RNA–Protein interactions for RNA: ENST00000476126.1

SP140-209, Transcript of SP140 nuclear body protein, humanhuman

TSL 3

Gene SP140, Length 463 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-209ENST00000476126 NISCHQ9Y2I1 1504 aa17.08■□□□□ 0.32
SP140-209ENST00000476126 CCDC180Q9P1Z9 1646 aa15.39■□□□□ 0.05
SP140-209ENST00000476126 ABCC9O60706 1549 aa15.09■□□□□ 0.01
SP140-209ENST00000476126 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
SP140-209ENST00000476126 NACADO15069 1562 aa14.4□□□□□ -0.1
SP140-209ENST00000476126 DCAF8L2P0C7V8 631 aa14.32□□□□□ -0.12
SP140-209ENST00000476126 UNC13AQ9UPW8 1703 aa14.3□□□□□ -0.12
SP140-209ENST00000476126 MYO15BQ96JP2 1530 aa14.21□□□□□ -0.13
SP140-209ENST00000476126 ZCCHC6Q5VYS8 1495 aaKnown RBP14.21□□□□□ -0.13
SP140-209ENST00000476126 DCAF1Q9Y4B6 1507 aa14.11□□□□□ -0.15
SP140-209ENST00000476126 BICRAQ9NZM4 1560 aa14.02□□□□□ -0.16
SP140-209ENST00000476126 SCRIBQ14160 1630 aa14.01□□□□□ -0.17
SP140-209ENST00000476126 PABPN1Q86U42 306 aaKnown RBP eCLIP14□□□□□ -0.17
SP140-209ENST00000476126 AEBP2Q6ZN18 517 aaPredicted RBP13.99□□□□□ -0.17
SP140-209ENST00000476126 SHROOM4Q9ULL8 1493 aa13.86□□□□□ -0.19
SP140-209ENST00000476126 DNAJC5BQ9UF47 199 aa13.83□□□□□ -0.2
SP140-209ENST00000476126 EIF4G1Q04637 1599 aaKnown RBP13.69□□□□□ -0.22
SP140-209ENST00000476126 CC2D2AQ9P2K1 1620 aa13.68□□□□□ -0.22
SP140-209ENST00000476126 CECR2Q9BXF3 1484 aa13.55□□□□□ -0.24
SP140-209ENST00000476126 CHIC1Q5VXU3 224 aa13.43□□□□□ -0.26
SP140-209ENST00000476126 SMARCA4P51532 1647 aa13.36□□□□□ -0.27
SP140-209ENST00000476126 BAZ1AQ9NRL2 1556 aaPredicted RBP13.3□□□□□ -0.28
SP140-209ENST00000476126 SMARCA2P51531 1590 aa13.27□□□□□ -0.29
SP140-209ENST00000476126 HMGXB3Q12766 1538 aa13.23□□□□□ -0.29
SP140-209ENST00000476126 ATAD2BQ9ULI0 1458 aa13.23□□□□□ -0.29
SP140-209ENST00000476126 NCAPD3P42695 1498 aa13.21□□□□□ -0.3
SP140-209ENST00000476126 PEG3Q9GZU2 1588 aa13.18□□□□□ -0.3
SP140-209ENST00000476126 BAZ1BQ9UIG0 1483 aaKnown RBP13.17□□□□□ -0.3
SP140-209ENST00000476126 MROH2BQ7Z745 1585 aa13.16□□□□□ -0.3
SP140-209ENST00000476126 WIZO95785 1651 aa13.1□□□□□ -0.31
SP140-209ENST00000476126 ERCC6Q03468 1493 aa13.05□□□□□ -0.32
SP140-209ENST00000476126 LAMC3Q9Y6N6 1575 aa13.01□□□□□ -0.33
SP140-209ENST00000476126 NESP48681 1621 aa13□□□□□ -0.33
SP140-209ENST00000476126 KIF21AQ7Z4S6 1674 aa12.99□□□□□ -0.33
SP140-209ENST00000476126 CUX2O14529 1486 aa12.92□□□□□ -0.34
SP140-209ENST00000476126 THOC2Q8NI27 1593 aaKnown RBP12.91□□□□□ -0.34
SP140-209ENST00000476126 RSF1Q96T23 1441 aaPredicted RBP12.91□□□□□ -0.34
SP140-209ENST00000476126 TOP2AP11388 1531 aaKnown RBP12.91□□□□□ -0.34
SP140-209ENST00000476126 PRDM2Q13029 1718 aa12.89□□□□□ -0.35
SP140-209ENST00000476126 PDS5BQ9NTI5 1447 aa12.85□□□□□ -0.35
SP140-209ENST00000476126 CADPSQ9ULU8 1353 aa12.82□□□□□ -0.36
SP140-209ENST00000476126 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
SP140-209ENST00000476126 MRC2Q9UBG0 1479 aa12.76□□□□□ -0.37
SP140-209ENST00000476126 WDR62O43379 1518 aa12.73□□□□□ -0.37
SP140-209ENST00000476126 CFTRP13569 1480 aa12.73□□□□□ -0.37
SP140-209ENST00000476126 FANCD2Q9BXW9 1451 aa12.73□□□□□ -0.37
SP140-209ENST00000476126 CCDC88BA6NC98 1476 aa12.69□□□□□ -0.38
SP140-209ENST00000476126 URB2Q14146 1524 aaKnown RBP12.61□□□□□ -0.39
SP140-209ENST00000476126 DNAJC5Q9H3Z4 198 aa12.59□□□□□ -0.39
SP140-209ENST00000476126 DNMBPQ6XZF7 1577 aa12.54□□□□□ -0.4
SP140-209ENST00000476126 TOPBP1Q92547 1522 aa12.52□□□□□ -0.4
SP140-209ENST00000476126 ABCC8Q09428 1581 aa12.52□□□□□ -0.41
SP140-209ENST00000476126 SUPT5HO00267 1087 aaKnown RBP12.5□□□□□ -0.41
SP140-209ENST00000476126 EIF4G3O43432 1585 aaKnown RBP12.47□□□□□ -0.41
SP140-209ENST00000476126 IFT140Q96RY7 1462 aa12.46□□□□□ -0.41
SP140-209ENST00000476126 TARBP1Q13395 1621 aaKnown RBP12.43□□□□□ -0.42
SP140-209ENST00000476126 ZNF608Q9ULD9 1512 aaPredicted RBP12.42□□□□□ -0.42
SP140-209ENST00000476126 CHD1O14646 1710 aa12.4□□□□□ -0.42
SP140-209ENST00000476126 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.43
SP140-209ENST00000476126 CUX1P39880 1505 aa12.37□□□□□ -0.43
SP140-209ENST00000476126 WDR97A6NE52 1622 aa12.37□□□□□ -0.43
SP140-209ENST00000476126 FGD5Q6ZNL6 1462 aa12.37□□□□□ -0.43
SP140-209ENST00000476126 PBRM1Q86U86 1689 aa12.35□□□□□ -0.43
SP140-209ENST00000476126 RAD54L2Q9Y4B4 1467 aa12.34□□□□□ -0.43
SP140-209ENST00000476126 SOGA1O94964 1423 aa12.31□□□□□ -0.44
SP140-209ENST00000476126 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
SP140-209ENST00000476126 AQRO60306 1485 aaKnown RBP eCLIP12.31□□□□□ -0.44
SP140-209ENST00000476126 OSCARQ8IYS5 282 aa12.29□□□□□ -0.44
SP140-209ENST00000476126 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
SP140-209ENST00000476126 SYNJ1O43426 1573 aa12.26□□□□□ -0.45
SP140-209ENST00000476126 RIMBP3CA6NJZ7 1639 aa12.26□□□□□ -0.45
SP140-209ENST00000476126 RIMBP3BA6NNM3 1639 aa12.26□□□□□ -0.45
SP140-209ENST00000476126 RIMBP3Q9UFD9 1639 aa12.26□□□□□ -0.45
SP140-209ENST00000476126 TDRD9Q8NDG6 1382 aaKnown RBP12.25□□□□□ -0.45
SP140-209ENST00000476126 SNAPC4Q5SXM2 1469 aa12.25□□□□□ -0.45
SP140-209ENST00000476126 ABCA5Q8WWZ7 1642 aa12.25□□□□□ -0.45
SP140-209ENST00000476126 WRNQ14191 1432 aaPredicted RBP eCLIP12.22□□□□□ -0.45
SP140-209ENST00000476126 TRIM41Q8WV44 630 aa12.22□□□□□ -0.45
SP140-209ENST00000476126 GRIN2BQ13224 1484 aa12.21□□□□□ -0.45
SP140-209ENST00000476126 MAGI1Q96QZ7 1491 aaPredicted RBP12.21□□□□□ -0.45
SP140-209ENST00000476126 FBLN2P98095 1184 aa12.21□□□□□ -0.45
SP140-209ENST00000476126 ABCA10Q8WWZ4 1543 aa12.21□□□□□ -0.46
SP140-209ENST00000476126 GAPVD1Q14C86 1478 aa12.2□□□□□ -0.46
SP140-209ENST00000476126 ARHGEF11O15085 1522 aa12.18□□□□□ -0.46
SP140-209ENST00000476126 SYNJ2O15056 1496 aa12.16□□□□□ -0.46
SP140-209ENST00000476126 ADAMTS12P58397 1594 aa12.15□□□□□ -0.46
SP140-209ENST00000476126 CLASP1Q7Z460 1538 aa12.13□□□□□ -0.47
SP140-209ENST00000476126 CHMP7Q8WUX9 453 aaPredicted RBP12.13□□□□□ -0.47
SP140-209ENST00000476126 ERICH3Q5RHP9 1530 aa12.09□□□□□ -0.47
SP140-209ENST00000476126 GRIN2AQ12879 1464 aa12.08□□□□□ -0.48
SP140-209ENST00000476126 CEP170Q5SW79 1584 aa12.05□□□□□ -0.48
SP140-209ENST00000476126 ARAP1Q96P48 1450 aa12.05□□□□□ -0.48
SP140-209ENST00000476126 CUL7Q14999 1698 aa12.04□□□□□ -0.48
SP140-209ENST00000476126 FHAD1B1AJZ9 1412 aa12.03□□□□□ -0.48
SP140-209ENST00000476126 SENP3Q9H4L4 574 aaPredicted RBP12.03□□□□□ -0.48
SP140-209ENST00000476126 CYB5RLQ6IPT4 315 aa12□□□□□ -0.49
SP140-209ENST00000476126 SHROOM2Q13796 1616 aa12□□□□□ -0.49
SP140-209ENST00000476126 RUSC2Q8N2Y8 1516 aa11.98□□□□□ -0.49
SP140-209ENST00000476126 NUP160Q12769 1436 aa11.98□□□□□ -0.49
SP140-209ENST00000476126 KIF27Q86VH2 1401 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms