RNA–Protein interactions for RNA: ENST00000480393.5

TNFRSF25-213, Transcript of TNF receptor superfamily member 25, humanhuman

TSL 1 (best)

Gene TNFRSF25, Length 1,706 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF25-213ENST00000480393 NISCHQ9Y2I1 1504 aa62.3■■■■■ 7.56
TNFRSF25-213ENST00000480393 CCDC180Q9P1Z9 1646 aa54.21■■■■■ 6.27
TNFRSF25-213ENST00000480393 ZCCHC6Q5VYS8 1495 aaKnown RBP52.41■■■■■ 5.98
TNFRSF25-213ENST00000480393 DCAF1Q9Y4B6 1507 aa51.48■■■■■ 5.83
TNFRSF25-213ENST00000480393 DCAF8L2P0C7V8 631 aa51.47■■■■■ 5.83
TNFRSF25-213ENST00000480393 SHROOM4Q9ULL8 1493 aa51.14■■■■■ 5.78
TNFRSF25-213ENST00000480393 ABCC9O60706 1549 aa51.06■■■■■ 5.76
TNFRSF25-213ENST00000480393 MYO15BQ96JP2 1530 aa50.75■■■■■ 5.71
TNFRSF25-213ENST00000480393 NACADO15069 1562 aa50.41■■■■■ 5.66
TNFRSF25-213ENST00000480393 SCRIBQ14160 1630 aa49.97■■■■■ 5.59
TNFRSF25-213ENST00000480393 RB1CC1Q8TDY2 1594 aa49.95■■■■■ 5.59
TNFRSF25-213ENST00000480393 SUPT5HO00267 1087 aaKnown RBP49.34■■■■■ 5.49
TNFRSF25-213ENST00000480393 UNC13AQ9UPW8 1703 aa48.91■■■■■ 5.42
TNFRSF25-213ENST00000480393 RSF1Q96T23 1441 aaPredicted RBP48.44■■■■■ 5.35
TNFRSF25-213ENST00000480393 CECR2Q9BXF3 1484 aa48.39■■■■■ 5.34
TNFRSF25-213ENST00000480393 BICRAQ9NZM4 1560 aa48.38■■■■■ 5.33
TNFRSF25-213ENST00000480393 PABPN1Q86U42 306 aaKnown RBP eCLIP48.21■■■■■ 5.31
TNFRSF25-213ENST00000480393 MROH2BQ7Z745 1585 aa48.16■■■■■ 5.3
TNFRSF25-213ENST00000480393 BAZ1AQ9NRL2 1556 aaPredicted RBP48.12■■■■■ 5.29
TNFRSF25-213ENST00000480393 SMARCA4P51532 1647 aa47.86■■■■■ 5.25
TNFRSF25-213ENST00000480393 WIZO95785 1651 aa47.8■■■■■ 5.24
TNFRSF25-213ENST00000480393 TOP2AP11388 1531 aaKnown RBP47.32■■■■■ 5.17
TNFRSF25-213ENST00000480393 CHIC1Q5VXU3 224 aa47.3■■■■■ 5.16
TNFRSF25-213ENST00000480393 PEG3Q9GZU2 1588 aa47.2■■■■■ 5.15
TNFRSF25-213ENST00000480393 SMARCA2P51531 1590 aa46.99■■■■■ 5.11
TNFRSF25-213ENST00000480393 ATAD2BQ9ULI0 1458 aa46.98■■■■■ 5.11
TNFRSF25-213ENST00000480393 EIF4G1Q04637 1599 aaKnown RBP46.94■■■■■ 5.1
TNFRSF25-213ENST00000480393 CCDC88BA6NC98 1476 aa46.82■■■■■ 5.09
TNFRSF25-213ENST00000480393 BAZ1BQ9UIG0 1483 aaKnown RBP46.79■■■■■ 5.08
TNFRSF25-213ENST00000480393 HMGXB3Q12766 1538 aa46.5■■■■■ 5.03
TNFRSF25-213ENST00000480393 NCAPD3P42695 1498 aa46.49■■■■■ 5.03
TNFRSF25-213ENST00000480393 TRIM41Q8WV44 630 aa46.35■■■■■ 5.01
TNFRSF25-213ENST00000480393 CC2D2AQ9P2K1 1620 aa46.19■■■■■ 4.98
TNFRSF25-213ENST00000480393 ABCC8Q09428 1581 aa45.97■■■■■ 4.95
TNFRSF25-213ENST00000480393 WRNQ14191 1432 aaPredicted RBP eCLIP45.63■■■■■ 4.9
TNFRSF25-213ENST00000480393 CFTRP13569 1480 aa45.56■■■■■ 4.88
TNFRSF25-213ENST00000480393 FAM9AQ8IZU1 332 aaPredicted RBP45.55■■■■■ 4.88
TNFRSF25-213ENST00000480393 LOC105371045A0A1W2PR82 267 aa45.52■■■■■ 4.88
TNFRSF25-213ENST00000480393 SYNJ1O43426 1573 aa45.43■■■■■ 4.86
TNFRSF25-213ENST00000480393 PRDM2Q13029 1718 aa45.38■■■■■ 4.86
TNFRSF25-213ENST00000480393 CADPSQ9ULU8 1353 aa45.36■■■■■ 4.85
TNFRSF25-213ENST00000480393 TOP2BQ02880 1626 aa45.21■■■■■ 4.83
TNFRSF25-213ENST00000480393 BIVM-ERCC5R4GMW8 1640 aa45.15■■■■■ 4.82
TNFRSF25-213ENST00000480393 SOGA1O94964 1423 aa45.14■■■■■ 4.82
TNFRSF25-213ENST00000480393 EEA1Q15075 1411 aa45.14■■■■■ 4.82
TNFRSF25-213ENST00000480393 CUX1P39880 1505 aa45.02■■■■■ 4.8
TNFRSF25-213ENST00000480393 EHMT2Q96KQ7 1210 aa44.95■■■■■ 4.79
TNFRSF25-213ENST00000480393 RUSC2Q8N2Y8 1516 aa44.94■■■■■ 4.78
TNFRSF25-213ENST00000480393 LAMC3Q9Y6N6 1575 aa44.92■■■■■ 4.78
TNFRSF25-213ENST00000480393 FANCD2Q9BXW9 1451 aa44.9■■■■■ 4.78
TNFRSF25-213ENST00000480393 NESP48681 1621 aa44.89■■■■■ 4.78
TNFRSF25-213ENST00000480393 DNAJC5BQ9UF47 199 aa44.85■■■■■ 4.77
TNFRSF25-213ENST00000480393 CSRNP3Q8WYN3 585 aa44.84■■■■■ 4.77
TNFRSF25-213ENST00000480393 CEP164Q9UPV0 1460 aa44.61■■■■■ 4.73
TNFRSF25-213ENST00000480393 PDS5BQ9NTI5 1447 aa44.58■■■■■ 4.73
TNFRSF25-213ENST00000480393 GOLGA3Q08378 1498 aa44.56■■■■■ 4.72
TNFRSF25-213ENST00000480393 DNMBPQ6XZF7 1577 aa44.55■■■■■ 4.72
TNFRSF25-213ENST00000480393 KIF21BO75037 1637 aa44.53■■■■■ 4.72
TNFRSF25-213ENST00000480393 FGD5Q6ZNL6 1462 aa44.51■■■■■ 4.72
TNFRSF25-213ENST00000480393 KIF27Q86VH2 1401 aa44.46■■■■■ 4.71
TNFRSF25-213ENST00000480393 TOPBP1Q92547 1522 aa44.43■■■■■ 4.7
TNFRSF25-213ENST00000480393 TNIKQ9UKE5 1360 aa44.42■■■■■ 4.7
TNFRSF25-213ENST00000480393 KIF21AQ7Z4S6 1674 aa44.36■■■■■ 4.69
TNFRSF25-213ENST00000480393 UBTFP17480 764 aaKnown RBP44.36■■■■■ 4.69
TNFRSF25-213ENST00000480393 CUX2O14529 1486 aa44.3■■■■■ 4.68
TNFRSF25-213ENST00000480393 URB2Q14146 1524 aaKnown RBP44.3■■■■■ 4.68
TNFRSF25-213ENST00000480393 CEP162Q5TB80 1403 aa44.25■■■■■ 4.67
TNFRSF25-213ENST00000480393 POLA1P09884 1462 aaPredicted RBP44.24■■■■■ 4.67
TNFRSF25-213ENST00000480393 RAPGEF2Q9Y4G8 1499 aa44.23■■■■■ 4.67
TNFRSF25-213ENST00000480393 PRXQ9BXM0 1461 aa44.18■■■■■ 4.66
TNFRSF25-213ENST00000480393 ERICH3Q5RHP9 1530 aa44.17■■■■■ 4.66
TNFRSF25-213ENST00000480393 RAD54L2Q9Y4B4 1467 aa44.1■■■■■ 4.65
TNFRSF25-213ENST00000480393 ABCA10Q8WWZ4 1543 aa44.09■■■■■ 4.65
TNFRSF25-213ENST00000480393 MRC2Q9UBG0 1479 aa44.01■■■■■ 4.64
TNFRSF25-213ENST00000480393 IGF1RP08069 1367 aa43.97■■■■■ 4.63
TNFRSF25-213ENST00000480393 WDR97A6NE52 1622 aa43.92■■■■■ 4.62
TNFRSF25-213ENST00000480393 CLIP1P30622 1438 aa43.85■■■■■ 4.61
TNFRSF25-213ENST00000480393 ERCC6Q03468 1493 aa43.8■■■■■ 4.6
TNFRSF25-213ENST00000480393 CARMIL1Q5VZK9 1371 aa43.8■■■■■ 4.6
TNFRSF25-213ENST00000480393 PCGF6Q9BYE7 350 aa43.78■■■■■ 4.6
TNFRSF25-213ENST00000480393 WDR62O43379 1518 aa43.73■■■■■ 4.59
TNFRSF25-213ENST00000480393 ABCA5Q8WWZ7 1642 aa43.72■■■■■ 4.59
TNFRSF25-213ENST00000480393 TARBP1Q13395 1621 aaKnown RBP43.72■■■■■ 4.59
TNFRSF25-213ENST00000480393 TRIM26Q12899 539 aaPredicted RBP43.7■■■■■ 4.59
TNFRSF25-213ENST00000480393 CUL7Q14999 1698 aa43.69■■■■■ 4.58
TNFRSF25-213ENST00000480393 TDRD9Q8NDG6 1382 aaKnown RBP43.65■■■■■ 4.58
TNFRSF25-213ENST00000480393 GAPVD1Q14C86 1478 aa43.63■■■■■ 4.58
TNFRSF25-213ENST00000480393 RANGAP1P46060 587 aaPredicted RBP43.61■■■■■ 4.57
TNFRSF25-213ENST00000480393 THOC2Q8NI27 1593 aaKnown RBP43.54■■■■■ 4.56
TNFRSF25-213ENST00000480393 IFT140Q96RY7 1462 aa43.5■■■■■ 4.55
TNFRSF25-213ENST00000480393 VPS8Q8N3P4 1428 aa43.48■■■■■ 4.55
TNFRSF25-213ENST00000480393 PPARGC1BQ86YN6 1023 aaKnown RBP43.43■■■■■ 4.54
TNFRSF25-213ENST00000480393 PBRM1Q86U86 1689 aa43.38■■■■■ 4.54
TNFRSF25-213ENST00000480393 ARAP1Q96P48 1450 aa43.36■■■■■ 4.53
TNFRSF25-213ENST00000480393 AQRO60306 1485 aaKnown RBP eCLIP43.33■■■■■ 4.53
TNFRSF25-213ENST00000480393 ARHGAP35Q9NRY4 1499 aa43.28■■■■■ 4.52
TNFRSF25-213ENST00000480393 GRIN2BQ13224 1484 aa43.25■■■■■ 4.51
TNFRSF25-213ENST00000480393 CTTNBP2Q8WZ74 1663 aa43.24■■■■■ 4.51
TNFRSF25-213ENST00000480393 ZNF608Q9ULD9 1512 aaPredicted RBP43.24■■■■■ 4.51
TNFRSF25-213ENST00000480393 FHAD1B1AJZ9 1412 aa43.16■■■■■ 4.5
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms