RNA–Protein interactions for RNA: ENST00000479458.1

HMGCL-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 3

Gene HMGCL, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-205ENST00000479458 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
HMGCL-205ENST00000479458 AEBP2Q6ZN18 517 aaPredicted RBP18.79■□□□□ 0.6
HMGCL-205ENST00000479458 CHIC1Q5VXU3 224 aa18.4■□□□□ 0.54
HMGCL-205ENST00000479458 ABCC9O60706 1549 aa18.01■□□□□ 0.47
HMGCL-205ENST00000479458 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.4
HMGCL-205ENST00000479458 DNAJC5BQ9UF47 199 aa17.49■□□□□ 0.39
HMGCL-205ENST00000479458 RB1CC1Q8TDY2 1594 aa16.99■□□□□ 0.31
HMGCL-205ENST00000479458 NACADO15069 1562 aa16.77■□□□□ 0.27
HMGCL-205ENST00000479458 DNAJC5Q9H3Z4 198 aa16.62■□□□□ 0.25
HMGCL-205ENST00000479458 PABPN1Q86U42 306 aaKnown RBP eCLIP16.61■□□□□ 0.25
HMGCL-205ENST00000479458 UNC13AQ9UPW8 1703 aa16.59■□□□□ 0.25
HMGCL-205ENST00000479458 BICRAQ9NZM4 1560 aa16.51■□□□□ 0.23
HMGCL-205ENST00000479458 MYO15BQ96JP2 1530 aa16.43■□□□□ 0.22
HMGCL-205ENST00000479458 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
HMGCL-205ENST00000479458 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
HMGCL-205ENST00000479458 CC2D2AQ9P2K1 1620 aa16.31■□□□□ 0.2
HMGCL-205ENST00000479458 DCAF8L2P0C7V8 631 aa16.25■□□□□ 0.19
HMGCL-205ENST00000479458 PHF23Q9BUL5 403 aaPredicted RBP16.2■□□□□ 0.18
HMGCL-205ENST00000479458 EIF4G1Q04637 1599 aaKnown RBP16.14■□□□□ 0.17
HMGCL-205ENST00000479458 CUX2O14529 1486 aa15.94■□□□□ 0.14
HMGCL-205ENST00000479458 DCAF1Q9Y4B6 1507 aa15.94■□□□□ 0.14
HMGCL-205ENST00000479458 SENP3Q9H4L4 574 aaPredicted RBP15.91■□□□□ 0.14
HMGCL-205ENST00000479458 SCRIBQ14160 1630 aa15.79■□□□□ 0.12
HMGCL-205ENST00000479458 ZCCHC6Q5VYS8 1495 aaKnown RBP15.78■□□□□ 0.12
HMGCL-205ENST00000479458 ERCC6Q03468 1493 aa15.62■□□□□ 0.09
HMGCL-205ENST00000479458 NCAPD3P42695 1498 aa15.48■□□□□ 0.07
HMGCL-205ENST00000479458 TRIM41Q8WV44 630 aa15.43■□□□□ 0.06
HMGCL-205ENST00000479458 THOC2Q8NI27 1593 aaKnown RBP15.36■□□□□ 0.05
HMGCL-205ENST00000479458 HMGXB3Q12766 1538 aa15.31■□□□□ 0.04
HMGCL-205ENST00000479458 NESP48681 1621 aa15.29■□□□□ 0.04
HMGCL-205ENST00000479458 ATAD2BQ9ULI0 1458 aa15.29■□□□□ 0.04
HMGCL-205ENST00000479458 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
HMGCL-205ENST00000479458 LAMC3Q9Y6N6 1575 aa15.22■□□□□ 0.03
HMGCL-205ENST00000479458 PDS5BQ9NTI5 1447 aa15.13■□□□□ 0.01
HMGCL-205ENST00000479458 KIF21AQ7Z4S6 1674 aa15.12■□□□□ 0.01
HMGCL-205ENST00000479458 SMARCA4P51532 1647 aa15.1■□□□□ 0.01
HMGCL-205ENST00000479458 BAZ1BQ9UIG0 1483 aaKnown RBP15.07■□□□□ 0
HMGCL-205ENST00000479458 PEG3Q9GZU2 1588 aa15.07■□□□□ 0
HMGCL-205ENST00000479458 BAZ1AQ9NRL2 1556 aaPredicted RBP15.05■□□□□ -0
HMGCL-205ENST00000479458 OSCARQ8IYS5 282 aa15.04■□□□□ -0
HMGCL-205ENST00000479458 WDR62O43379 1518 aa15.03■□□□□ -0
HMGCL-205ENST00000479458 MRC2Q9UBG0 1479 aa15.01□□□□□ -0.01
HMGCL-205ENST00000479458 PLPPR3Q6T4P5 718 aa14.95□□□□□ -0.02
HMGCL-205ENST00000479458 CADPSQ9ULU8 1353 aa14.94□□□□□ -0.02
HMGCL-205ENST00000479458 RIMBP3CA6NJZ7 1639 aa14.89□□□□□ -0.03
HMGCL-205ENST00000479458 RIMBP3BA6NNM3 1639 aa14.89□□□□□ -0.03
HMGCL-205ENST00000479458 RIMBP3Q9UFD9 1639 aa14.89□□□□□ -0.03
HMGCL-205ENST00000479458 CEP164Q9UPV0 1460 aa14.81□□□□□ -0.04
HMGCL-205ENST00000479458 ARHGEF11O15085 1522 aa14.79□□□□□ -0.04
HMGCL-205ENST00000479458 FOXD1Q16676 465 aa14.78□□□□□ -0.04
HMGCL-205ENST00000479458 FANCD2Q9BXW9 1451 aa14.73□□□□□ -0.05
HMGCL-205ENST00000479458 MROH2BQ7Z745 1585 aa14.73□□□□□ -0.05
HMGCL-205ENST00000479458 CFTRP13569 1480 aa14.65□□□□□ -0.06
HMGCL-205ENST00000479458 CYB5RLQ6IPT4 315 aa14.65□□□□□ -0.06
HMGCL-205ENST00000479458 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
HMGCL-205ENST00000479458 URB2Q14146 1524 aaKnown RBP14.64□□□□□ -0.07
HMGCL-205ENST00000479458 ARAP1Q96P48 1450 aa14.59□□□□□ -0.07
HMGCL-205ENST00000479458 IFT140Q96RY7 1462 aa14.57□□□□□ -0.08
HMGCL-205ENST00000479458 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
HMGCL-205ENST00000479458 ZNF608Q9ULD9 1512 aaPredicted RBP14.53□□□□□ -0.08
HMGCL-205ENST00000479458 WIZO95785 1651 aa14.5□□□□□ -0.09
HMGCL-205ENST00000479458 PRDM2Q13029 1718 aa14.47□□□□□ -0.09
HMGCL-205ENST00000479458 CHD1O14646 1710 aa14.45□□□□□ -0.1
HMGCL-205ENST00000479458 EIF4G3O43432 1585 aaKnown RBP14.45□□□□□ -0.1
HMGCL-205ENST00000479458 ABCC8Q09428 1581 aa14.41□□□□□ -0.1
HMGCL-205ENST00000479458 TOPBP1Q92547 1522 aa14.39□□□□□ -0.11
HMGCL-205ENST00000479458 TARBP1Q13395 1621 aaKnown RBP14.33□□□□□ -0.11
HMGCL-205ENST00000479458 TOP2AP11388 1531 aaKnown RBP14.33□□□□□ -0.12
HMGCL-205ENST00000479458 CLASP1Q7Z460 1538 aa14.33□□□□□ -0.12
HMGCL-205ENST00000479458 AQRO60306 1485 aaKnown RBP eCLIP14.31□□□□□ -0.12
HMGCL-205ENST00000479458 DNMBPQ6XZF7 1577 aa14.3□□□□□ -0.12
HMGCL-205ENST00000479458 PPP6R1Q9UPN7 881 aa14.27□□□□□ -0.13
HMGCL-205ENST00000479458 FBLN2P98095 1184 aa14.26□□□□□ -0.13
HMGCL-205ENST00000479458 WDR97A6NE52 1622 aa14.25□□□□□ -0.13
HMGCL-205ENST00000479458 SYNJ1O43426 1573 aa14.25□□□□□ -0.13
HMGCL-205ENST00000479458 ADRA2BP18089 450 aa14.24□□□□□ -0.13
HMGCL-205ENST00000479458 ILDR1Q86SU0 546 aaPredicted RBP14.2□□□□□ -0.14
HMGCL-205ENST00000479458 POLA1P09884 1462 aaPredicted RBP14.19□□□□□ -0.14
HMGCL-205ENST00000479458 GAPVD1Q14C86 1478 aa14.18□□□□□ -0.14
HMGCL-205ENST00000479458 MAGI1Q96QZ7 1491 aaPredicted RBP14.18□□□□□ -0.14
HMGCL-205ENST00000479458 SNAPC4Q5SXM2 1469 aa14.16□□□□□ -0.14
HMGCL-205ENST00000479458 CCDC88BA6NC98 1476 aa14.14□□□□□ -0.15
HMGCL-205ENST00000479458 CHMP7Q8WUX9 453 aaPredicted RBP14.14□□□□□ -0.15
HMGCL-205ENST00000479458 SYNJ2O15056 1496 aa14.12□□□□□ -0.15
HMGCL-205ENST00000479458 TDRD9Q8NDG6 1382 aaKnown RBP14.11□□□□□ -0.15
HMGCL-205ENST00000479458 SOGA1O94964 1423 aa14.1□□□□□ -0.15
HMGCL-205ENST00000479458 GRIN2BQ13224 1484 aa14.09□□□□□ -0.15
HMGCL-205ENST00000479458 RAD54L2Q9Y4B4 1467 aa14.09□□□□□ -0.15
HMGCL-205ENST00000479458 KIF13AQ9H1H9 1805 aa14.08□□□□□ -0.15
HMGCL-205ENST00000479458 KDM4FA0A1W2PPD8 638 aa14.01□□□□□ -0.17
HMGCL-205ENST00000479458 FGD5Q6ZNL6 1462 aa13.99□□□□□ -0.17
HMGCL-205ENST00000479458 PBRM1Q86U86 1689 aa13.96□□□□□ -0.17
HMGCL-205ENST00000479458 ERCC6L2Q5T890 1561 aa13.96□□□□□ -0.18
HMGCL-205ENST00000479458 SHROOM2Q13796 1616 aa13.94□□□□□ -0.18
HMGCL-205ENST00000479458 ABCC10Q5T3U5 1492 aa13.93□□□□□ -0.18
HMGCL-205ENST00000479458 CEP170Q5SW79 1584 aa13.93□□□□□ -0.18
HMGCL-205ENST00000479458 NUP160Q12769 1436 aa13.91□□□□□ -0.18
HMGCL-205ENST00000479458 PIAS4Q8N2W9 510 aaPredicted RBP13.91□□□□□ -0.18
HMGCL-205ENST00000479458 GRIN2AQ12879 1464 aa13.89□□□□□ -0.19
HMGCL-205ENST00000479458 ABCA5Q8WWZ7 1642 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms