RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 NISCHQ9Y2I1 1504 aa25.12■■□□□ 1.61
SMARCB1-206ENST00000477836 ABCC9O60706 1549 aa23.58■■□□□ 1.36
SMARCB1-206ENST00000477836 CCDC180Q9P1Z9 1646 aa22.82■■□□□ 1.24
SMARCB1-206ENST00000477836 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
SMARCB1-206ENST00000477836 RB1CC1Q8TDY2 1594 aa22.09■■□□□ 1.13
SMARCB1-206ENST00000477836 PABPN1Q86U42 306 aaKnown RBP eCLIP21.87■■□□□ 1.09
SMARCB1-206ENST00000477836 NACADO15069 1562 aa21.75■■□□□ 1.07
SMARCB1-206ENST00000477836 DCAF8L2P0C7V8 631 aa21.61■■□□□ 1.05
SMARCB1-206ENST00000477836 UNC13AQ9UPW8 1703 aa21.6■■□□□ 1.05
SMARCB1-206ENST00000477836 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
SMARCB1-206ENST00000477836 DNAJC5Q9H3Z4 198 aa21.38■■□□□ 1.01
SMARCB1-206ENST00000477836 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
SMARCB1-206ENST00000477836 CC2D2AQ9P2K1 1620 aa21.25■□□□□ 0.99
SMARCB1-206ENST00000477836 MYO15BQ96JP2 1530 aa21.19■□□□□ 0.98
SMARCB1-206ENST00000477836 SHROOM4Q9ULL8 1493 aa21.07■□□□□ 0.96
SMARCB1-206ENST00000477836 EIF4G1Q04637 1599 aaKnown RBP21.02■□□□□ 0.95
SMARCB1-206ENST00000477836 SCRIBQ14160 1630 aa20.82■□□□□ 0.92
SMARCB1-206ENST00000477836 DCAF1Q9Y4B6 1507 aa20.67■□□□□ 0.9
SMARCB1-206ENST00000477836 ZCCHC6Q5VYS8 1495 aaKnown RBP20.66■□□□□ 0.9
SMARCB1-206ENST00000477836 CUX2O14529 1486 aa20.56■□□□□ 0.88
SMARCB1-206ENST00000477836 ERCC6Q03468 1493 aa20.41■□□□□ 0.86
SMARCB1-206ENST00000477836 TRIM41Q8WV44 630 aa20.21■□□□□ 0.83
SMARCB1-206ENST00000477836 NCAPD3P42695 1498 aa20.09■□□□□ 0.81
SMARCB1-206ENST00000477836 NESP48681 1621 aa20.05■□□□□ 0.8
SMARCB1-206ENST00000477836 THOC2Q8NI27 1593 aaKnown RBP19.95■□□□□ 0.78
SMARCB1-206ENST00000477836 ATAD2BQ9ULI0 1458 aa19.95■□□□□ 0.78
SMARCB1-206ENST00000477836 HMGXB3Q12766 1538 aa19.87■□□□□ 0.77
SMARCB1-206ENST00000477836 SMARCA2P51531 1590 aa19.84■□□□□ 0.77
SMARCB1-206ENST00000477836 KIF21AQ7Z4S6 1674 aa19.76■□□□□ 0.75
SMARCB1-206ENST00000477836 LAMC3Q9Y6N6 1575 aa19.76■□□□□ 0.75
SMARCB1-206ENST00000477836 SMARCA4P51532 1647 aa19.75■□□□□ 0.75
SMARCB1-206ENST00000477836 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
SMARCB1-206ENST00000477836 PDS5BQ9NTI5 1447 aa19.69■□□□□ 0.74
SMARCB1-206ENST00000477836 BAZ1AQ9NRL2 1556 aaPredicted RBP19.6■□□□□ 0.73
SMARCB1-206ENST00000477836 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
SMARCB1-206ENST00000477836 OSCARQ8IYS5 282 aa19.55■□□□□ 0.72
SMARCB1-206ENST00000477836 PEG3Q9GZU2 1588 aa19.53■□□□□ 0.72
SMARCB1-206ENST00000477836 WDR62O43379 1518 aa19.51■□□□□ 0.71
SMARCB1-206ENST00000477836 CADPSQ9ULU8 1353 aa19.47■□□□□ 0.71
SMARCB1-206ENST00000477836 RIMBP3CA6NJZ7 1639 aa19.36■□□□□ 0.69
SMARCB1-206ENST00000477836 RIMBP3BA6NNM3 1639 aa19.36■□□□□ 0.69
SMARCB1-206ENST00000477836 RIMBP3Q9UFD9 1639 aa19.36■□□□□ 0.69
SMARCB1-206ENST00000477836 MROH2BQ7Z745 1585 aa19.36■□□□□ 0.69
SMARCB1-206ENST00000477836 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
SMARCB1-206ENST00000477836 FANCD2Q9BXW9 1451 aa19.26■□□□□ 0.67
SMARCB1-206ENST00000477836 ARHGEF11O15085 1522 aa19.22■□□□□ 0.67
SMARCB1-206ENST00000477836 TRHP20396 242 aaPredicted RBP19.21■□□□□ 0.67
SMARCB1-206ENST00000477836 CYB5RLQ6IPT4 315 aa19.16■□□□□ 0.66
SMARCB1-206ENST00000477836 AEBP2Q6ZN18 517 aaPredicted RBP19.16■□□□□ 0.66
SMARCB1-206ENST00000477836 URB2Q14146 1524 aaKnown RBP19.15■□□□□ 0.66
SMARCB1-206ENST00000477836 WIZO95785 1651 aa19.11■□□□□ 0.65
SMARCB1-206ENST00000477836 CFTRP13569 1480 aa19.09■□□□□ 0.65
SMARCB1-206ENST00000477836 ZNF608Q9ULD9 1512 aaPredicted RBP19.04■□□□□ 0.64
SMARCB1-206ENST00000477836 ARAP1Q96P48 1450 aa18.98■□□□□ 0.63
SMARCB1-206ENST00000477836 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
SMARCB1-206ENST00000477836 EIF4G3O43432 1585 aaKnown RBP18.89■□□□□ 0.61
SMARCB1-206ENST00000477836 CHD1O14646 1710 aa18.88■□□□□ 0.61
SMARCB1-206ENST00000477836 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
SMARCB1-206ENST00000477836 FBLN2P98095 1184 aa18.84■□□□□ 0.61
SMARCB1-206ENST00000477836 PRDM2Q13029 1718 aa18.83■□□□□ 0.61
SMARCB1-206ENST00000477836 TOPBP1Q92547 1522 aa18.8■□□□□ 0.6
SMARCB1-206ENST00000477836 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
SMARCB1-206ENST00000477836 AQRO60306 1485 aaKnown RBP eCLIP18.78■□□□□ 0.6
SMARCB1-206ENST00000477836 ABCC8Q09428 1581 aa18.7■□□□□ 0.58
SMARCB1-206ENST00000477836 TARBP1Q13395 1621 aaKnown RBP18.69■□□□□ 0.58
SMARCB1-206ENST00000477836 DNMBPQ6XZF7 1577 aa18.67■□□□□ 0.58
SMARCB1-206ENST00000477836 CLASP1Q7Z460 1538 aa18.63■□□□□ 0.57
SMARCB1-206ENST00000477836 CCDC88BA6NC98 1476 aa18.61■□□□□ 0.57
SMARCB1-206ENST00000477836 POLA1P09884 1462 aaPredicted RBP18.58■□□□□ 0.56
SMARCB1-206ENST00000477836 SNAPC4Q5SXM2 1469 aa18.57■□□□□ 0.56
SMARCB1-206ENST00000477836 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
SMARCB1-206ENST00000477836 CHMP7Q8WUX9 453 aaPredicted RBP18.56■□□□□ 0.56
SMARCB1-206ENST00000477836 TDRD9Q8NDG6 1382 aaKnown RBP18.55■□□□□ 0.56
SMARCB1-206ENST00000477836 RAD54L2Q9Y4B4 1467 aa18.54■□□□□ 0.56
SMARCB1-206ENST00000477836 GAPVD1Q14C86 1478 aa18.51■□□□□ 0.55
SMARCB1-206ENST00000477836 SOGA1O94964 1423 aa18.49■□□□□ 0.55
SMARCB1-206ENST00000477836 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.54
SMARCB1-206ENST00000477836 WDR97A6NE52 1622 aa18.42■□□□□ 0.54
SMARCB1-206ENST00000477836 SYNJ2O15056 1496 aa18.41■□□□□ 0.54
SMARCB1-206ENST00000477836 ILDR1Q86SU0 546 aaPredicted RBP18.41■□□□□ 0.54
SMARCB1-206ENST00000477836 GRIN2BQ13224 1484 aa18.39■□□□□ 0.54
SMARCB1-206ENST00000477836 FGD5Q6ZNL6 1462 aa18.37■□□□□ 0.53
SMARCB1-206ENST00000477836 ERCC6L2Q5T890 1561 aa18.32■□□□□ 0.52
SMARCB1-206ENST00000477836 PBRM1Q86U86 1689 aa18.28■□□□□ 0.52
SMARCB1-206ENST00000477836 KIF13AQ9H1H9 1805 aa18.28■□□□□ 0.52
SMARCB1-206ENST00000477836 CUX1P39880 1505 aa18.23■□□□□ 0.51
SMARCB1-206ENST00000477836 KDM4FA0A1W2PPD8 638 aa18.22■□□□□ 0.51
SMARCB1-206ENST00000477836 CEP170Q5SW79 1584 aa18.21■□□□□ 0.51
SMARCB1-206ENST00000477836 GRIN2AQ12879 1464 aa18.16■□□□□ 0.5
SMARCB1-206ENST00000477836 FAM69CQ0P6D2 419 aa18.15■□□□□ 0.5
SMARCB1-206ENST00000477836 ABCA5Q8WWZ7 1642 aa18.13■□□□□ 0.49
SMARCB1-206ENST00000477836 NUP160Q12769 1436 aa18.11■□□□□ 0.49
SMARCB1-206ENST00000477836 SHROOM2Q13796 1616 aa18.11■□□□□ 0.49
SMARCB1-206ENST00000477836 ABCA10Q8WWZ4 1543 aa18.09■□□□□ 0.49
SMARCB1-206ENST00000477836 ABCC10Q5T3U5 1492 aa18.09■□□□□ 0.49
SMARCB1-206ENST00000477836 KDM6BO15054 1643 aa18.08■□□□□ 0.48
SMARCB1-206ENST00000477836 ADAMTS12P58397 1594 aa18.06■□□□□ 0.48
SMARCB1-206ENST00000477836 NPM1P06748 294 aaKnown RBP eCLIP18.04■□□□□ 0.48
SMARCB1-206ENST00000477836 PRG4Q92954 1404 aaPredicted RBP18.03■□□□□ 0.48
SMARCB1-206ENST00000477836 DIP2BQ9P265 1576 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms