RNA–Protein interactions for RNA: ENST00000478063.2

LMNA-214, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 285 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-214ENST00000478063 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
LMNA-214ENST00000478063 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
LMNA-214ENST00000478063 ABCC9O60706 1549 aa26.14■■□□□ 1.78
LMNA-214ENST00000478063 ZCCHC6Q5VYS8 1495 aaKnown RBP26.04■■□□□ 1.76
LMNA-214ENST00000478063 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
LMNA-214ENST00000478063 DCAF8L2P0C7V8 631 aa25.71■■□□□ 1.71
LMNA-214ENST00000478063 NACADO15069 1562 aa25.56■■□□□ 1.68
LMNA-214ENST00000478063 MYO15BQ96JP2 1530 aa25.55■■□□□ 1.68
LMNA-214ENST00000478063 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
LMNA-214ENST00000478063 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
LMNA-214ENST00000478063 UNC13AQ9UPW8 1703 aa25.06■■□□□ 1.6
LMNA-214ENST00000478063 SHROOM4Q9ULL8 1493 aa25.04■■□□□ 1.6
LMNA-214ENST00000478063 BICRAQ9NZM4 1560 aa24.66■■□□□ 1.54
LMNA-214ENST00000478063 PABPN1Q86U42 306 aaKnown RBP eCLIP24.5■■□□□ 1.51
LMNA-214ENST00000478063 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.46
LMNA-214ENST00000478063 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.44
LMNA-214ENST00000478063 SMARCA4P51532 1647 aa24.05■■□□□ 1.44
LMNA-214ENST00000478063 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
LMNA-214ENST00000478063 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.43
LMNA-214ENST00000478063 RSF1Q96T23 1441 aaPredicted RBP23.92■■□□□ 1.42
LMNA-214ENST00000478063 SUPT5HO00267 1087 aaKnown RBP23.86■■□□□ 1.41
LMNA-214ENST00000478063 WIZO95785 1651 aa23.86■■□□□ 1.41
LMNA-214ENST00000478063 PEG3Q9GZU2 1588 aa23.74■■□□□ 1.39
LMNA-214ENST00000478063 CC2D2AQ9P2K1 1620 aa23.71■■□□□ 1.39
LMNA-214ENST00000478063 SMARCA2P51531 1590 aa23.7■■□□□ 1.38
LMNA-214ENST00000478063 ATAD2BQ9ULI0 1458 aa23.66■■□□□ 1.38
LMNA-214ENST00000478063 TOP2AP11388 1531 aaKnown RBP23.58■■□□□ 1.36
LMNA-214ENST00000478063 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
LMNA-214ENST00000478063 HMGXB3Q12766 1538 aa23.53■■□□□ 1.36
LMNA-214ENST00000478063 NCAPD3P42695 1498 aa23.5■■□□□ 1.35
LMNA-214ENST00000478063 DNAJC5BQ9UF47 199 aa23.28■■□□□ 1.32
LMNA-214ENST00000478063 CCDC88BA6NC98 1476 aa23.25■■□□□ 1.31
LMNA-214ENST00000478063 PRDM2Q13029 1718 aa23.01■■□□□ 1.27
LMNA-214ENST00000478063 CFTRP13569 1480 aa22.89■■□□□ 1.25
LMNA-214ENST00000478063 LAMC3Q9Y6N6 1575 aa22.87■■□□□ 1.25
LMNA-214ENST00000478063 CADPSQ9ULU8 1353 aa22.87■■□□□ 1.25
LMNA-214ENST00000478063 NESP48681 1621 aa22.83■■□□□ 1.25
LMNA-214ENST00000478063 ABCC8Q09428 1581 aa22.7■■□□□ 1.22
LMNA-214ENST00000478063 KIF21AQ7Z4S6 1674 aa22.7■■□□□ 1.22
LMNA-214ENST00000478063 FANCD2Q9BXW9 1451 aa22.66■■□□□ 1.22
LMNA-214ENST00000478063 PDS5BQ9NTI5 1447 aa22.63■■□□□ 1.21
LMNA-214ENST00000478063 CHIC1Q5VXU3 224 aa22.62■■□□□ 1.21
LMNA-214ENST00000478063 CEP164Q9UPV0 1460 aa22.59■■□□□ 1.21
LMNA-214ENST00000478063 WRNQ14191 1432 aaPredicted RBP eCLIP22.56■■□□□ 1.2
LMNA-214ENST00000478063 SYNJ1O43426 1573 aa22.54■■□□□ 1.2
LMNA-214ENST00000478063 BIVM-ERCC5R4GMW8 1640 aa22.52■■□□□ 1.2
LMNA-214ENST00000478063 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
LMNA-214ENST00000478063 ERCC6Q03468 1493 aa22.48■■□□□ 1.19
LMNA-214ENST00000478063 CUX1P39880 1505 aa22.48■■□□□ 1.19
LMNA-214ENST00000478063 TRIM41Q8WV44 630 aa22.47■■□□□ 1.19
LMNA-214ENST00000478063 DNMBPQ6XZF7 1577 aa22.45■■□□□ 1.18
LMNA-214ENST00000478063 URB2Q14146 1524 aaKnown RBP22.4■■□□□ 1.18
LMNA-214ENST00000478063 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
LMNA-214ENST00000478063 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
LMNA-214ENST00000478063 THOC2Q8NI27 1593 aaKnown RBP22.38■■□□□ 1.17
LMNA-214ENST00000478063 WDR62O43379 1518 aa22.31■■□□□ 1.16
LMNA-214ENST00000478063 FGD5Q6ZNL6 1462 aa22.29■■□□□ 1.16
LMNA-214ENST00000478063 POLA1P09884 1462 aaPredicted RBP22.22■■□□□ 1.15
LMNA-214ENST00000478063 WDR97A6NE52 1622 aa22.17■■□□□ 1.14
LMNA-214ENST00000478063 RAD54L2Q9Y4B4 1467 aa22.13■■□□□ 1.13
LMNA-214ENST00000478063 TARBP1Q13395 1621 aaKnown RBP22.13■■□□□ 1.13
LMNA-214ENST00000478063 SOGA1O94964 1423 aa22.12■■□□□ 1.13
LMNA-214ENST00000478063 CUX2O14529 1486 aa22.09■■□□□ 1.13
LMNA-214ENST00000478063 ABCA10Q8WWZ4 1543 aa22.07■■□□□ 1.12
LMNA-214ENST00000478063 RUSC2Q8N2Y8 1516 aa22.06■■□□□ 1.12
LMNA-214ENST00000478063 FAM9AQ8IZU1 332 aaPredicted RBP22.05■■□□□ 1.12
LMNA-214ENST00000478063 EEA1Q15075 1411 aa22.05■■□□□ 1.12
LMNA-214ENST00000478063 IFT140Q96RY7 1462 aa22.04■■□□□ 1.12
LMNA-214ENST00000478063 KIF27Q86VH2 1401 aa22.02■■□□□ 1.12
LMNA-214ENST00000478063 ABCA5Q8WWZ7 1642 aa22■■□□□ 1.11
LMNA-214ENST00000478063 PBRM1Q86U86 1689 aa21.98■■□□□ 1.11
LMNA-214ENST00000478063 EIF4G3O43432 1585 aaKnown RBP21.94■■□□□ 1.1
LMNA-214ENST00000478063 TDRD9Q8NDG6 1382 aaKnown RBP21.92■■□□□ 1.1
LMNA-214ENST00000478063 ZNF608Q9ULD9 1512 aaPredicted RBP21.91■■□□□ 1.1
LMNA-214ENST00000478063 GAPVD1Q14C86 1478 aa21.9■■□□□ 1.1
LMNA-214ENST00000478063 CSRNP3Q8WYN3 585 aa21.89■■□□□ 1.09
LMNA-214ENST00000478063 AQRO60306 1485 aaKnown RBP eCLIP21.86■■□□□ 1.09
LMNA-214ENST00000478063 CUL7Q14999 1698 aa21.85■■□□□ 1.09
LMNA-214ENST00000478063 KIF21BO75037 1637 aa21.85■■□□□ 1.09
LMNA-214ENST00000478063 ERICH3Q5RHP9 1530 aa21.84■■□□□ 1.09
LMNA-214ENST00000478063 GRIN2BQ13224 1484 aa21.8■■□□□ 1.08
LMNA-214ENST00000478063 IGF1RP08069 1367 aa21.8■■□□□ 1.08
LMNA-214ENST00000478063 EHMT2Q96KQ7 1210 aa21.75■■□□□ 1.07
LMNA-214ENST00000478063 PRXQ9BXM0 1461 aa21.75■■□□□ 1.07
LMNA-214ENST00000478063 ADAMTS12P58397 1594 aa21.74■■□□□ 1.07
LMNA-214ENST00000478063 GOLGA3Q08378 1498 aa21.74■■□□□ 1.07
LMNA-214ENST00000478063 LOC105371045A0A1W2PR82 267 aa21.72■■□□□ 1.07
LMNA-214ENST00000478063 CARMIL1Q5VZK9 1371 aa21.72■■□□□ 1.07
LMNA-214ENST00000478063 RAPGEF2Q9Y4G8 1499 aa21.71■■□□□ 1.07
LMNA-214ENST00000478063 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
LMNA-214ENST00000478063 MAGI1Q96QZ7 1491 aaPredicted RBP21.67■■□□□ 1.06
LMNA-214ENST00000478063 FHAD1B1AJZ9 1412 aa21.65■■□□□ 1.06
LMNA-214ENST00000478063 CTTNBP2Q8WZ74 1663 aa21.63■■□□□ 1.05
LMNA-214ENST00000478063 CHD1O14646 1710 aa21.61■■□□□ 1.05
LMNA-214ENST00000478063 UBTFP17480 764 aaKnown RBP21.6■■□□□ 1.05
LMNA-214ENST00000478063 SYNJ2O15056 1496 aa21.58■■□□□ 1.04
LMNA-214ENST00000478063 GRIN2AQ12879 1464 aa21.54■■□□□ 1.04
LMNA-214ENST00000478063 TNIKQ9UKE5 1360 aa21.53■■□□□ 1.04
LMNA-214ENST00000478063 CHMP7Q8WUX9 453 aaPredicted RBP21.49■■□□□ 1.03
LMNA-214ENST00000478063 FBLN2P98095 1184 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms