RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 NISCHQ9Y2I1 1504 aa27.67■■■□□ 2.02
PTPRN-213ENST00000476930 CCDC180Q9P1Z9 1646 aa24.75■■□□□ 1.55
PTPRN-213ENST00000476930 ABCC9O60706 1549 aa24.51■■□□□ 1.51
PTPRN-213ENST00000476930 RB1CC1Q8TDY2 1594 aa23.41■■□□□ 1.34
PTPRN-213ENST00000476930 NACADO15069 1562 aa23.3■■□□□ 1.32
PTPRN-213ENST00000476930 DCAF8L2P0C7V8 631 aa23.26■■□□□ 1.31
PTPRN-213ENST00000476930 UNC13AQ9UPW8 1703 aa23.03■■□□□ 1.28
PTPRN-213ENST00000476930 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
PTPRN-213ENST00000476930 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
PTPRN-213ENST00000476930 PABPN1Q86U42 306 aaKnown RBP eCLIP22.85■■□□□ 1.25
PTPRN-213ENST00000476930 DCAF1Q9Y4B6 1507 aa22.84■■□□□ 1.25
PTPRN-213ENST00000476930 DNAJC5BQ9UF47 199 aa22.78■■□□□ 1.24
PTPRN-213ENST00000476930 BICRAQ9NZM4 1560 aa22.76■■□□□ 1.23
PTPRN-213ENST00000476930 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
PTPRN-213ENST00000476930 SHROOM4Q9ULL8 1493 aa22.37■■□□□ 1.17
PTPRN-213ENST00000476930 CC2D2AQ9P2K1 1620 aa22.17■■□□□ 1.14
PTPRN-213ENST00000476930 EIF4G1Q04637 1599 aaKnown RBP22.16■■□□□ 1.14
PTPRN-213ENST00000476930 CECR2Q9BXF3 1484 aa22.02■■□□□ 1.12
PTPRN-213ENST00000476930 SMARCA4P51532 1647 aa21.56■■□□□ 1.04
PTPRN-213ENST00000476930 NCAPD3P42695 1498 aa21.5■■□□□ 1.03
PTPRN-213ENST00000476930 ATAD2BQ9ULI0 1458 aa21.49■■□□□ 1.03
PTPRN-213ENST00000476930 BAZ1AQ9NRL2 1556 aaPredicted RBP21.44■■□□□ 1.02
PTPRN-213ENST00000476930 SMARCA2P51531 1590 aa21.43■■□□□ 1.02
PTPRN-213ENST00000476930 HMGXB3Q12766 1538 aa21.36■■□□□ 1.01
PTPRN-213ENST00000476930 MROH2BQ7Z745 1585 aa21.35■■□□□ 1.01
PTPRN-213ENST00000476930 PEG3Q9GZU2 1588 aa21.32■■□□□ 1
PTPRN-213ENST00000476930 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
PTPRN-213ENST00000476930 WIZO95785 1651 aa21.15■□□□□ 0.98
PTPRN-213ENST00000476930 NESP48681 1621 aa21.14■□□□□ 0.97
PTPRN-213ENST00000476930 ERCC6Q03468 1493 aa21.1■□□□□ 0.97
PTPRN-213ENST00000476930 LAMC3Q9Y6N6 1575 aa20.99■□□□□ 0.95
PTPRN-213ENST00000476930 RSF1Q96T23 1441 aaPredicted RBP20.97■□□□□ 0.95
PTPRN-213ENST00000476930 CUX2O14529 1486 aa20.95■□□□□ 0.94
PTPRN-213ENST00000476930 KIF21AQ7Z4S6 1674 aa20.93■□□□□ 0.94
PTPRN-213ENST00000476930 THOC2Q8NI27 1593 aaKnown RBP20.87■□□□□ 0.93
PTPRN-213ENST00000476930 CADPSQ9ULU8 1353 aa20.85■□□□□ 0.93
PTPRN-213ENST00000476930 TOP2AP11388 1531 aaKnown RBP20.83■□□□□ 0.93
PTPRN-213ENST00000476930 PDS5BQ9NTI5 1447 aa20.83■□□□□ 0.93
PTPRN-213ENST00000476930 DNAJC5Q9H3Z4 198 aa20.68■□□□□ 0.9
PTPRN-213ENST00000476930 CFTRP13569 1480 aa20.68■□□□□ 0.9
PTPRN-213ENST00000476930 MRC2Q9UBG0 1479 aa20.65■□□□□ 0.9
PTPRN-213ENST00000476930 FANCD2Q9BXW9 1451 aa20.63■□□□□ 0.89
PTPRN-213ENST00000476930 CEP164Q9UPV0 1460 aa20.62■□□□□ 0.89
PTPRN-213ENST00000476930 PRDM2Q13029 1718 aa20.61■□□□□ 0.89
PTPRN-213ENST00000476930 WDR62O43379 1518 aa20.61■□□□□ 0.89
PTPRN-213ENST00000476930 CCDC88BA6NC98 1476 aa20.61■□□□□ 0.89
PTPRN-213ENST00000476930 URB2Q14146 1524 aaKnown RBP20.47■□□□□ 0.87
PTPRN-213ENST00000476930 TOPBP1Q92547 1522 aa20.28■□□□□ 0.84
PTPRN-213ENST00000476930 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
PTPRN-213ENST00000476930 DNMBPQ6XZF7 1577 aa20.23■□□□□ 0.83
PTPRN-213ENST00000476930 ABCC8Q09428 1581 aa20.21■□□□□ 0.83
PTPRN-213ENST00000476930 IFT140Q96RY7 1462 aa20.19■□□□□ 0.82
PTPRN-213ENST00000476930 ZNF608Q9ULD9 1512 aaPredicted RBP20.18■□□□□ 0.82
PTPRN-213ENST00000476930 TARBP1Q13395 1621 aaKnown RBP20.12■□□□□ 0.81
PTPRN-213ENST00000476930 EIF4G3O43432 1585 aaKnown RBP20.09■□□□□ 0.81
PTPRN-213ENST00000476930 POLA1P09884 1462 aaPredicted RBP20.09■□□□□ 0.81
PTPRN-213ENST00000476930 OSCARQ8IYS5 282 aa20.05■□□□□ 0.8
PTPRN-213ENST00000476930 CUX1P39880 1505 aa20.04■□□□□ 0.8
PTPRN-213ENST00000476930 AQRO60306 1485 aaKnown RBP eCLIP20.03■□□□□ 0.8
PTPRN-213ENST00000476930 RAD54L2Q9Y4B4 1467 aa20.03■□□□□ 0.8
PTPRN-213ENST00000476930 FGD5Q6ZNL6 1462 aa20■□□□□ 0.79
PTPRN-213ENST00000476930 SOGA1O94964 1423 aa19.99■□□□□ 0.79
PTPRN-213ENST00000476930 CHD1O14646 1710 aa19.96■□□□□ 0.79
PTPRN-213ENST00000476930 TDRD9Q8NDG6 1382 aaKnown RBP19.93■□□□□ 0.78
PTPRN-213ENST00000476930 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
PTPRN-213ENST00000476930 WDR97A6NE52 1622 aa19.9■□□□□ 0.78
PTPRN-213ENST00000476930 RIMBP3CA6NJZ7 1639 aa19.84■□□□□ 0.77
PTPRN-213ENST00000476930 RIMBP3BA6NNM3 1639 aa19.84■□□□□ 0.77
PTPRN-213ENST00000476930 RIMBP3Q9UFD9 1639 aa19.84■□□□□ 0.77
PTPRN-213ENST00000476930 FBLN2P98095 1184 aa19.83■□□□□ 0.77
PTPRN-213ENST00000476930 PBRM1Q86U86 1689 aa19.81■□□□□ 0.76
PTPRN-213ENST00000476930 SNAPC4Q5SXM2 1469 aa19.81■□□□□ 0.76
PTPRN-213ENST00000476930 BIVM-ERCC5R4GMW8 1640 aa19.8■□□□□ 0.76
PTPRN-213ENST00000476930 SYNJ1O43426 1573 aa19.79■□□□□ 0.76
PTPRN-213ENST00000476930 TOP2BQ02880 1626 aa19.79■□□□□ 0.76
PTPRN-213ENST00000476930 GRIN2BQ13224 1484 aa19.78■□□□□ 0.76
PTPRN-213ENST00000476930 ABCA10Q8WWZ4 1543 aa19.77■□□□□ 0.76
PTPRN-213ENST00000476930 WRNQ14191 1432 aaPredicted RBP eCLIP19.76■□□□□ 0.75
PTPRN-213ENST00000476930 ABCA5Q8WWZ7 1642 aa19.76■□□□□ 0.75
PTPRN-213ENST00000476930 ARHGEF11O15085 1522 aa19.76■□□□□ 0.75
PTPRN-213ENST00000476930 GAPVD1Q14C86 1478 aa19.75■□□□□ 0.75
PTPRN-213ENST00000476930 MAGI1Q96QZ7 1491 aaPredicted RBP19.74■□□□□ 0.75
PTPRN-213ENST00000476930 CHMP7Q8WUX9 453 aaPredicted RBP19.7■□□□□ 0.74
PTPRN-213ENST00000476930 SYNJ2O15056 1496 aa19.68■□□□□ 0.74
PTPRN-213ENST00000476930 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
PTPRN-213ENST00000476930 CYB5RLQ6IPT4 315 aa19.6■□□□□ 0.73
PTPRN-213ENST00000476930 ARAP1Q96P48 1450 aa19.59■□□□□ 0.73
PTPRN-213ENST00000476930 ADAMTS12P58397 1594 aa19.58■□□□□ 0.73
PTPRN-213ENST00000476930 AEBP2Q6ZN18 517 aaPredicted RBP19.56■□□□□ 0.72
PTPRN-213ENST00000476930 GRIN2AQ12879 1464 aa19.54■□□□□ 0.72
PTPRN-213ENST00000476930 ERICH3Q5RHP9 1530 aa19.53■□□□□ 0.72
PTPRN-213ENST00000476930 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
PTPRN-213ENST00000476930 FHAD1B1AJZ9 1412 aa19.5■□□□□ 0.71
PTPRN-213ENST00000476930 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
PTPRN-213ENST00000476930 NUP160Q12769 1436 aa19.45■□□□□ 0.7
PTPRN-213ENST00000476930 ERCC6L2Q5T890 1561 aa19.41■□□□□ 0.7
PTPRN-213ENST00000476930 SHROOM2Q13796 1616 aa19.38■□□□□ 0.69
PTPRN-213ENST00000476930 KIF27Q86VH2 1401 aa19.35■□□□□ 0.69
PTPRN-213ENST00000476930 IGF1RP08069 1367 aa19.34■□□□□ 0.69
PTPRN-213ENST00000476930 CUL7Q14999 1698 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms