RNA–Protein interactions for RNA: ENST00000479782.1

RPP40-205, Transcript of ribonuclease P/MRP subunit p40, humanhuman

TSL 5

Gene RPP40, Length 500 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP40-205ENST00000479782 NISCHQ9Y2I1 1504 aa33.12■■■□□ 2.89
RPP40-205ENST00000479782 CCDC180Q9P1Z9 1646 aa29.19■■■□□ 2.26
RPP40-205ENST00000479782 ABCC9O60706 1549 aa27.77■■■□□ 2.04
RPP40-205ENST00000479782 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.03
RPP40-205ENST00000479782 DCAF1Q9Y4B6 1507 aa27.47■■□□□ 1.99
RPP40-205ENST00000479782 MYO15BQ96JP2 1530 aa27.33■■□□□ 1.97
RPP40-205ENST00000479782 DCAF8L2P0C7V8 631 aa27.29■■□□□ 1.96
RPP40-205ENST00000479782 NACADO15069 1562 aa27.24■■□□□ 1.95
RPP40-205ENST00000479782 RB1CC1Q8TDY2 1594 aa27.09■■□□□ 1.93
RPP40-205ENST00000479782 SCRIBQ14160 1630 aa26.63■■□□□ 1.85
RPP40-205ENST00000479782 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
RPP40-205ENST00000479782 UNC13AQ9UPW8 1703 aa26.5■■□□□ 1.83
RPP40-205ENST00000479782 BICRAQ9NZM4 1560 aa26.22■■□□□ 1.79
RPP40-205ENST00000479782 PABPN1Q86U42 306 aaKnown RBP eCLIP26.03■■□□□ 1.76
RPP40-205ENST00000479782 CECR2Q9BXF3 1484 aa25.67■■□□□ 1.7
RPP40-205ENST00000479782 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
RPP40-205ENST00000479782 SMARCA4P51532 1647 aa25.56■■□□□ 1.68
RPP40-205ENST00000479782 MROH2BQ7Z745 1585 aa25.52■■□□□ 1.68
RPP40-205ENST00000479782 EIF4G1Q04637 1599 aaKnown RBP25.48■■□□□ 1.67
RPP40-205ENST00000479782 RSF1Q96T23 1441 aaPredicted RBP25.47■■□□□ 1.67
RPP40-205ENST00000479782 SUPT5HO00267 1087 aaKnown RBP25.33■■□□□ 1.65
RPP40-205ENST00000479782 PEG3Q9GZU2 1588 aa25.32■■□□□ 1.64
RPP40-205ENST00000479782 WIZO95785 1651 aa25.3■■□□□ 1.64
RPP40-205ENST00000479782 SMARCA2P51531 1590 aa25.26■■□□□ 1.63
RPP40-205ENST00000479782 ATAD2BQ9ULI0 1458 aa25.21■■□□□ 1.63
RPP40-205ENST00000479782 CC2D2AQ9P2K1 1620 aa25.19■■□□□ 1.62
RPP40-205ENST00000479782 NCAPD3P42695 1498 aa25.1■■□□□ 1.61
RPP40-205ENST00000479782 TOP2AP11388 1531 aaKnown RBP25.09■■□□□ 1.61
RPP40-205ENST00000479782 HMGXB3Q12766 1538 aa25.08■■□□□ 1.61
RPP40-205ENST00000479782 BAZ1BQ9UIG0 1483 aaKnown RBP25.06■■□□□ 1.6
RPP40-205ENST00000479782 DNAJC5BQ9UF47 199 aa24.77■■□□□ 1.56
RPP40-205ENST00000479782 CCDC88BA6NC98 1476 aa24.76■■□□□ 1.55
RPP40-205ENST00000479782 AEBP2Q6ZN18 517 aaPredicted RBP24.57■■□□□ 1.52
RPP40-205ENST00000479782 CFTRP13569 1480 aa24.42■■□□□ 1.5
RPP40-205ENST00000479782 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
RPP40-205ENST00000479782 PRDM2Q13029 1718 aa24.37■■□□□ 1.49
RPP40-205ENST00000479782 LAMC3Q9Y6N6 1575 aa24.36■■□□□ 1.49
RPP40-205ENST00000479782 NESP48681 1621 aa24.24■■□□□ 1.47
RPP40-205ENST00000479782 PDS5BQ9NTI5 1447 aa24.13■■□□□ 1.45
RPP40-205ENST00000479782 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
RPP40-205ENST00000479782 CHIC1Q5VXU3 224 aa24.08■■□□□ 1.45
RPP40-205ENST00000479782 ABCC8Q09428 1581 aa24.08■■□□□ 1.44
RPP40-205ENST00000479782 CEP164Q9UPV0 1460 aa24.04■■□□□ 1.44
RPP40-205ENST00000479782 KIF21AQ7Z4S6 1674 aa24.04■■□□□ 1.44
RPP40-205ENST00000479782 WRNQ14191 1432 aaPredicted RBP eCLIP24.02■■□□□ 1.44
RPP40-205ENST00000479782 BIVM-ERCC5R4GMW8 1640 aa23.93■■□□□ 1.42
RPP40-205ENST00000479782 SYNJ1O43426 1573 aa23.93■■□□□ 1.42
RPP40-205ENST00000479782 TOP2BQ02880 1626 aa23.92■■□□□ 1.42
RPP40-205ENST00000479782 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
RPP40-205ENST00000479782 CUX1P39880 1505 aa23.9■■□□□ 1.42
RPP40-205ENST00000479782 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
RPP40-205ENST00000479782 DNMBPQ6XZF7 1577 aa23.88■■□□□ 1.41
RPP40-205ENST00000479782 MRC2Q9UBG0 1479 aa23.85■■□□□ 1.41
RPP40-205ENST00000479782 URB2Q14146 1524 aaKnown RBP23.83■■□□□ 1.41
RPP40-205ENST00000479782 TOPBP1Q92547 1522 aa23.82■■□□□ 1.4
RPP40-205ENST00000479782 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
RPP40-205ENST00000479782 WDR62O43379 1518 aa23.76■■□□□ 1.39
RPP40-205ENST00000479782 FGD5Q6ZNL6 1462 aa23.71■■□□□ 1.39
RPP40-205ENST00000479782 POLA1P09884 1462 aaPredicted RBP23.67■■□□□ 1.38
RPP40-205ENST00000479782 SOGA1O94964 1423 aa23.57■■□□□ 1.36
RPP40-205ENST00000479782 WDR97A6NE52 1622 aa23.54■■□□□ 1.36
RPP40-205ENST00000479782 EEA1Q15075 1411 aa23.53■■□□□ 1.36
RPP40-205ENST00000479782 CUX2O14529 1486 aa23.53■■□□□ 1.36
RPP40-205ENST00000479782 ABCA10Q8WWZ4 1543 aa23.53■■□□□ 1.36
RPP40-205ENST00000479782 TARBP1Q13395 1621 aaKnown RBP23.52■■□□□ 1.36
RPP40-205ENST00000479782 RAD54L2Q9Y4B4 1467 aa23.52■■□□□ 1.36
RPP40-205ENST00000479782 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
RPP40-205ENST00000479782 KIF27Q86VH2 1401 aa23.46■■□□□ 1.35
RPP40-205ENST00000479782 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
RPP40-205ENST00000479782 ABCA5Q8WWZ7 1642 aa23.39■■□□□ 1.33
RPP40-205ENST00000479782 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
RPP40-205ENST00000479782 GAPVD1Q14C86 1478 aa23.32■■□□□ 1.32
RPP40-205ENST00000479782 CSRNP3Q8WYN3 585 aa23.32■■□□□ 1.32
RPP40-205ENST00000479782 TDRD9Q8NDG6 1382 aaKnown RBP23.31■■□□□ 1.32
RPP40-205ENST00000479782 ZNF608Q9ULD9 1512 aaPredicted RBP23.29■■□□□ 1.32
RPP40-205ENST00000479782 EIF4G3O43432 1585 aaKnown RBP23.29■■□□□ 1.32
RPP40-205ENST00000479782 ERICH3Q5RHP9 1530 aa23.28■■□□□ 1.32
RPP40-205ENST00000479782 PBRM1Q86U86 1689 aa23.28■■□□□ 1.32
RPP40-205ENST00000479782 AQRO60306 1485 aaKnown RBP eCLIP23.25■■□□□ 1.31
RPP40-205ENST00000479782 IGF1RP08069 1367 aa23.25■■□□□ 1.31
RPP40-205ENST00000479782 KIF21BO75037 1637 aa23.23■■□□□ 1.31
RPP40-205ENST00000479782 CUL7Q14999 1698 aa23.23■■□□□ 1.31
RPP40-205ENST00000479782 GRIN2BQ13224 1484 aa23.23■■□□□ 1.31
RPP40-205ENST00000479782 PRXQ9BXM0 1461 aa23.19■■□□□ 1.3
RPP40-205ENST00000479782 CARMIL1Q5VZK9 1371 aa23.14■■□□□ 1.29
RPP40-205ENST00000479782 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
RPP40-205ENST00000479782 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
RPP40-205ENST00000479782 RAPGEF2Q9Y4G8 1499 aa23.11■■□□□ 1.29
RPP40-205ENST00000479782 ADAMTS12P58397 1594 aa23.1■■□□□ 1.29
RPP40-205ENST00000479782 SNAPC4Q5SXM2 1469 aa23.08■■□□□ 1.29
RPP40-205ENST00000479782 FHAD1B1AJZ9 1412 aa23.08■■□□□ 1.28
RPP40-205ENST00000479782 LOC105371045A0A1W2PR82 267 aa23.05■■□□□ 1.28
RPP40-205ENST00000479782 SYNJ2O15056 1496 aa22.99■■□□□ 1.27
RPP40-205ENST00000479782 EHMT2Q96KQ7 1210 aa22.98■■□□□ 1.27
RPP40-205ENST00000479782 TNIKQ9UKE5 1360 aa22.96■■□□□ 1.27
RPP40-205ENST00000479782 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
RPP40-205ENST00000479782 GRIN2AQ12879 1464 aa22.93■■□□□ 1.26
RPP40-205ENST00000479782 CTTNBP2Q8WZ74 1663 aa22.9■■□□□ 1.26
RPP40-205ENST00000479782 CHMP7Q8WUX9 453 aaPredicted RBP22.89■■□□□ 1.25
RPP40-205ENST00000479782 CHD1O14646 1710 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms