RNA–Protein interactions for RNA: ENST00000478543.1

PDCD11-204, Transcript of programmed cell death 11, humanhuman

TSL 2

Gene PDCD11, Length 717 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD11-204ENST00000478543 NISCHQ9Y2I1 1504 aa27.62■■■□□ 2.01
PDCD11-204ENST00000478543 ABCC9O60706 1549 aa25.61■■□□□ 1.69
PDCD11-204ENST00000478543 CCDC180Q9P1Z9 1646 aa24.99■■□□□ 1.59
PDCD11-204ENST00000478543 DNAJC5BQ9UF47 199 aa24.62■■□□□ 1.53
PDCD11-204ENST00000478543 RB1CC1Q8TDY2 1594 aa24.03■■□□□ 1.44
PDCD11-204ENST00000478543 PABPN1Q86U42 306 aaKnown RBP eCLIP23.75■■□□□ 1.39
PDCD11-204ENST00000478543 NACADO15069 1562 aa23.74■■□□□ 1.39
PDCD11-204ENST00000478543 UNC13AQ9UPW8 1703 aa23.65■■□□□ 1.38
PDCD11-204ENST00000478543 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
PDCD11-204ENST00000478543 DCAF8L2P0C7V8 631 aa23.46■■□□□ 1.35
PDCD11-204ENST00000478543 MYO15BQ96JP2 1530 aa23.2■■□□□ 1.3
PDCD11-204ENST00000478543 CC2D2AQ9P2K1 1620 aa23.11■■□□□ 1.29
PDCD11-204ENST00000478543 CECR2Q9BXF3 1484 aa23.09■■□□□ 1.29
PDCD11-204ENST00000478543 SHROOM4Q9ULL8 1493 aa22.92■■□□□ 1.26
PDCD11-204ENST00000478543 EIF4G1Q04637 1599 aaKnown RBP22.92■■□□□ 1.26
PDCD11-204ENST00000478543 ZCCHC6Q5VYS8 1495 aaKnown RBP22.88■■□□□ 1.25
PDCD11-204ENST00000478543 DNAJC5Q9H3Z4 198 aa22.88■■□□□ 1.25
PDCD11-204ENST00000478543 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
PDCD11-204ENST00000478543 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
PDCD11-204ENST00000478543 CUX2O14529 1486 aa22.22■■□□□ 1.15
PDCD11-204ENST00000478543 ERCC6Q03468 1493 aa22.04■■□□□ 1.12
PDCD11-204ENST00000478543 NCAPD3P42695 1498 aa21.95■■□□□ 1.1
PDCD11-204ENST00000478543 NESP48681 1621 aa21.9■■□□□ 1.1
PDCD11-204ENST00000478543 ATAD2BQ9ULI0 1458 aa21.83■■□□□ 1.09
PDCD11-204ENST00000478543 THOC2Q8NI27 1593 aaKnown RBP21.78■■□□□ 1.08
PDCD11-204ENST00000478543 HMGXB3Q12766 1538 aa21.74■■□□□ 1.07
PDCD11-204ENST00000478543 SMARCA4P51532 1647 aa21.68■■□□□ 1.06
PDCD11-204ENST00000478543 SMARCA2P51531 1590 aa21.66■■□□□ 1.06
PDCD11-204ENST00000478543 TRIM41Q8WV44 630 aa21.65■■□□□ 1.06
PDCD11-204ENST00000478543 KIF21AQ7Z4S6 1674 aa21.58■■□□□ 1.05
PDCD11-204ENST00000478543 BAZ1BQ9UIG0 1483 aaKnown RBP21.54■■□□□ 1.04
PDCD11-204ENST00000478543 LAMC3Q9Y6N6 1575 aa21.53■■□□□ 1.04
PDCD11-204ENST00000478543 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
PDCD11-204ENST00000478543 BAZ1AQ9NRL2 1556 aaPredicted RBP21.42■■□□□ 1.02
PDCD11-204ENST00000478543 PDS5BQ9NTI5 1447 aa21.37■■□□□ 1.01
PDCD11-204ENST00000478543 MROH2BQ7Z745 1585 aa21.33■■□□□ 1.01
PDCD11-204ENST00000478543 WDR62O43379 1518 aa21.29■■□□□ 1
PDCD11-204ENST00000478543 MRC2Q9UBG0 1479 aa21.28■■□□□ 1
PDCD11-204ENST00000478543 CADPSQ9ULU8 1353 aa21.23■□□□□ 0.99
PDCD11-204ENST00000478543 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
PDCD11-204ENST00000478543 WIZO95785 1651 aa21.05■□□□□ 0.96
PDCD11-204ENST00000478543 OSCARQ8IYS5 282 aa21.05■□□□□ 0.96
PDCD11-204ENST00000478543 RSF1Q96T23 1441 aaPredicted RBP21.03■□□□□ 0.96
PDCD11-204ENST00000478543 FANCD2Q9BXW9 1451 aa21.02■□□□□ 0.96
PDCD11-204ENST00000478543 RIMBP3CA6NJZ7 1639 aa20.99■□□□□ 0.95
PDCD11-204ENST00000478543 RIMBP3BA6NNM3 1639 aa20.99■□□□□ 0.95
PDCD11-204ENST00000478543 RIMBP3Q9UFD9 1639 aa20.99■□□□□ 0.95
PDCD11-204ENST00000478543 SUPT5HO00267 1087 aaKnown RBP20.97■□□□□ 0.95
PDCD11-204ENST00000478543 URB2Q14146 1524 aaKnown RBP20.95■□□□□ 0.94
PDCD11-204ENST00000478543 CFTRP13569 1480 aa20.91■□□□□ 0.94
PDCD11-204ENST00000478543 ARHGEF11O15085 1522 aa20.85■□□□□ 0.93
PDCD11-204ENST00000478543 ZNF608Q9ULD9 1512 aaPredicted RBP20.8■□□□□ 0.92
PDCD11-204ENST00000478543 TOP2AP11388 1531 aaKnown RBP20.7■□□□□ 0.9
PDCD11-204ENST00000478543 CYB5RLQ6IPT4 315 aa20.67■□□□□ 0.9
PDCD11-204ENST00000478543 PRDM2Q13029 1718 aa20.65■□□□□ 0.9
PDCD11-204ENST00000478543 IFT140Q96RY7 1462 aa20.64■□□□□ 0.89
PDCD11-204ENST00000478543 ARAP1Q96P48 1450 aa20.63■□□□□ 0.89
PDCD11-204ENST00000478543 EIF4G3O43432 1585 aaKnown RBP20.63■□□□□ 0.89
PDCD11-204ENST00000478543 CHD1O14646 1710 aa20.59■□□□□ 0.89
PDCD11-204ENST00000478543 TOPBP1Q92547 1522 aa20.58■□□□□ 0.89
PDCD11-204ENST00000478543 TRHP20396 242 aaPredicted RBP20.56■□□□□ 0.88
PDCD11-204ENST00000478543 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.873e-7■■■□□ 16
PDCD11-204ENST00000478543 TARBP1Q13395 1621 aaKnown RBP20.49■□□□□ 0.87
PDCD11-204ENST00000478543 CCDC88BA6NC98 1476 aa20.47■□□□□ 0.87
PDCD11-204ENST00000478543 DNMBPQ6XZF7 1577 aa20.43■□□□□ 0.86
PDCD11-204ENST00000478543 FBLN2P98095 1184 aa20.37■□□□□ 0.85
PDCD11-204ENST00000478543 ABCC8Q09428 1581 aa20.36■□□□□ 0.85
PDCD11-204ENST00000478543 POLA1P09884 1462 aaPredicted RBP20.35■□□□□ 0.85
PDCD11-204ENST00000478543 CLASP1Q7Z460 1538 aa20.34■□□□□ 0.85
PDCD11-204ENST00000478543 RAD54L2Q9Y4B4 1467 aa20.31■□□□□ 0.84
PDCD11-204ENST00000478543 AEBP2Q6ZN18 517 aaPredicted RBP20.31■□□□□ 0.84
PDCD11-204ENST00000478543 SNAPC4Q5SXM2 1469 aa20.26■□□□□ 0.83
PDCD11-204ENST00000478543 TDRD9Q8NDG6 1382 aaKnown RBP20.26■□□□□ 0.83
PDCD11-204ENST00000478543 SOGA1O94964 1423 aa20.18■□□□□ 0.82
PDCD11-204ENST00000478543 SYNJ1O43426 1573 aa20.17■□□□□ 0.82
PDCD11-204ENST00000478543 FGD5Q6ZNL6 1462 aa20.13■□□□□ 0.81
PDCD11-204ENST00000478543 GAPVD1Q14C86 1478 aa20.11■□□□□ 0.81
PDCD11-204ENST00000478543 MAGI1Q96QZ7 1491 aaPredicted RBP20.11■□□□□ 0.81
PDCD11-204ENST00000478543 WDR97A6NE52 1622 aa20.1■□□□□ 0.81
PDCD11-204ENST00000478543 CHMP7Q8WUX9 453 aaPredicted RBP20.1■□□□□ 0.81
PDCD11-204ENST00000478543 SYNJ2O15056 1496 aa20.07■□□□□ 0.8
PDCD11-204ENST00000478543 CUX1P39880 1505 aa20.07■□□□□ 0.8
PDCD11-204ENST00000478543 ERCC6L2Q5T890 1561 aa20.06■□□□□ 0.8
PDCD11-204ENST00000478543 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
PDCD11-204ENST00000478543 PBRM1Q86U86 1689 aa20.03■□□□□ 0.8
PDCD11-204ENST00000478543 ABCA5Q8WWZ7 1642 aa19.91■□□□□ 0.78
PDCD11-204ENST00000478543 KIF13AQ9H1H9 1805 aa19.91■□□□□ 0.78
PDCD11-204ENST00000478543 CEP170Q5SW79 1584 aa19.88■□□□□ 0.77
PDCD11-204ENST00000478543 GRIN2AQ12879 1464 aa19.85■□□□□ 0.77
PDCD11-204ENST00000478543 ABCA10Q8WWZ4 1543 aa19.84■□□□□ 0.77
PDCD11-204ENST00000478543 CHIC1Q5VXU3 224 aa19.83■□□□□ 0.77
PDCD11-204ENST00000478543 WRNQ14191 1432 aaPredicted RBP eCLIP19.83■□□□□ 0.76
PDCD11-204ENST00000478543 SHROOM2Q13796 1616 aa19.82■□□□□ 0.76
PDCD11-204ENST00000478543 NUP160Q12769 1436 aa19.82■□□□□ 0.76
PDCD11-204ENST00000478543 ADAMTS12P58397 1594 aa19.8■□□□□ 0.76
PDCD11-204ENST00000478543 TOP2BQ02880 1626 aa19.72■□□□□ 0.75
PDCD11-204ENST00000478543 BIVM-ERCC5R4GMW8 1640 aa19.71■□□□□ 0.75
PDCD11-204ENST00000478543 KDM4FA0A1W2PPD8 638 aa19.69■□□□□ 0.74
PDCD11-204ENST00000478543 ILDR1Q86SU0 546 aaPredicted RBP19.65■□□□□ 0.74
PDCD11-204ENST00000478543 ABCC10Q5T3U5 1492 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms