RNA–Protein interactions for RNA: ENST00000478349.6

SMARCE1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 1,090 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-209ENST00000478349 NISCHQ9Y2I1 1504 aa35.82■■■■□ 3.32
SMARCE1-209ENST00000478349 CCDC180Q9P1Z9 1646 aa32.11■■■□□ 2.73
SMARCE1-209ENST00000478349 ABCC9O60706 1549 aa31.92■■■□□ 2.7
SMARCE1-209ENST00000478349 RB1CC1Q8TDY2 1594 aa30.54■■■□□ 2.48
SMARCE1-209ENST00000478349 NACADO15069 1562 aa30.37■■■□□ 2.45
SMARCE1-209ENST00000478349 DCAF8L2P0C7V8 631 aa30.17■■■□□ 2.42
SMARCE1-209ENST00000478349 MYO15BQ96JP2 1530 aa30.03■■■□□ 2.4
SMARCE1-209ENST00000478349 ZCCHC6Q5VYS8 1495 aaKnown RBP29.73■■■□□ 2.35
SMARCE1-209ENST00000478349 PABPN1Q86U42 306 aaKnown RBP eCLIP29.7■■■□□ 2.35
SMARCE1-209ENST00000478349 DNAJC5BQ9UF47 199 aa29.68■■■□□ 2.34
SMARCE1-209ENST00000478349 DCAF1Q9Y4B6 1507 aa29.67■■■□□ 2.34
SMARCE1-209ENST00000478349 UNC13AQ9UPW8 1703 aa29.59■■■□□ 2.33
SMARCE1-209ENST00000478349 BICRAQ9NZM4 1560 aa29.48■■■□□ 2.31
SMARCE1-209ENST00000478349 SHROOM4Q9ULL8 1493 aa29.39■■■□□ 2.3
SMARCE1-209ENST00000478349 SCRIBQ14160 1630 aa29.2■■■□□ 2.27
SMARCE1-209ENST00000478349 EIF4G1Q04637 1599 aaKnown RBP28.84■■■□□ 2.21
SMARCE1-209ENST00000478349 CC2D2AQ9P2K1 1620 aa28.83■■■□□ 2.21
SMARCE1-209ENST00000478349 CECR2Q9BXF3 1484 aa28.8■■■□□ 2.2
SMARCE1-209ENST00000478349 AEBP2Q6ZN18 517 aaPredicted RBP28.01■■■□□ 2.07
SMARCE1-209ENST00000478349 NCAPD3P42695 1498 aa28.01■■■□□ 2.07
SMARCE1-209ENST00000478349 SMARCA2P51531 1590 aa27.92■■■□□ 2.06
SMARCE1-209ENST00000478349 ATAD2BQ9ULI0 1458 aa27.9■■■□□ 2.06
SMARCE1-209ENST00000478349 SMARCA4P51532 1647 aa27.89■■■□□ 2.06
SMARCE1-209ENST00000478349 BAZ1AQ9NRL2 1556 aaPredicted RBP27.86■■■□□ 2.05
SMARCE1-209ENST00000478349 HMGXB3Q12766 1538 aa27.84■■■□□ 2.05
SMARCE1-209ENST00000478349 BAZ1BQ9UIG0 1483 aaKnown RBP27.7■■■□□ 2.03
SMARCE1-209ENST00000478349 ERCC6Q03468 1493 aa27.68■■■□□ 2.02
SMARCE1-209ENST00000478349 PEG3Q9GZU2 1588 aa27.65■■■□□ 2.02
SMARCE1-209ENST00000478349 CUX2O14529 1486 aa27.58■■■□□ 2.01
SMARCE1-209ENST00000478349 MROH2BQ7Z745 1585 aa27.53■■■□□ 2
SMARCE1-209ENST00000478349 NESP48681 1621 aa27.4■■□□□ 1.98
SMARCE1-209ENST00000478349 LAMC3Q9Y6N6 1575 aa27.37■■□□□ 1.97
SMARCE1-209ENST00000478349 DNAJC5Q9H3Z4 198 aa27.31■■□□□ 1.96
SMARCE1-209ENST00000478349 PDS5BQ9NTI5 1447 aa27.27■■□□□ 1.96
SMARCE1-209ENST00000478349 CADPSQ9ULU8 1353 aa27.17■■□□□ 1.94
SMARCE1-209ENST00000478349 WIZO95785 1651 aa27.17■■□□□ 1.94
SMARCE1-209ENST00000478349 THOC2Q8NI27 1593 aaKnown RBP27.15■■□□□ 1.94
SMARCE1-209ENST00000478349 RSF1Q96T23 1441 aaPredicted RBP27.06■■□□□ 1.92
SMARCE1-209ENST00000478349 KIF21AQ7Z4S6 1674 aa27.04■■□□□ 1.92
SMARCE1-209ENST00000478349 MRC2Q9UBG0 1479 aa26.98■■□□□ 1.91
SMARCE1-209ENST00000478349 TOP2AP11388 1531 aaKnown RBP26.97■■□□□ 1.91
SMARCE1-209ENST00000478349 CEP164Q9UPV0 1460 aa26.91■■□□□ 1.9
SMARCE1-209ENST00000478349 CFTRP13569 1480 aa26.87■■□□□ 1.89
SMARCE1-209ENST00000478349 WDR62O43379 1518 aa26.87■■□□□ 1.89
SMARCE1-209ENST00000478349 FANCD2Q9BXW9 1451 aa26.86■■□□□ 1.89
SMARCE1-209ENST00000478349 CHIC1Q5VXU3 224 aa26.71■■□□□ 1.87
SMARCE1-209ENST00000478349 CCDC88BA6NC98 1476 aa26.6■■□□□ 1.85
SMARCE1-209ENST00000478349 URB2Q14146 1524 aaKnown RBP26.55■■□□□ 1.84
SMARCE1-209ENST00000478349 PRDM2Q13029 1718 aa26.53■■□□□ 1.84
SMARCE1-209ENST00000478349 ABCC8Q09428 1581 aa26.41■■□□□ 1.82
SMARCE1-209ENST00000478349 IFT140Q96RY7 1462 aa26.37■■□□□ 1.81
SMARCE1-209ENST00000478349 TOPBP1Q92547 1522 aa26.33■■□□□ 1.81
SMARCE1-209ENST00000478349 OSCARQ8IYS5 282 aa26.32■■□□□ 1.8
SMARCE1-209ENST00000478349 DNMBPQ6XZF7 1577 aa26.28■■□□□ 1.8
SMARCE1-209ENST00000478349 ZNF608Q9ULD9 1512 aaPredicted RBP26.19■■□□□ 1.78
SMARCE1-209ENST00000478349 TRIM41Q8WV44 630 aa26.17■■□□□ 1.78
SMARCE1-209ENST00000478349 EIF4G3O43432 1585 aaKnown RBP26.1■■□□□ 1.77
SMARCE1-209ENST00000478349 POLA1P09884 1462 aaPredicted RBP26.07■■□□□ 1.76
SMARCE1-209ENST00000478349 TARBP1Q13395 1621 aaKnown RBP26.03■■□□□ 1.76
SMARCE1-209ENST00000478349 AQRO60306 1485 aaKnown RBP eCLIP25.98■■□□□ 1.755e-8■■■□□ 18.8
SMARCE1-209ENST00000478349 SOGA1O94964 1423 aa25.97■■□□□ 1.75
SMARCE1-209ENST00000478349 SUPT5HO00267 1087 aaKnown RBP25.96■■□□□ 1.75
SMARCE1-209ENST00000478349 WDR97A6NE52 1622 aa25.95■■□□□ 1.74
SMARCE1-209ENST00000478349 FGD5Q6ZNL6 1462 aa25.93■■□□□ 1.74
SMARCE1-209ENST00000478349 RAD54L2Q9Y4B4 1467 aa25.91■■□□□ 1.74
SMARCE1-209ENST00000478349 CUX1P39880 1505 aa25.88■■□□□ 1.73
SMARCE1-209ENST00000478349 TDRD9Q8NDG6 1382 aaKnown RBP25.87■■□□□ 1.73
SMARCE1-209ENST00000478349 FBLN2P98095 1184 aa25.87■■□□□ 1.73
SMARCE1-209ENST00000478349 RIMBP3CA6NJZ7 1639 aa25.85■■□□□ 1.73
SMARCE1-209ENST00000478349 RIMBP3BA6NNM3 1639 aa25.85■■□□□ 1.73
SMARCE1-209ENST00000478349 RIMBP3Q9UFD9 1639 aa25.85■■□□□ 1.73
SMARCE1-209ENST00000478349 ARHGEF11O15085 1522 aa25.85■■□□□ 1.73
SMARCE1-209ENST00000478349 CHD1O14646 1710 aa25.8■■□□□ 1.72
SMARCE1-209ENST00000478349 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
SMARCE1-209ENST00000478349 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
SMARCE1-209ENST00000478349 SNAPC4Q5SXM2 1469 aa25.78■■□□□ 1.72
SMARCE1-209ENST00000478349 CHMP7Q8WUX9 453 aaPredicted RBP25.73■■□□□ 1.71
SMARCE1-209ENST00000478349 ABCA10Q8WWZ4 1543 aa25.68■■□□□ 1.7
SMARCE1-209ENST00000478349 SYNJ2O15056 1496 aa25.67■■□□□ 1.7
SMARCE1-209ENST00000478349 GAPVD1Q14C86 1478 aa25.67■■□□□ 1.7
SMARCE1-209ENST00000478349 SYNJ1O43426 1573 aa25.67■■□□□ 1.7
SMARCE1-209ENST00000478349 WRNQ14191 1432 aaPredicted RBP eCLIP25.65■■□□□ 1.7
SMARCE1-209ENST00000478349 CYB5RLQ6IPT4 315 aa25.63■■□□□ 1.69
SMARCE1-209ENST00000478349 CLASP1Q7Z460 1538 aa25.58■■□□□ 1.69
SMARCE1-209ENST00000478349 ABCA5Q8WWZ7 1642 aa25.57■■□□□ 1.68
SMARCE1-209ENST00000478349 ARAP1Q96P48 1450 aa25.57■■□□□ 1.68
SMARCE1-209ENST00000478349 PBRM1Q86U86 1689 aa25.57■■□□□ 1.68
SMARCE1-209ENST00000478349 TOP2BQ02880 1626 aa25.55■■□□□ 1.68
SMARCE1-209ENST00000478349 BIVM-ERCC5R4GMW8 1640 aa25.52■■□□□ 1.68
SMARCE1-209ENST00000478349 GRIN2AQ12879 1464 aa25.42■■□□□ 1.66
SMARCE1-209ENST00000478349 ADAMTS12P58397 1594 aa25.4■■□□□ 1.66
SMARCE1-209ENST00000478349 FHAD1B1AJZ9 1412 aa25.39■■□□□ 1.66
SMARCE1-209ENST00000478349 ERICH3Q5RHP9 1530 aa25.38■■□□□ 1.65
SMARCE1-209ENST00000478349 TRHP20396 242 aaPredicted RBP25.37■■□□□ 1.65
SMARCE1-209ENST00000478349 NUP160Q12769 1436 aa25.32■■□□□ 1.64
SMARCE1-209ENST00000478349 CEP170Q5SW79 1584 aa25.25■■□□□ 1.63
SMARCE1-209ENST00000478349 SHROOM2Q13796 1616 aa25.15■■□□□ 1.62
SMARCE1-209ENST00000478349 KIF27Q86VH2 1401 aa25.14■■□□□ 1.62
SMARCE1-209ENST00000478349 ERCC6L2Q5T890 1561 aa25.09■■□□□ 1.61
SMARCE1-209ENST00000478349 PRG4Q92954 1404 aaPredicted RBP25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms