.07■□□□□ 0.16
SRGAP3-206ENST00000480750 FBLN2P98095 1184 aa16.06■□□□□ 0.16
SRGAP3-206ENST00000480750 PBRM1Q86U86 1689 aa16.04■□□□□ 0.16
SRGAP3-206ENST00000480750 BIVM-ERCC5R4GMW8 1640 aa16.01■□□□□ 0.15
SRGAP3-206ENST00000480750 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
SRGAP3-206ENST00000480750 TOP2BQ02880 1626 aa16■□□□□ 0.15
SRGAP3-206ENST00000480750 RIMBP3CA6NJZ7 1639 aa15.99■□□□□ 0.15
SRGAP3-206ENST00000480750 RIMBP3BA6NNM3 1639 aa15.99■□□□□ 0.15
SRGAP3-206ENST00000480750 RIMBP3Q9UFD9 1639 aa15.99■□□□□ 0.15
SRGAP3-206ENST00000480750 WRNQ14191 1432 aaPredicted RBP eCLIP15.99■□□□□ 0.15
SRGAP3-206ENST00000480750 GRIN2BQ13224 1484 aa15.98■□□□□ 0.15
SRGAP3-206ENST00000480750 SYNJ1O43426 1573 aa15.97■□□□□ 0.15
SRGAP3-206ENST00000480750 GAPVD1Q14C86 1478 aa15.97■□□□□ 0.15
SRGAP3-206ENST00000480750 MAGI1Q96QZ7 1491 aaPredicted RBP15.97■□□□□ 0.15
SRGAP3-206ENST00000480750 ABCA10Q8WWZ4 1543 aa15.96■□□□□ 0.15
SRGAP3-206ENST00000480750 ABCA5Q8WWZ7 1642 aa15.95■□□□□ 0.14
SRGAP3-206ENST00000480750 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
SRGAP3-206ENST00000480750 ARHGEF11O15085 1522 aa15.93■□□□□ 0.14
SRGAP3-206ENST00000480750 SYNJ2O15056 1496 aa15.91■□□□□ 0.14
SRGAP3-206ENST00000480750 CLASP1Q7Z460 1538 aa15.84■□□□□ 0.13
SRGAP3-206ENST00000480750 ADAMTS12P58397 1594 aa15.83■□□□□ 0.12
SRGAP3-206ENST00000480750 CYB5RLQ6IPT4 315 aa15.8■□□□□ 0.12
SRGAP3-206ENST00000480750 ERICH3Q5RHP9 1530 aa15.79■□□□□ 0.12
SRGAP3-206ENST00000480750 GRIN2AQ12879 1464 aa15.78■□□□□ 0.12
SRGAP3-206ENST00000480750 ARAP1Q96P48 1450 aa15.77■□□□□ 0.11
SRGAP3-206ENST00000480750 FHAD1B1AJZ9 1412 aa15.76■□□□□ 0.11
SRGAP3-206ENST00000480750 CEP170Q5SW79 1584 aa15.72■□□□□ 0.11
SRGAP3-206ENST00000480750 KIF27Q86VH2 1401 aa15.68■□□□□ 0.1
SRGAP3-206ENST00000480750 NUP160Q12769 1436 aa15.68■□□□□ 0.1
SRGAP3-206ENST00000480750 CUL7Q14999 1698 aa15.67■□□□□ 0.1
SRGAP3-206ENST00000480750 SHROOM2Q13796 1616 aa15.63■□□□□ 0.09
SRGAP3-206ENST00000480750 TRHP20396 242 aaPredicted RBP15.61■□□□□ 0.09
SRGAP3-206ENST00000480750 ERCC6L2Q5T890 1561 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms