RNA–Protein interactions for RNA: ENST00000478999.1

VPS45-208, Transcript of vacuolar protein sorting 45 homolog, humanhuman

TSL 2

Gene VPS45, Length 468 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS45-208ENST00000478999 NISCHQ9Y2I1 1504 aa19.95■□□□□ 0.78
VPS45-208ENST00000478999 ABCC9O60706 1549 aa18.56■□□□□ 0.56
VPS45-208ENST00000478999 CCDC180Q9P1Z9 1646 aa18.17■□□□□ 0.5
VPS45-208ENST00000478999 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
VPS45-208ENST00000478999 RB1CC1Q8TDY2 1594 aa17.46■□□□□ 0.39
VPS45-208ENST00000478999 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
VPS45-208ENST00000478999 NACADO15069 1562 aa17.22■□□□□ 0.35
VPS45-208ENST00000478999 PABPN1Q86U42 306 aaKnown RBP eCLIP17.16■□□□□ 0.34
VPS45-208ENST00000478999 BICRAQ9NZM4 1560 aa17.03■□□□□ 0.32
VPS45-208ENST00000478999 DCAF8L2P0C7V8 631 aa16.94■□□□□ 0.3
VPS45-208ENST00000478999 MYO15BQ96JP2 1530 aa16.81■□□□□ 0.28
VPS45-208ENST00000478999 CC2D2AQ9P2K1 1620 aa16.79■□□□□ 0.28
VPS45-208ENST00000478999 CECR2Q9BXF3 1484 aa16.74■□□□□ 0.27
VPS45-208ENST00000478999 SHROOM4Q9ULL8 1493 aa16.66■□□□□ 0.26
VPS45-208ENST00000478999 DNAJC5Q9H3Z4 198 aa16.65■□□□□ 0.26
VPS45-208ENST00000478999 EIF4G1Q04637 1599 aaKnown RBP16.62■□□□□ 0.25
VPS45-208ENST00000478999 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
VPS45-208ENST00000478999 ZCCHC6Q5VYS8 1495 aaKnown RBP16.44■□□□□ 0.22
VPS45-208ENST00000478999 DCAF1Q9Y4B6 1507 aa16.44■□□□□ 0.22
VPS45-208ENST00000478999 CUX2O14529 1486 aa16.17■□□□□ 0.18
VPS45-208ENST00000478999 AEBP2Q6ZN18 517 aaPredicted RBP16.16■□□□□ 0.18
VPS45-208ENST00000478999 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
VPS45-208ENST00000478999 NCAPD3P42695 1498 aa15.88■□□□□ 0.13
VPS45-208ENST00000478999 NESP48681 1621 aa15.83■□□□□ 0.13
VPS45-208ENST00000478999 THOC2Q8NI27 1593 aaKnown RBP15.82■□□□□ 0.12
VPS45-208ENST00000478999 ATAD2BQ9ULI0 1458 aa15.78■□□□□ 0.12
VPS45-208ENST00000478999 HMGXB3Q12766 1538 aa15.76■□□□□ 0.11
VPS45-208ENST00000478999 TRIM41Q8WV44 630 aa15.74■□□□□ 0.11
VPS45-208ENST00000478999 SMARCA2P51531 1590 aa15.72■□□□□ 0.11
VPS45-208ENST00000478999 SMARCA4P51532 1647 aa15.71■□□□□ 0.11
VPS45-208ENST00000478999 KIF21AQ7Z4S6 1674 aa15.7■□□□□ 0.1
VPS45-208ENST00000478999 LAMC3Q9Y6N6 1575 aa15.64■□□□□ 0.09
VPS45-208ENST00000478999 BAZ1BQ9UIG0 1483 aaKnown RBP15.6■□□□□ 0.09
VPS45-208ENST00000478999 PEG3Q9GZU2 1588 aa15.53■□□□□ 0.08
VPS45-208ENST00000478999 BAZ1AQ9NRL2 1556 aaPredicted RBP15.5■□□□□ 0.07
VPS45-208ENST00000478999 PDS5BQ9NTI5 1447 aa15.5■□□□□ 0.07
VPS45-208ENST00000478999 WDR62O43379 1518 aa15.45■□□□□ 0.06
VPS45-208ENST00000478999 MRC2Q9UBG0 1479 aa15.43■□□□□ 0.06
VPS45-208ENST00000478999 MROH2BQ7Z745 1585 aa15.38■□□□□ 0.05
VPS45-208ENST00000478999 CADPSQ9ULU8 1353 aa15.36■□□□□ 0.05
VPS45-208ENST00000478999 OSCARQ8IYS5 282 aa15.29■□□□□ 0.04
VPS45-208ENST00000478999 CEP164Q9UPV0 1460 aa15.28■□□□□ 0.04
VPS45-208ENST00000478999 RIMBP3CA6NJZ7 1639 aa15.28■□□□□ 0.04
VPS45-208ENST00000478999 RIMBP3BA6NNM3 1639 aa15.28■□□□□ 0.04
VPS45-208ENST00000478999 RIMBP3Q9UFD9 1639 aa15.28■□□□□ 0.04
VPS45-208ENST00000478999 WIZO95785 1651 aa15.22■□□□□ 0.03
VPS45-208ENST00000478999 FANCD2Q9BXW9 1451 aa15.21■□□□□ 0.03
VPS45-208ENST00000478999 URB2Q14146 1524 aaKnown RBP15.15■□□□□ 0.02
VPS45-208ENST00000478999 ARHGEF11O15085 1522 aa15.14■□□□□ 0.01
VPS45-208ENST00000478999 CFTRP13569 1480 aa15.11■□□□□ 0.01
VPS45-208ENST00000478999 PRDM2Q13029 1718 aa15.08■□□□□ 0
VPS45-208ENST00000478999 CHIC1Q5VXU3 224 aa15.05■□□□□ -0
VPS45-208ENST00000478999 ZNF608Q9ULD9 1512 aaPredicted RBP15.03■□□□□ -0
VPS45-208ENST00000478999 CHD1O14646 1710 aa15□□□□□ -0.01
VPS45-208ENST00000478999 CYB5RLQ6IPT4 315 aa14.98□□□□□ -0.01
VPS45-208ENST00000478999 EIF4G3O43432 1585 aaKnown RBP14.97□□□□□ -0.01
VPS45-208ENST00000478999 ARAP1Q96P48 1450 aa14.96□□□□□ -0.01
VPS45-208ENST00000478999 IFT140Q96RY7 1462 aa14.96□□□□□ -0.01
VPS45-208ENST00000478999 TRHP20396 242 aaPredicted RBP14.95□□□□□ -0.02
VPS45-208ENST00000478999 TOP2AP11388 1531 aaKnown RBP14.94□□□□□ -0.02
VPS45-208ENST00000478999 TOPBP1Q92547 1522 aa14.89□□□□□ -0.03
VPS45-208ENST00000478999 RSF1Q96T23 1441 aaPredicted RBP14.85□□□□□ -0.03
VPS45-208ENST00000478999 TARBP1Q13395 1621 aaKnown RBP14.84□□□□□ -0.03
VPS45-208ENST00000478999 AQRO60306 1485 aaKnown RBP eCLIP14.82□□□□□ -0.047e-8■■■■□ 21.3
VPS45-208ENST00000478999 DNMBPQ6XZF7 1577 aa14.81□□□□□ -0.04
VPS45-208ENST00000478999 ABCC8Q09428 1581 aa14.77□□□□□ -0.04
VPS45-208ENST00000478999 CCDC88BA6NC98 1476 aa14.76□□□□□ -0.05
VPS45-208ENST00000478999 FBLN2P98095 1184 aa14.75□□□□□ -0.05
VPS45-208ENST00000478999 CLASP1Q7Z460 1538 aa14.75□□□□□ -0.05
VPS45-208ENST00000478999 POLA1P09884 1462 aaPredicted RBP14.71□□□□□ -0.05
VPS45-208ENST00000478999 SYNJ1O43426 1573 aa14.66□□□□□ -0.06
VPS45-208ENST00000478999 SNAPC4Q5SXM2 1469 aa14.66□□□□□ -0.06
VPS45-208ENST00000478999 RAD54L2Q9Y4B4 1467 aa14.66□□□□□ -0.06
VPS45-208ENST00000478999 TDRD9Q8NDG6 1382 aaKnown RBP14.62□□□□□ -0.07
VPS45-208ENST00000478999 WDR97A6NE52 1622 aa14.62□□□□□ -0.07
VPS45-208ENST00000478999 SOGA1O94964 1423 aa14.58□□□□□ -0.07
VPS45-208ENST00000478999 MAGI1Q96QZ7 1491 aaPredicted RBP14.58□□□□□ -0.08
VPS45-208ENST00000478999 GAPVD1Q14C86 1478 aa14.57□□□□□ -0.08
VPS45-208ENST00000478999 PBRM1Q86U86 1689 aa14.57□□□□□ -0.08
VPS45-208ENST00000478999 CHMP7Q8WUX9 453 aaPredicted RBP14.55□□□□□ -0.08
VPS45-208ENST00000478999 FGD5Q6ZNL6 1462 aa14.55□□□□□ -0.08
VPS45-208ENST00000478999 SYNJ2O15056 1496 aa14.54□□□□□ -0.08
VPS45-208ENST00000478999 GRIN2BQ13224 1484 aa14.53□□□□□ -0.08
VPS45-208ENST00000478999 KIF13AQ9H1H9 1805 aa14.52□□□□□ -0.08
VPS45-208ENST00000478999 ERCC6L2Q5T890 1561 aa14.51□□□□□ -0.09
VPS45-208ENST00000478999 CUX1P39880 1505 aa14.48□□□□□ -0.09
VPS45-208ENST00000478999 ABCA5Q8WWZ7 1642 aa14.43□□□□□ -0.1
VPS45-208ENST00000478999 CEP170Q5SW79 1584 aa14.41□□□□□ -0.1
VPS45-208ENST00000478999 SHROOM2Q13796 1616 aa14.38□□□□□ -0.11
VPS45-208ENST00000478999 GRIN2AQ12879 1464 aa14.37□□□□□ -0.11
VPS45-208ENST00000478999 ABCA10Q8WWZ4 1543 aa14.35□□□□□ -0.11
VPS45-208ENST00000478999 ADAMTS12P58397 1594 aa14.34□□□□□ -0.11
VPS45-208ENST00000478999 NUP160Q12769 1436 aa14.33□□□□□ -0.11
VPS45-208ENST00000478999 ILDR1Q86SU0 546 aaPredicted RBP14.31□□□□□ -0.12
VPS45-208ENST00000478999 SUPT5HO00267 1087 aaKnown RBP14.28□□□□□ -0.12
VPS45-208ENST00000478999 KDM4FA0A1W2PPD8 638 aa14.26□□□□□ -0.13
VPS45-208ENST00000478999 DIP2BQ9P265 1576 aa14.26□□□□□ -0.13
VPS45-208ENST00000478999 TSPOAP1O95153 1857 aa14.25□□□□□ -0.13
VPS45-208ENST00000478999 KDM6BO15054 1643 aa14.25□□□□□ -0.13
VPS45-208ENST00000478999 ABCC10Q5T3U5 1492 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms