RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 AEBP2Q6ZN18 517 aaPredicted RBP26.96■■□□□ 1.91
GPNMB-211ENST00000479625 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
GPNMB-211ENST00000479625 NISCHQ9Y2I1 1504 aa25.11■■□□□ 1.61
GPNMB-211ENST00000479625 ABCC9O60706 1549 aa23.13■■□□□ 1.29
GPNMB-211ENST00000479625 SENP3Q9H4L4 574 aaPredicted RBP22.95■■□□□ 1.26
GPNMB-211ENST00000479625 CCDC180Q9P1Z9 1646 aa22.81■■□□□ 1.24
GPNMB-211ENST00000479625 PHF23Q9BUL5 403 aaPredicted RBP22.68■■□□□ 1.22
GPNMB-211ENST00000479625 DNAJC5BQ9UF47 199 aa21.97■■□□□ 1.11
GPNMB-211ENST00000479625 RB1CC1Q8TDY2 1594 aa21.83■■□□□ 1.09
GPNMB-211ENST00000479625 NACADO15069 1562 aa21.55■■□□□ 1.04
GPNMB-211ENST00000479625 UNC13AQ9UPW8 1703 aa21.54■■□□□ 1.04
GPNMB-211ENST00000479625 PABPN1Q86U42 306 aaKnown RBP eCLIP21.38■■□□□ 1.01
GPNMB-211ENST00000479625 FOXD1Q16676 465 aa21.37■■□□□ 1.01
GPNMB-211ENST00000479625 BICRAQ9NZM4 1560 aa21.27■■□□□ 1
GPNMB-211ENST00000479625 DCAF8L2P0C7V8 631 aa21.25■□□□□ 0.99
GPNMB-211ENST00000479625 MYO15BQ96JP2 1530 aa21.07■□□□□ 0.96
GPNMB-211ENST00000479625 CC2D2AQ9P2K1 1620 aa20.91■□□□□ 0.94
GPNMB-211ENST00000479625 CECR2Q9BXF3 1484 aa20.83■□□□□ 0.93
GPNMB-211ENST00000479625 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
GPNMB-211ENST00000479625 SCRIBQ14160 1630 aa20.78■□□□□ 0.92
GPNMB-211ENST00000479625 EIF4G1Q04637 1599 aaKnown RBP20.76■□□□□ 0.91
GPNMB-211ENST00000479625 ZCCHC6Q5VYS8 1495 aaKnown RBP20.75■□□□□ 0.91
GPNMB-211ENST00000479625 PLPPR3Q6T4P5 718 aa20.72■□□□□ 0.91
GPNMB-211ENST00000479625 DCAF1Q9Y4B6 1507 aa20.68■□□□□ 0.9
GPNMB-211ENST00000479625 DNAJC5Q9H3Z4 198 aa20.39■□□□□ 0.85
GPNMB-211ENST00000479625 PPP6R1Q9UPN7 881 aa20.14■□□□□ 0.81
GPNMB-211ENST00000479625 ADRA2BP18089 450 aa20.13■□□□□ 0.81
GPNMB-211ENST00000479625 PIAS4Q8N2W9 510 aaPredicted RBP20.09■□□□□ 0.81
GPNMB-211ENST00000479625 CUX2O14529 1486 aa20.04■□□□□ 0.8
GPNMB-211ENST00000479625 ERCC6Q03468 1493 aa19.95■□□□□ 0.78
GPNMB-211ENST00000479625 MSH5O43196 834 aa19.91■□□□□ 0.78
GPNMB-211ENST00000479625 NCAPD3P42695 1498 aa19.85■□□□□ 0.77
GPNMB-211ENST00000479625 NESP48681 1621 aa19.78■□□□□ 0.76
GPNMB-211ENST00000479625 ATAD2BQ9ULI0 1458 aa19.77■□□□□ 0.76
GPNMB-211ENST00000479625 SMARCA4P51532 1647 aa19.75■□□□□ 0.75
GPNMB-211ENST00000479625 HMGXB3Q12766 1538 aa19.75■□□□□ 0.75
GPNMB-211ENST00000479625 THOC2Q8NI27 1593 aaKnown RBP19.73■□□□□ 0.75
GPNMB-211ENST00000479625 SMARCA2P51531 1590 aa19.71■□□□□ 0.75
GPNMB-211ENST00000479625 KIF21AQ7Z4S6 1674 aa19.62■□□□□ 0.73
GPNMB-211ENST00000479625 BAZ1BQ9UIG0 1483 aaKnown RBP19.58■□□□□ 0.72
GPNMB-211ENST00000479625 LAMC3Q9Y6N6 1575 aa19.55■□□□□ 0.72
GPNMB-211ENST00000479625 BAZ1AQ9NRL2 1556 aaPredicted RBP19.52■□□□□ 0.71
GPNMB-211ENST00000479625 PEG3Q9GZU2 1588 aa19.51■□□□□ 0.71
GPNMB-211ENST00000479625 TRIM41Q8WV44 630 aa19.4■□□□□ 0.7
GPNMB-211ENST00000479625 MROH2BQ7Z745 1585 aa19.38■□□□□ 0.69
GPNMB-211ENST00000479625 PDS5BQ9NTI5 1447 aa19.34■□□□□ 0.69
GPNMB-211ENST00000479625 WDR62O43379 1518 aa19.29■□□□□ 0.68
GPNMB-211ENST00000479625 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
GPNMB-211ENST00000479625 CADPSQ9ULU8 1353 aa19.2■□□□□ 0.66
GPNMB-211ENST00000479625 WIZO95785 1651 aa19.2■□□□□ 0.66
GPNMB-211ENST00000479625 CEP164Q9UPV0 1460 aa19.13■□□□□ 0.65
GPNMB-211ENST00000479625 POTEDQ86YR6 584 aa19.08■□□□□ 0.64
GPNMB-211ENST00000479625 FANCD2Q9BXW9 1451 aa19.06■□□□□ 0.64
GPNMB-211ENST00000479625 RIMBP3CA6NJZ7 1639 aa18.97■□□□□ 0.63
GPNMB-211ENST00000479625 RIMBP3BA6NNM3 1639 aa18.97■□□□□ 0.63
GPNMB-211ENST00000479625 RIMBP3Q9UFD9 1639 aa18.97■□□□□ 0.63
GPNMB-211ENST00000479625 URB2Q14146 1524 aaKnown RBP18.97■□□□□ 0.63
GPNMB-211ENST00000479625 PRDM2Q13029 1718 aa18.95■□□□□ 0.62
GPNMB-211ENST00000479625 CFTRP13569 1480 aa18.95■□□□□ 0.62
GPNMB-211ENST00000479625 OSCARQ8IYS5 282 aa18.93■□□□□ 0.62
GPNMB-211ENST00000479625 TOP2AP11388 1531 aaKnown RBP18.86■□□□□ 0.61
GPNMB-211ENST00000479625 ARHGEF11O15085 1522 aa18.81■□□□□ 0.6
GPNMB-211ENST00000479625 ZNF608Q9ULD9 1512 aaPredicted RBP18.79■□□□□ 0.6
GPNMB-211ENST00000479625 RSF1Q96T23 1441 aaPredicted RBP18.76■□□□□ 0.59
GPNMB-211ENST00000479625 EIF4G3O43432 1585 aaKnown RBP18.76■□□□□ 0.59
GPNMB-211ENST00000479625 CHD1O14646 1710 aa18.74■□□□□ 0.59
GPNMB-211ENST00000479625 IFT140Q96RY7 1462 aa18.72■□□□□ 0.59
GPNMB-211ENST00000479625 TOPBP1Q92547 1522 aa18.68■□□□□ 0.58
GPNMB-211ENST00000479625 TARBP1Q13395 1621 aaKnown RBP18.6■□□□□ 0.57
GPNMB-211ENST00000479625 DNMBPQ6XZF7 1577 aa18.6■□□□□ 0.57
GPNMB-211ENST00000479625 CCDC88BA6NC98 1476 aa18.6■□□□□ 0.57
GPNMB-211ENST00000479625 ARAP1Q96P48 1450 aa18.6■□□□□ 0.57
GPNMB-211ENST00000479625 CYB5RLQ6IPT4 315 aa18.57■□□□□ 0.56
GPNMB-211ENST00000479625 AQRO60306 1485 aaKnown RBP eCLIP18.53■□□□□ 0.56
GPNMB-211ENST00000479625 ABCC8Q09428 1581 aa18.52■□□□□ 0.56
GPNMB-211ENST00000479625 TRHP20396 242 aaPredicted RBP18.5■□□□□ 0.55
GPNMB-211ENST00000479625 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.54
GPNMB-211ENST00000479625 FBLN2P98095 1184 aa18.42■□□□□ 0.54
GPNMB-211ENST00000479625 CLASP1Q7Z460 1538 aa18.42■□□□□ 0.54
GPNMB-211ENST00000479625 MAPK8IP2Q13387 824 aaPredicted RBP18.41■□□□□ 0.54
GPNMB-211ENST00000479625 RAD54L2Q9Y4B4 1467 aa18.4■□□□□ 0.54
GPNMB-211ENST00000479625 SNAPC4Q5SXM2 1469 aa18.38■□□□□ 0.53
GPNMB-211ENST00000479625 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
GPNMB-211ENST00000479625 SYNJ1O43426 1573 aa18.34■□□□□ 0.53
GPNMB-211ENST00000479625 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
GPNMB-211ENST00000479625 TDRD9Q8NDG6 1382 aaKnown RBP18.32■□□□□ 0.52
GPNMB-211ENST00000479625 PBRM1Q86U86 1689 aa18.31■□□□□ 0.52
GPNMB-211ENST00000479625 FGD5Q6ZNL6 1462 aa18.3■□□□□ 0.52
GPNMB-211ENST00000479625 SOGA1O94964 1423 aa18.29■□□□□ 0.52
GPNMB-211ENST00000479625 MAGI1Q96QZ7 1491 aaPredicted RBP18.26■□□□□ 0.51
GPNMB-211ENST00000479625 CUX1P39880 1505 aa18.24■□□□□ 0.51
GPNMB-211ENST00000479625 DMRT2Q9Y5R5 561 aa18.22■□□□□ 0.51
GPNMB-211ENST00000479625 SYNJ2O15056 1496 aa18.2■□□□□ 0.5
GPNMB-211ENST00000479625 GRIN2BQ13224 1484 aa18.2■□□□□ 0.5
GPNMB-211ENST00000479625 PPP4R3CPQ6ZMV5 832 aa18.2■□□□□ 0.5
GPNMB-211ENST00000479625 CHMP7Q8WUX9 453 aaPredicted RBP18.18■□□□□ 0.5
GPNMB-211ENST00000479625 GAPVD1Q14C86 1478 aa18.18■□□□□ 0.5
GPNMB-211ENST00000479625 ERCC6L2Q5T890 1561 aa18.15■□□□□ 0.5
GPNMB-211ENST00000479625 ABCA5Q8WWZ7 1642 aa18.15■□□□□ 0.5
GPNMB-211ENST00000479625 KIF13AQ9H1H9 1805 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms