RNA–Protein interactions for RNA: ENST00000477485.1

RTFDC1-206, Transcript of Protein RTF2 homolog, humanhuman

TSL 3

Gene RTFDC1, Length 464 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-206ENST00000477485 NISCHQ9Y2I1 1504 aa16.86■□□□□ 0.29
RTFDC1-206ENST00000477485 ABCC9O60706 1549 aa15.4■□□□□ 0.06
RTFDC1-206ENST00000477485 CCDC180Q9P1Z9 1646 aa15.27■□□□□ 0.03
RTFDC1-206ENST00000477485 RB1CC1Q8TDY2 1594 aa14.59□□□□□ -0.07
RTFDC1-206ENST00000477485 DNAJC5BQ9UF47 199 aa14.46□□□□□ -0.09
RTFDC1-206ENST00000477485 NACADO15069 1562 aa14.41□□□□□ -0.1
RTFDC1-206ENST00000477485 DCAF8L2P0C7V8 631 aa14.39□□□□□ -0.11
RTFDC1-206ENST00000477485 UNC13AQ9UPW8 1703 aa14.35□□□□□ -0.11
RTFDC1-206ENST00000477485 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.126e-6■■■■□ 21.1
RTFDC1-206ENST00000477485 BICRAQ9NZM4 1560 aa14.13□□□□□ -0.15
RTFDC1-206ENST00000477485 MYO15BQ96JP2 1530 aa14.07□□□□□ -0.16
RTFDC1-206ENST00000477485 SCRIBQ14160 1630 aa13.95□□□□□ -0.18
RTFDC1-206ENST00000477485 ZCCHC6Q5VYS8 1495 aaKnown RBP13.93□□□□□ -0.18
RTFDC1-206ENST00000477485 CC2D2AQ9P2K1 1620 aa13.91□□□□□ -0.18
RTFDC1-206ENST00000477485 SHROOM4Q9ULL8 1493 aa13.87□□□□□ -0.19
RTFDC1-206ENST00000477485 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
RTFDC1-206ENST00000477485 CECR2Q9BXF3 1484 aa13.86□□□□□ -0.19
RTFDC1-206ENST00000477485 EIF4G1Q04637 1599 aaKnown RBP13.82□□□□□ -0.2
RTFDC1-206ENST00000477485 DNAJC5Q9H3Z4 198 aa13.38□□□□□ -0.27
RTFDC1-206ENST00000477485 ERCC6Q03468 1493 aa13.34□□□□□ -0.27
RTFDC1-206ENST00000477485 CUX2O14529 1486 aa13.28□□□□□ -0.28
RTFDC1-206ENST00000477485 SMARCA4P51532 1647 aa13.24□□□□□ -0.29
RTFDC1-206ENST00000477485 NCAPD3P42695 1498 aa13.23□□□□□ -0.29
RTFDC1-206ENST00000477485 SMARCA2P51531 1590 aa13.22□□□□□ -0.29
RTFDC1-206ENST00000477485 ATAD2BQ9ULI0 1458 aa13.21□□□□□ -0.3
RTFDC1-206ENST00000477485 HMGXB3Q12766 1538 aa13.19□□□□□ -0.3
RTFDC1-206ENST00000477485 NESP48681 1621 aa13.17□□□□□ -0.3
RTFDC1-206ENST00000477485 AEBP2Q6ZN18 517 aaPredicted RBP13.14□□□□□ -0.31
RTFDC1-206ENST00000477485 BAZ1BQ9UIG0 1483 aaKnown RBP13.14□□□□□ -0.31
RTFDC1-206ENST00000477485 BAZ1AQ9NRL2 1556 aaPredicted RBP13.12□□□□□ -0.31
RTFDC1-206ENST00000477485 KIF21AQ7Z4S6 1674 aa13.09□□□□□ -0.31
RTFDC1-206ENST00000477485 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
RTFDC1-206ENST00000477485 LAMC3Q9Y6N6 1575 aa13.05□□□□□ -0.32
RTFDC1-206ENST00000477485 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
RTFDC1-206ENST00000477485 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
RTFDC1-206ENST00000477485 CHIC1Q5VXU3 224 aa13□□□□□ -0.33
RTFDC1-206ENST00000477485 PDS5BQ9NTI5 1447 aa12.95□□□□□ -0.34
RTFDC1-206ENST00000477485 WIZO95785 1651 aa12.92□□□□□ -0.34
RTFDC1-206ENST00000477485 TRIM41Q8WV44 630 aa12.88□□□□□ -0.35
RTFDC1-206ENST00000477485 MRC2Q9UBG0 1479 aa12.87□□□□□ -0.35
RTFDC1-206ENST00000477485 CADPSQ9ULU8 1353 aa12.85□□□□□ -0.35
RTFDC1-206ENST00000477485 WDR62O43379 1518 aa12.84□□□□□ -0.35
RTFDC1-206ENST00000477485 CEP164Q9UPV0 1460 aa12.81□□□□□ -0.36
RTFDC1-206ENST00000477485 FANCD2Q9BXW9 1451 aa12.76□□□□□ -0.37
RTFDC1-206ENST00000477485 PRDM2Q13029 1718 aa12.73□□□□□ -0.37
RTFDC1-206ENST00000477485 TOP2AP11388 1531 aaKnown RBP12.69□□□□□ -0.38
RTFDC1-206ENST00000477485 CFTRP13569 1480 aa12.67□□□□□ -0.38
RTFDC1-206ENST00000477485 URB2Q14146 1524 aaKnown RBP12.66□□□□□ -0.38
RTFDC1-206ENST00000477485 RSF1Q96T23 1441 aaPredicted RBP12.63□□□□□ -0.39
RTFDC1-206ENST00000477485 OSCARQ8IYS5 282 aa12.63□□□□□ -0.39
RTFDC1-206ENST00000477485 RIMBP3CA6NJZ7 1639 aa12.58□□□□□ -0.4
RTFDC1-206ENST00000477485 RIMBP3BA6NNM3 1639 aa12.58□□□□□ -0.4
RTFDC1-206ENST00000477485 RIMBP3Q9UFD9 1639 aa12.58□□□□□ -0.4
RTFDC1-206ENST00000477485 ZNF608Q9ULD9 1512 aaPredicted RBP12.53□□□□□ -0.4
RTFDC1-206ENST00000477485 IFT140Q96RY7 1462 aa12.53□□□□□ -0.4
RTFDC1-206ENST00000477485 EIF4G3O43432 1585 aaKnown RBP12.52□□□□□ -0.4
RTFDC1-206ENST00000477485 CCDC88BA6NC98 1476 aa12.52□□□□□ -0.41
RTFDC1-206ENST00000477485 CHD1O14646 1710 aa12.51□□□□□ -0.41
RTFDC1-206ENST00000477485 TOPBP1Q92547 1522 aa12.5□□□□□ -0.41
RTFDC1-206ENST00000477485 ARHGEF11O15085 1522 aa12.48□□□□□ -0.41
RTFDC1-206ENST00000477485 DNMBPQ6XZF7 1577 aa12.47□□□□□ -0.41
RTFDC1-206ENST00000477485 ABCC8Q09428 1581 aa12.44□□□□□ -0.42
RTFDC1-206ENST00000477485 TARBP1Q13395 1621 aaKnown RBP12.41□□□□□ -0.42
RTFDC1-206ENST00000477485 FBLN2P98095 1184 aa12.41□□□□□ -0.42
RTFDC1-206ENST00000477485 AQRO60306 1485 aaKnown RBP eCLIP12.4□□□□□ -0.434e-8■■□□□ 11.4
RTFDC1-206ENST00000477485 CYB5RLQ6IPT4 315 aa12.39□□□□□ -0.43
RTFDC1-206ENST00000477485 POLA1P09884 1462 aaPredicted RBP12.36□□□□□ -0.43
RTFDC1-206ENST00000477485 TRHP20396 242 aaPredicted RBP12.36□□□□□ -0.43
RTFDC1-206ENST00000477485 RAD54L2Q9Y4B4 1467 aa12.34□□□□□ -0.43
RTFDC1-206ENST00000477485 ARAP1Q96P48 1450 aa12.33□□□□□ -0.44
RTFDC1-206ENST00000477485 TDRD9Q8NDG6 1382 aaKnown RBP12.3□□□□□ -0.44
RTFDC1-206ENST00000477485 SOGA1O94964 1423 aa12.29□□□□□ -0.44
RTFDC1-206ENST00000477485 SNAPC4Q5SXM2 1469 aa12.29□□□□□ -0.44
RTFDC1-206ENST00000477485 PBRM1Q86U86 1689 aa12.29□□□□□ -0.44
RTFDC1-206ENST00000477485 FGD5Q6ZNL6 1462 aa12.28□□□□□ -0.44
RTFDC1-206ENST00000477485 SYNJ1O43426 1573 aa12.27□□□□□ -0.44
RTFDC1-206ENST00000477485 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
RTFDC1-206ENST00000477485 CLASP1Q7Z460 1538 aa12.24□□□□□ -0.45
RTFDC1-206ENST00000477485 CHMP7Q8WUX9 453 aaPredicted RBP12.24□□□□□ -0.45
RTFDC1-206ENST00000477485 CUX1P39880 1505 aa12.23□□□□□ -0.45
RTFDC1-206ENST00000477485 MAGI1Q96QZ7 1491 aaPredicted RBP12.22□□□□□ -0.45
RTFDC1-206ENST00000477485 GRIN2BQ13224 1484 aa12.21□□□□□ -0.45
RTFDC1-206ENST00000477485 SYNJ2O15056 1496 aa12.19□□□□□ -0.46
RTFDC1-206ENST00000477485 GAPVD1Q14C86 1478 aa12.15□□□□□ -0.46
RTFDC1-206ENST00000477485 ABCA5Q8WWZ7 1642 aa12.15□□□□□ -0.47
RTFDC1-206ENST00000477485 ABCA10Q8WWZ4 1543 aa12.09□□□□□ -0.47
RTFDC1-206ENST00000477485 SUPT5HO00267 1087 aaKnown RBP12.08□□□□□ -0.48
RTFDC1-206ENST00000477485 ERCC6L2Q5T890 1561 aa12.08□□□□□ -0.48
RTFDC1-206ENST00000477485 ADAMTS12P58397 1594 aa12.07□□□□□ -0.48
RTFDC1-206ENST00000477485 GRIN2AQ12879 1464 aa12.06□□□□□ -0.48
RTFDC1-206ENST00000477485 CEP170Q5SW79 1584 aa12.05□□□□□ -0.48
RTFDC1-206ENST00000477485 BIVM-ERCC5R4GMW8 1640 aa12.04□□□□□ -0.48
RTFDC1-206ENST00000477485 WRNQ14191 1432 aaPredicted RBP eCLIP12.03□□□□□ -0.48
RTFDC1-206ENST00000477485 TOP2BQ02880 1626 aa12.02□□□□□ -0.49
RTFDC1-206ENST00000477485 SHROOM2Q13796 1616 aa12□□□□□ -0.49
RTFDC1-206ENST00000477485 KIF13AQ9H1H9 1805 aa12□□□□□ -0.49
RTFDC1-206ENST00000477485 FHAD1B1AJZ9 1412 aa11.97□□□□□ -0.49
RTFDC1-206ENST00000477485 NUP160Q12769 1436 aa11.97□□□□□ -0.49
RTFDC1-206ENST00000477485 ERICH3Q5RHP9 1530 aa11.96□□□□□ -0.5
RTFDC1-206ENST00000477485 PRG4Q92954 1404 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms