RNA–Protein interactions for RNA: ENST00000477794.2

PRKCD-204, Transcript of protein kinase C delta, humanhuman

TSL 3

Gene PRKCD, Length 404 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCD-204ENST00000477794 NISCHQ9Y2I1 1504 aa46.69■■■■■ 5.07
PRKCD-204ENST00000477794 ABCC9O60706 1549 aa42.15■■■■■ 4.34
PRKCD-204ENST00000477794 CCDC180Q9P1Z9 1646 aa42■■■■■ 4.31
PRKCD-204ENST00000477794 RB1CC1Q8TDY2 1594 aa40.13■■■■■ 4.01
PRKCD-204ENST00000477794 NACADO15069 1562 aa39.8■■■■□ 3.96
PRKCD-204ENST00000477794 DNAJC5BQ9UF47 199 aa39.6■■■■□ 3.93
PRKCD-204ENST00000477794 DCAF8L2P0C7V8 631 aa39.58■■■■□ 3.93
PRKCD-204ENST00000477794 PABPN1Q86U42 306 aaKnown RBP eCLIP39.22■■■■□ 3.87
PRKCD-204ENST00000477794 MYO15BQ96JP2 1530 aa39.22■■■■□ 3.87
PRKCD-204ENST00000477794 UNC13AQ9UPW8 1703 aa38.97■■■■□ 3.83
PRKCD-204ENST00000477794 BICRAQ9NZM4 1560 aa38.79■■■■□ 3.8
PRKCD-204ENST00000477794 ZCCHC6Q5VYS8 1495 aaKnown RBP38.65■■■■□ 3.78
PRKCD-204ENST00000477794 DCAF1Q9Y4B6 1507 aa38.62■■■■□ 3.77
PRKCD-204ENST00000477794 SHROOM4Q9ULL8 1493 aa38.51■■■■□ 3.76
PRKCD-204ENST00000477794 SCRIBQ14160 1630 aa38.2■■■■□ 3.71
PRKCD-204ENST00000477794 CECR2Q9BXF3 1484 aa38.05■■■■□ 3.68
PRKCD-204ENST00000477794 CC2D2AQ9P2K1 1620 aa38.05■■■■□ 3.68
PRKCD-204ENST00000477794 EIF4G1Q04637 1599 aaKnown RBP37.95■■■■□ 3.67
PRKCD-204ENST00000477794 NCAPD3P42695 1498 aa36.74■■■■□ 3.47
PRKCD-204ENST00000477794 DNAJC5Q9H3Z4 198 aa36.68■■■■□ 3.46
PRKCD-204ENST00000477794 ATAD2BQ9ULI0 1458 aa36.56■■■■□ 3.44
PRKCD-204ENST00000477794 ERCC6Q03468 1493 aa36.54■■■■□ 3.44
PRKCD-204ENST00000477794 SMARCA2P51531 1590 aa36.53■■■■□ 3.44
PRKCD-204ENST00000477794 CUX2O14529 1486 aa36.52■■■■□ 3.44
PRKCD-204ENST00000477794 HMGXB3Q12766 1538 aa36.44■■■■□ 3.42
PRKCD-204ENST00000477794 SMARCA4P51532 1647 aa36.44■■■■□ 3.42
PRKCD-204ENST00000477794 BAZ1AQ9NRL2 1556 aaPredicted RBP36.32■■■■□ 3.41
PRKCD-204ENST00000477794 BAZ1BQ9UIG0 1483 aaKnown RBP36.25■■■■□ 3.39
PRKCD-204ENST00000477794 PEG3Q9GZU2 1588 aa36.11■■■■□ 3.37
PRKCD-204ENST00000477794 NESP48681 1621 aa36.09■■■■□ 3.37
PRKCD-204ENST00000477794 LAMC3Q9Y6N6 1575 aa35.94■■■■□ 3.34
PRKCD-204ENST00000477794 MROH2BQ7Z745 1585 aa35.91■■■■□ 3.34
PRKCD-204ENST00000477794 PDS5BQ9NTI5 1447 aa35.83■■■■□ 3.33
PRKCD-204ENST00000477794 THOC2Q8NI27 1593 aaKnown RBP35.78■■■■□ 3.32
PRKCD-204ENST00000477794 CADPSQ9ULU8 1353 aa35.63■■■■□ 3.29
PRKCD-204ENST00000477794 KIF21AQ7Z4S6 1674 aa35.6■■■■□ 3.29
PRKCD-204ENST00000477794 MRC2Q9UBG0 1479 aa35.45■■■■□ 3.27
PRKCD-204ENST00000477794 WIZO95785 1651 aa35.43■■■■□ 3.26
PRKCD-204ENST00000477794 WDR62O43379 1518 aa35.32■■■■□ 3.25
PRKCD-204ENST00000477794 CEP164Q9UPV0 1460 aa35.29■■■■□ 3.24
PRKCD-204ENST00000477794 FANCD2Q9BXW9 1451 aa35.2■■■■□ 3.23
PRKCD-204ENST00000477794 RSF1Q96T23 1441 aaPredicted RBP35.15■■■■□ 3.22
PRKCD-204ENST00000477794 CFTRP13569 1480 aa35.15■■■■□ 3.22
PRKCD-204ENST00000477794 TOP2AP11388 1531 aaKnown RBP35.09■■■■□ 3.21
PRKCD-204ENST00000477794 TRIM41Q8WV44 630 aa35■■■■□ 3.19
PRKCD-204ENST00000477794 OSCARQ8IYS5 282 aa34.86■■■■□ 3.17
PRKCD-204ENST00000477794 URB2Q14146 1524 aaKnown RBP34.85■■■■□ 3.17
PRKCD-204ENST00000477794 PRDM2Q13029 1718 aa34.69■■■■□ 3.14
PRKCD-204ENST00000477794 CCDC88BA6NC98 1476 aa34.65■■■■□ 3.14
PRKCD-204ENST00000477794 IFT140Q96RY7 1462 aa34.61■■■■□ 3.13
PRKCD-204ENST00000477794 ABCC8Q09428 1581 aa34.54■■■■□ 3.12
PRKCD-204ENST00000477794 TOPBP1Q92547 1522 aa34.48■■■■□ 3.11
PRKCD-204ENST00000477794 ZNF608Q9ULD9 1512 aaPredicted RBP34.44■■■■□ 3.1
PRKCD-204ENST00000477794 DNMBPQ6XZF7 1577 aa34.36■■■■□ 3.09
PRKCD-204ENST00000477794 EIF4G3O43432 1585 aaKnown RBP34.27■■■■□ 3.08
PRKCD-204ENST00000477794 RIMBP3CA6NJZ7 1639 aa34.26■■■■□ 3.07
PRKCD-204ENST00000477794 RIMBP3BA6NNM3 1639 aa34.26■■■■□ 3.07
PRKCD-204ENST00000477794 RIMBP3Q9UFD9 1639 aa34.26■■■■□ 3.07
PRKCD-204ENST00000477794 ARHGEF11O15085 1522 aa34.19■■■■□ 3.06
PRKCD-204ENST00000477794 AQRO60306 1485 aaKnown RBP eCLIP34.14■■■■□ 3.063e-6■■■■□ 24.7
PRKCD-204ENST00000477794 TARBP1Q13395 1621 aaKnown RBP34.13■■■■□ 3.05
PRKCD-204ENST00000477794 POLA1P09884 1462 aaPredicted RBP34.11■■■■□ 3.05
PRKCD-204ENST00000477794 FBLN2P98095 1184 aa34.07■■■■□ 3.04
PRKCD-204ENST00000477794 SOGA1O94964 1423 aa34.01■■■■□ 3.03
PRKCD-204ENST00000477794 CYB5RLQ6IPT4 315 aa34■■■■□ 3.03
PRKCD-204ENST00000477794 CHD1O14646 1710 aa33.99■■■■□ 3.03
PRKCD-204ENST00000477794 RAD54L2Q9Y4B4 1467 aa33.95■■■■□ 3.02
PRKCD-204ENST00000477794 TDRD9Q8NDG6 1382 aaKnown RBP33.93■■■■□ 3.02
PRKCD-204ENST00000477794 WDR97A6NE52 1622 aa33.92■■■■□ 3.02
PRKCD-204ENST00000477794 FGD5Q6ZNL6 1462 aa33.88■■■■□ 3.01
PRKCD-204ENST00000477794 CHMP7Q8WUX9 453 aaPredicted RBP33.82■■■■□ 3
PRKCD-204ENST00000477794 SNAPC4Q5SXM2 1469 aa33.82■■■■□ 3
PRKCD-204ENST00000477794 ARAP1Q96P48 1450 aa33.8■■■■□ 3
PRKCD-204ENST00000477794 MAGI1Q96QZ7 1491 aaPredicted RBP33.79■■■■□ 3
PRKCD-204ENST00000477794 CUX1P39880 1505 aa33.77■■■■□ 3
PRKCD-204ENST00000477794 GRIN2BQ13224 1484 aa33.76■■■□□ 2.99
PRKCD-204ENST00000477794 TRHP20396 242 aaPredicted RBP33.75■■■□□ 2.99
PRKCD-204ENST00000477794 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
PRKCD-204ENST00000477794 SYNJ2O15056 1496 aa33.66■■■□□ 2.98
PRKCD-204ENST00000477794 CLASP1Q7Z460 1538 aa33.65■■■□□ 2.98
PRKCD-204ENST00000477794 GAPVD1Q14C86 1478 aa33.59■■■□□ 2.97
PRKCD-204ENST00000477794 SUPT5HO00267 1087 aaKnown RBP33.51■■■□□ 2.95
PRKCD-204ENST00000477794 ABCA10Q8WWZ4 1543 aa33.51■■■□□ 2.95
PRKCD-204ENST00000477794 PBRM1Q86U86 1689 aa33.48■■■□□ 2.95
PRKCD-204ENST00000477794 WRNQ14191 1432 aaPredicted RBP eCLIP33.42■■■□□ 2.94
PRKCD-204ENST00000477794 ABCA5Q8WWZ7 1642 aa33.41■■■□□ 2.94
PRKCD-204ENST00000477794 GRIN2AQ12879 1464 aa33.29■■■□□ 2.92
PRKCD-204ENST00000477794 TOP2BQ02880 1626 aa33.22■■■□□ 2.91
PRKCD-204ENST00000477794 ADAMTS12P58397 1594 aa33.2■■■□□ 2.91
PRKCD-204ENST00000477794 BIVM-ERCC5R4GMW8 1640 aa33.19■■■□□ 2.9
PRKCD-204ENST00000477794 FHAD1B1AJZ9 1412 aa33.19■■■□□ 2.9
PRKCD-204ENST00000477794 NUP160Q12769 1436 aa33.17■■■□□ 2.9
PRKCD-204ENST00000477794 ERICH3Q5RHP9 1530 aa33.12■■■□□ 2.89
PRKCD-204ENST00000477794 CEP170Q5SW79 1584 aa33.09■■■□□ 2.89
PRKCD-204ENST00000477794 ERCC6L2Q5T890 1561 aa33.02■■■□□ 2.88
PRKCD-204ENST00000477794 SHROOM2Q13796 1616 aa32.99■■■□□ 2.87
PRKCD-204ENST00000477794 AEBP2Q6ZN18 517 aaPredicted RBP32.98■■■□□ 2.87
PRKCD-204ENST00000477794 PRG4Q92954 1404 aaPredicted RBP32.9■■■□□ 2.86
PRKCD-204ENST00000477794 JPH4Q96JJ6 628 aa32.88■■■□□ 2.85
PRKCD-204ENST00000477794 NPM1P06748 294 aaKnown RBP eCLIP32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms