RNA–Protein interactions for RNA: ENST00000477182.5

LSM2-212, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM2, Length 767 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-212ENST00000477182 NISCHQ9Y2I1 1504 aa28.64■■■□□ 2.17
LSM2-212ENST00000477182 ABCC9O60706 1549 aa26.65■■□□□ 1.86
LSM2-212ENST00000477182 CCDC180Q9P1Z9 1646 aa26.04■■□□□ 1.76
LSM2-212ENST00000477182 DNAJC5BQ9UF47 199 aa25.57■■□□□ 1.68
LSM2-212ENST00000477182 RB1CC1Q8TDY2 1594 aa25.13■■□□□ 1.61
LSM2-212ENST00000477182 NACADO15069 1562 aa24.79■■□□□ 1.56
LSM2-212ENST00000477182 PABPN1Q86U42 306 aaKnown RBP eCLIP24.68■■□□□ 1.54
LSM2-212ENST00000477182 UNC13AQ9UPW8 1703 aa24.5■■□□□ 1.51
LSM2-212ENST00000477182 DCAF8L2P0C7V8 631 aa24.46■■□□□ 1.51
LSM2-212ENST00000477182 BICRAQ9NZM4 1560 aa24.35■■□□□ 1.49
LSM2-212ENST00000477182 MYO15BQ96JP2 1530 aa24.24■■□□□ 1.47
LSM2-212ENST00000477182 CECR2Q9BXF3 1484 aa24.11■■□□□ 1.45
LSM2-212ENST00000477182 DNAJC5Q9H3Z4 198 aa24.08■■□□□ 1.45
LSM2-212ENST00000477182 SHROOM4Q9ULL8 1493 aa24.07■■□□□ 1.44
LSM2-212ENST00000477182 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
LSM2-212ENST00000477182 EIF4G1Q04637 1599 aaKnown RBP23.84■■□□□ 1.41
LSM2-212ENST00000477182 DCAF1Q9Y4B6 1507 aa23.65■■□□□ 1.38
LSM2-212ENST00000477182 SCRIBQ14160 1630 aa23.61■■□□□ 1.37
LSM2-212ENST00000477182 ZCCHC6Q5VYS8 1495 aaKnown RBP23.57■■□□□ 1.36
LSM2-212ENST00000477182 CUX2O14529 1486 aa23.33■■□□□ 1.33
LSM2-212ENST00000477182 ERCC6Q03468 1493 aa23.11■■□□□ 1.29
LSM2-212ENST00000477182 NCAPD3P42695 1498 aa22.87■■□□□ 1.25
LSM2-212ENST00000477182 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
LSM2-212ENST00000477182 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
LSM2-212ENST00000477182 NESP48681 1621 aa22.67■■□□□ 1.22
LSM2-212ENST00000477182 HMGXB3Q12766 1538 aa22.64■■□□□ 1.21
LSM2-212ENST00000477182 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
LSM2-212ENST00000477182 THOC2Q8NI27 1593 aaKnown RBP22.61■■□□□ 1.21
LSM2-212ENST00000477182 LAMC3Q9Y6N6 1575 aa22.49■■□□□ 1.19
LSM2-212ENST00000477182 SMARCA4P51532 1647 aa22.48■■□□□ 1.19
LSM2-212ENST00000477182 BAZ1BQ9UIG0 1483 aaKnown RBP22.44■■□□□ 1.18
LSM2-212ENST00000477182 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.17
LSM2-212ENST00000477182 PDS5BQ9NTI5 1447 aa22.39■■□□□ 1.17
LSM2-212ENST00000477182 BAZ1AQ9NRL2 1556 aaPredicted RBP22.3■■□□□ 1.16
LSM2-212ENST00000477182 PEG3Q9GZU2 1588 aa22.29■■□□□ 1.16
LSM2-212ENST00000477182 MRC2Q9UBG0 1479 aa22.2■■□□□ 1.14
LSM2-212ENST00000477182 WDR62O43379 1518 aa22.16■■□□□ 1.14
LSM2-212ENST00000477182 CADPSQ9ULU8 1353 aa22.14■■□□□ 1.14
LSM2-212ENST00000477182 OSCARQ8IYS5 282 aa22.14■■□□□ 1.13
LSM2-212ENST00000477182 MROH2BQ7Z745 1585 aa22.02■■□□□ 1.12
LSM2-212ENST00000477182 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
LSM2-212ENST00000477182 RIMBP3CA6NJZ7 1639 aa21.88■■□□□ 1.09
LSM2-212ENST00000477182 RIMBP3BA6NNM3 1639 aa21.88■■□□□ 1.09
LSM2-212ENST00000477182 RIMBP3Q9UFD9 1639 aa21.88■■□□□ 1.09
LSM2-212ENST00000477182 FANCD2Q9BXW9 1451 aa21.88■■□□□ 1.09
LSM2-212ENST00000477182 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
LSM2-212ENST00000477182 CFTRP13569 1480 aa21.74■■□□□ 1.07
LSM2-212ENST00000477182 WIZO95785 1651 aa21.72■■□□□ 1.07
LSM2-212ENST00000477182 URB2Q14146 1524 aaKnown RBP21.71■■□□□ 1.07
LSM2-212ENST00000477182 TRHP20396 242 aaPredicted RBP21.64■■□□□ 1.05
LSM2-212ENST00000477182 CYB5RLQ6IPT4 315 aa21.64■■□□□ 1.05
LSM2-212ENST00000477182 IFT140Q96RY7 1462 aa21.58■■□□□ 1.05
LSM2-212ENST00000477182 AEBP2Q6ZN18 517 aaPredicted RBP21.57■■□□□ 1.04
LSM2-212ENST00000477182 ZNF608Q9ULD9 1512 aaPredicted RBP21.55■■□□□ 1.04
LSM2-212ENST00000477182 PRDM2Q13029 1718 aa21.49■■□□□ 1.03
LSM2-212ENST00000477182 ARAP1Q96P48 1450 aa21.46■■□□□ 1.03
LSM2-212ENST00000477182 TOP2AP11388 1531 aaKnown RBP21.44■■□□□ 1.02
LSM2-212ENST00000477182 EIF4G3O43432 1585 aaKnown RBP21.42■■□□□ 1.02
LSM2-212ENST00000477182 RSF1Q96T23 1441 aaPredicted RBP21.42■■□□□ 1.02
LSM2-212ENST00000477182 CHD1O14646 1710 aa21.4■■□□□ 1.02
LSM2-212ENST00000477182 TOPBP1Q92547 1522 aa21.39■■□□□ 1.01
LSM2-212ENST00000477182 ABCC8Q09428 1581 aa21.37■■□□□ 1.01
LSM2-212ENST00000477182 FBLN2P98095 1184 aa21.31■■□□□ 1
LSM2-212ENST00000477182 AQRO60306 1485 aaKnown RBP eCLIP21.28■■□□□ 18e-8■■■■□ 24.4
LSM2-212ENST00000477182 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
LSM2-212ENST00000477182 TARBP1Q13395 1621 aaKnown RBP21.24■□□□□ 0.99
LSM2-212ENST00000477182 CCDC88BA6NC98 1476 aa21.18■□□□□ 0.98
LSM2-212ENST00000477182 CLASP1Q7Z460 1538 aa21.14■□□□□ 0.97
LSM2-212ENST00000477182 POLA1P09884 1462 aaPredicted RBP21.11■□□□□ 0.97
LSM2-212ENST00000477182 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
LSM2-212ENST00000477182 CHMP7Q8WUX9 453 aaPredicted RBP21.07■□□□□ 0.96
LSM2-212ENST00000477182 SNAPC4Q5SXM2 1469 aa21.06■□□□□ 0.96
LSM2-212ENST00000477182 WDR97A6NE52 1622 aa21.05■□□□□ 0.96
LSM2-212ENST00000477182 TDRD9Q8NDG6 1382 aaKnown RBP21.04■□□□□ 0.96
LSM2-212ENST00000477182 SOGA1O94964 1423 aa21.03■□□□□ 0.96
LSM2-212ENST00000477182 MAGI1Q96QZ7 1491 aaPredicted RBP21.01■□□□□ 0.95
LSM2-212ENST00000477182 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
LSM2-212ENST00000477182 GAPVD1Q14C86 1478 aa20.98■□□□□ 0.95
LSM2-212ENST00000477182 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
LSM2-212ENST00000477182 GRIN2BQ13224 1484 aa20.94■□□□□ 0.94
LSM2-212ENST00000477182 FGD5Q6ZNL6 1462 aa20.88■□□□□ 0.93
LSM2-212ENST00000477182 PBRM1Q86U86 1689 aa20.79■□□□□ 0.92
LSM2-212ENST00000477182 CUX1P39880 1505 aa20.73■□□□□ 0.91
LSM2-212ENST00000477182 KIF13AQ9H1H9 1805 aa20.71■□□□□ 0.91
LSM2-212ENST00000477182 ERCC6L2Q5T890 1561 aa20.7■□□□□ 0.9
LSM2-212ENST00000477182 CEP170Q5SW79 1584 aa20.66■□□□□ 0.9
LSM2-212ENST00000477182 GRIN2AQ12879 1464 aa20.65■□□□□ 0.9
LSM2-212ENST00000477182 ILDR1Q86SU0 546 aaPredicted RBP20.65■□□□□ 0.9
LSM2-212ENST00000477182 ABCA5Q8WWZ7 1642 aa20.64■□□□□ 0.9
LSM2-212ENST00000477182 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
LSM2-212ENST00000477182 NUP160Q12769 1436 aa20.61■□□□□ 0.89
LSM2-212ENST00000477182 SHROOM2Q13796 1616 aa20.6■□□□□ 0.89
LSM2-212ENST00000477182 SUPT5HO00267 1087 aaKnown RBP20.56■□□□□ 0.88
LSM2-212ENST00000477182 KDM4FA0A1W2PPD8 638 aa20.54■□□□□ 0.88
LSM2-212ENST00000477182 FAM69CQ0P6D2 419 aa20.54■□□□□ 0.88
LSM2-212ENST00000477182 ABCC10Q5T3U5 1492 aa20.53■□□□□ 0.88
LSM2-212ENST00000477182 ADAMTS12P58397 1594 aa20.53■□□□□ 0.88
LSM2-212ENST00000477182 NPM1P06748 294 aaKnown RBP eCLIP20.49■□□□□ 0.87
LSM2-212ENST00000477182 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
LSM2-212ENST00000477182 KDM6BO15054 1643 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms