RNA–Protein interactions for RNA: ENST00000477132.1

PRKD3-209, Transcript of protein kinase D3, humanhuman

TSL 4

Gene PRKD3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD3-209ENST00000477132 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
PRKD3-209ENST00000477132 AEBP2Q6ZN18 517 aaPredicted RBP27.53■■■□□ 2
PRKD3-209ENST00000477132 CCDC180Q9P1Z9 1646 aa26.94■■□□□ 1.9
PRKD3-209ENST00000477132 ABCC9O60706 1549 aa26.44■■□□□ 1.82
PRKD3-209ENST00000477132 CHIC1Q5VXU3 224 aa25.84■■□□□ 1.73
PRKD3-209ENST00000477132 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
PRKD3-209ENST00000477132 NACADO15069 1562 aa25.3■■□□□ 1.64
PRKD3-209ENST00000477132 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
PRKD3-209ENST00000477132 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
PRKD3-209ENST00000477132 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
PRKD3-209ENST00000477132 DCAF1Q9Y4B6 1507 aa24.97■■□□□ 1.59
PRKD3-209ENST00000477132 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
PRKD3-209ENST00000477132 BICRAQ9NZM4 1560 aa24.68■■□□□ 1.54
PRKD3-209ENST00000477132 PABPN1Q86U42 306 aaKnown RBP eCLIP24.65■■□□□ 1.54
PRKD3-209ENST00000477132 SCRIBQ14160 1630 aa24.6■■□□□ 1.53
PRKD3-209ENST00000477132 DNAJC5BQ9UF47 199 aa24.37■■□□□ 1.49
PRKD3-209ENST00000477132 SHROOM4Q9ULL8 1493 aa24.3■■□□□ 1.48
PRKD3-209ENST00000477132 EIF4G1Q04637 1599 aaKnown RBP24■■□□□ 1.43
PRKD3-209ENST00000477132 CC2D2AQ9P2K1 1620 aa23.94■■□□□ 1.42
PRKD3-209ENST00000477132 CECR2Q9BXF3 1484 aa23.74■■□□□ 1.39
PRKD3-209ENST00000477132 SMARCA4P51532 1647 aa23.5■■□□□ 1.35
PRKD3-209ENST00000477132 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
PRKD3-209ENST00000477132 SENP3Q9H4L4 574 aaPredicted RBP23.36■■□□□ 1.33
PRKD3-209ENST00000477132 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
PRKD3-209ENST00000477132 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
PRKD3-209ENST00000477132 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
PRKD3-209ENST00000477132 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
PRKD3-209ENST00000477132 PEG3Q9GZU2 1588 aa23.26■■□□□ 1.31
PRKD3-209ENST00000477132 HMGXB3Q12766 1538 aa23.24■■□□□ 1.31
PRKD3-209ENST00000477132 BAZ1BQ9UIG0 1483 aaKnown RBP23.15■■□□□ 1.3
PRKD3-209ENST00000477132 PHF23Q9BUL5 403 aaPredicted RBP23.1■■□□□ 1.29
PRKD3-209ENST00000477132 WIZO95785 1651 aa23.09■■□□□ 1.29
PRKD3-209ENST00000477132 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
PRKD3-209ENST00000477132 NESP48681 1621 aa22.88■■□□□ 1.25
PRKD3-209ENST00000477132 TOP2AP11388 1531 aaKnown RBP22.79■■□□□ 1.24
PRKD3-209ENST00000477132 LAMC3Q9Y6N6 1575 aa22.76■■□□□ 1.23
PRKD3-209ENST00000477132 ERCC6Q03468 1493 aa22.74■■□□□ 1.23
PRKD3-209ENST00000477132 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
PRKD3-209ENST00000477132 CADPSQ9ULU8 1353 aa22.63■■□□□ 1.21
PRKD3-209ENST00000477132 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
PRKD3-209ENST00000477132 CUX2O14529 1486 aa22.55■■□□□ 1.2
PRKD3-209ENST00000477132 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
PRKD3-209ENST00000477132 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
PRKD3-209ENST00000477132 CFTRP13569 1480 aa22.51■■□□□ 1.19
PRKD3-209ENST00000477132 PRDM2Q13029 1718 aa22.43■■□□□ 1.18
PRKD3-209ENST00000477132 FANCD2Q9BXW9 1451 aa22.41■■□□□ 1.18
PRKD3-209ENST00000477132 MRC2Q9UBG0 1479 aa22.38■■□□□ 1.17
PRKD3-209ENST00000477132 CEP164Q9UPV0 1460 aa22.38■■□□□ 1.17
PRKD3-209ENST00000477132 WDR62O43379 1518 aa22.35■■□□□ 1.17
PRKD3-209ENST00000477132 SUPT5HO00267 1087 aaKnown RBP22.25■■□□□ 1.15
PRKD3-209ENST00000477132 URB2Q14146 1524 aaKnown RBP22.23■■□□□ 1.15
PRKD3-209ENST00000477132 TOPBP1Q92547 1522 aa22.06■■□□□ 1.12
PRKD3-209ENST00000477132 DNMBPQ6XZF7 1577 aa22.03■■□□□ 1.12
PRKD3-209ENST00000477132 ABCC8Q09428 1581 aa21.97■■□□□ 1.11
PRKD3-209ENST00000477132 DNAJC5Q9H3Z4 198 aa21.95■■□□□ 1.1
PRKD3-209ENST00000477132 IFT140Q96RY7 1462 aa21.9■■□□□ 1.1
PRKD3-209ENST00000477132 FOXD1Q16676 465 aa21.9■■□□□ 1.1
PRKD3-209ENST00000477132 CUX1P39880 1505 aa21.88■■□□□ 1.09
PRKD3-209ENST00000477132 ZNF608Q9ULD9 1512 aaPredicted RBP21.88■■□□□ 1.09
PRKD3-209ENST00000477132 TARBP1Q13395 1621 aaKnown RBP21.87■■□□□ 1.09
PRKD3-209ENST00000477132 POLA1P09884 1462 aaPredicted RBP21.86■■□□□ 1.09
PRKD3-209ENST00000477132 EIF4G3O43432 1585 aaKnown RBP21.81■■□□□ 1.08
PRKD3-209ENST00000477132 FGD5Q6ZNL6 1462 aa21.8■■□□□ 1.08
PRKD3-209ENST00000477132 RAD54L2Q9Y4B4 1467 aa21.78■■□□□ 1.08
PRKD3-209ENST00000477132 SOGA1O94964 1423 aa21.72■■□□□ 1.07
PRKD3-209ENST00000477132 WDR97A6NE52 1622 aa21.71■■□□□ 1.07
PRKD3-209ENST00000477132 AQRO60306 1485 aaKnown RBP eCLIP21.71■■□□□ 1.07
PRKD3-209ENST00000477132 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
PRKD3-209ENST00000477132 BIVM-ERCC5R4GMW8 1640 aa21.68■■□□□ 1.06
PRKD3-209ENST00000477132 TOP2BQ02880 1626 aa21.65■■□□□ 1.06
PRKD3-209ENST00000477132 WRNQ14191 1432 aaPredicted RBP eCLIP21.64■■□□□ 1.06
PRKD3-209ENST00000477132 TDRD9Q8NDG6 1382 aaKnown RBP21.63■■□□□ 1.05
PRKD3-209ENST00000477132 CHD1O14646 1710 aa21.59■■□□□ 1.05
PRKD3-209ENST00000477132 ABCA10Q8WWZ4 1543 aa21.56■■□□□ 1.04
PRKD3-209ENST00000477132 ABCA5Q8WWZ7 1642 aa21.55■■□□□ 1.04
PRKD3-209ENST00000477132 PBRM1Q86U86 1689 aa21.55■■□□□ 1.04
PRKD3-209ENST00000477132 OSCARQ8IYS5 282 aa21.53■■□□□ 1.04
PRKD3-209ENST00000477132 SNAPC4Q5SXM2 1469 aa21.52■■□□□ 1.04
PRKD3-209ENST00000477132 GRIN2BQ13224 1484 aa21.49■■□□□ 1.03
PRKD3-209ENST00000477132 GAPVD1Q14C86 1478 aa21.49■■□□□ 1.03
PRKD3-209ENST00000477132 MAGI1Q96QZ7 1491 aaPredicted RBP21.45■■□□□ 1.03
PRKD3-209ENST00000477132 FBLN2P98095 1184 aa21.39■■□□□ 1.01
PRKD3-209ENST00000477132 SYNJ2O15056 1496 aa21.38■■□□□ 1.01
PRKD3-209ENST00000477132 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
PRKD3-209ENST00000477132 RIMBP3CA6NJZ7 1639 aa21.34■■□□□ 1.01
PRKD3-209ENST00000477132 RIMBP3BA6NNM3 1639 aa21.34■■□□□ 1.01
PRKD3-209ENST00000477132 RIMBP3Q9UFD9 1639 aa21.34■■□□□ 1.01
PRKD3-209ENST00000477132 CLASP1Q7Z460 1538 aa21.31■■□□□ 1
PRKD3-209ENST00000477132 CHMP7Q8WUX9 453 aaPredicted RBP21.3■■□□□ 1
PRKD3-209ENST00000477132 ARHGEF11O15085 1522 aa21.29■■□□□ 1
PRKD3-209ENST00000477132 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
PRKD3-209ENST00000477132 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
PRKD3-209ENST00000477132 FHAD1B1AJZ9 1412 aa21.21■□□□□ 0.99
PRKD3-209ENST00000477132 CEP170Q5SW79 1584 aa21.2■□□□□ 0.98
PRKD3-209ENST00000477132 TRIM41Q8WV44 630 aa21.19■□□□□ 0.98
PRKD3-209ENST00000477132 KIF27Q86VH2 1401 aa21.16■□□□□ 0.98
PRKD3-209ENST00000477132 NUP160Q12769 1436 aa21.15■□□□□ 0.98
PRKD3-209ENST00000477132 ARAP1Q96P48 1450 aa21.13■□□□□ 0.97
PRKD3-209ENST00000477132 CUL7Q14999 1698 aa21.12■□□□□ 0.97
PRKD3-209ENST00000477132 IGF1RP08069 1367 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms