RNA–Protein interactions for RNA: ENST00000476018.2

VSTM4-203, Transcript of V-set and transmembrane domain containing 4, humanhuman

TSL 5

Gene VSTM4, Length 659 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-203ENST00000476018 NISCHQ9Y2I1 1504 aa32.32■■■□□ 2.76
VSTM4-203ENST00000476018 AEBP2Q6ZN18 517 aaPredicted RBP31.49■■■□□ 2.63
VSTM4-203ENST00000476018 CHIC1Q5VXU3 224 aa30■■■□□ 2.39
VSTM4-203ENST00000476018 CCDC180Q9P1Z9 1646 aa29.06■■■□□ 2.24
VSTM4-203ENST00000476018 ABCC9O60706 1549 aa28.97■■■□□ 2.23
VSTM4-203ENST00000476018 RB1CC1Q8TDY2 1594 aa27.65■■■□□ 2.02
VSTM4-203ENST00000476018 NACADO15069 1562 aa27.47■■□□□ 1.99
VSTM4-203ENST00000476018 DCAF8L2P0C7V8 631 aa27.24■■□□□ 1.95
VSTM4-203ENST00000476018 MYO15BQ96JP2 1530 aa27.11■■□□□ 1.93
VSTM4-203ENST00000476018 DNAJC5BQ9UF47 199 aa27.08■■□□□ 1.93
VSTM4-203ENST00000476018 UNC13AQ9UPW8 1703 aa26.95■■□□□ 1.9
VSTM4-203ENST00000476018 PABPN1Q86U42 306 aaKnown RBP eCLIP26.94■■□□□ 1.9
VSTM4-203ENST00000476018 SENP3Q9H4L4 574 aaPredicted RBP26.81■■□□□ 1.88
VSTM4-203ENST00000476018 ZCCHC6Q5VYS8 1495 aaKnown RBP26.81■■□□□ 1.88
VSTM4-203ENST00000476018 BICRAQ9NZM4 1560 aa26.77■■□□□ 1.88
VSTM4-203ENST00000476018 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
VSTM4-203ENST00000476018 SHROOM4Q9ULL8 1493 aa26.55■■□□□ 1.84
VSTM4-203ENST00000476018 PHF23Q9BUL5 403 aaPredicted RBP26.53■■□□□ 1.84
VSTM4-203ENST00000476018 SCRIBQ14160 1630 aa26.42■■□□□ 1.82
VSTM4-203ENST00000476018 CC2D2AQ9P2K1 1620 aa26.19■■□□□ 1.78
VSTM4-203ENST00000476018 EIF4G1Q04637 1599 aaKnown RBP26.16■■□□□ 1.78
VSTM4-203ENST00000476018 CECR2Q9BXF3 1484 aa26.13■■□□□ 1.77
VSTM4-203ENST00000476018 NCAPD3P42695 1498 aa25.33■■□□□ 1.65
VSTM4-203ENST00000476018 ATAD2BQ9ULI0 1458 aa25.24■■□□□ 1.63
VSTM4-203ENST00000476018 SMARCA4P51532 1647 aa25.23■■□□□ 1.63
VSTM4-203ENST00000476018 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
VSTM4-203ENST00000476018 HMGXB3Q12766 1538 aa25.17■■□□□ 1.62
VSTM4-203ENST00000476018 BAZ1AQ9NRL2 1556 aaPredicted RBP25.14■■□□□ 1.61
VSTM4-203ENST00000476018 ERCC6Q03468 1493 aa25.08■■□□□ 1.6
VSTM4-203ENST00000476018 CUX2O14529 1486 aa25.05■■□□□ 1.6
VSTM4-203ENST00000476018 BAZ1BQ9UIG0 1483 aaKnown RBP25.02■■□□□ 1.6
VSTM4-203ENST00000476018 FOXD1Q16676 465 aa25.01■■□□□ 1.59
VSTM4-203ENST00000476018 PEG3Q9GZU2 1588 aa25■■□□□ 1.59
VSTM4-203ENST00000476018 DNAJC5Q9H3Z4 198 aa24.95■■□□□ 1.58
VSTM4-203ENST00000476018 MROH2BQ7Z745 1585 aa24.87■■□□□ 1.57
VSTM4-203ENST00000476018 NESP48681 1621 aa24.86■■□□□ 1.57
VSTM4-203ENST00000476018 LAMC3Q9Y6N6 1575 aa24.79■■□□□ 1.56
VSTM4-203ENST00000476018 THOC2Q8NI27 1593 aaKnown RBP24.67■■□□□ 1.54
VSTM4-203ENST00000476018 PDS5BQ9NTI5 1447 aa24.65■■□□□ 1.54
VSTM4-203ENST00000476018 KIF21AQ7Z4S6 1674 aa24.58■■□□□ 1.53
VSTM4-203ENST00000476018 WIZO95785 1651 aa24.57■■□□□ 1.52
VSTM4-203ENST00000476018 CADPSQ9ULU8 1353 aa24.55■■□□□ 1.52
VSTM4-203ENST00000476018 MRC2Q9UBG0 1479 aa24.42■■□□□ 1.5
VSTM4-203ENST00000476018 RSF1Q96T23 1441 aaPredicted RBP24.37■■□□□ 1.49
VSTM4-203ENST00000476018 WDR62O43379 1518 aa24.35■■□□□ 1.49
VSTM4-203ENST00000476018 CEP164Q9UPV0 1460 aa24.33■■□□□ 1.49
VSTM4-203ENST00000476018 TOP2AP11388 1531 aaKnown RBP24.32■■□□□ 1.48
VSTM4-203ENST00000476018 CFTRP13569 1480 aa24.28■■□□□ 1.48
VSTM4-203ENST00000476018 FANCD2Q9BXW9 1451 aa24.27■■□□□ 1.48
VSTM4-203ENST00000476018 PRDM2Q13029 1718 aa24.07■■□□□ 1.44
VSTM4-203ENST00000476018 URB2Q14146 1524 aaKnown RBP24.05■■□□□ 1.44
VSTM4-203ENST00000476018 PLPPR3Q6T4P5 718 aa24.03■■□□□ 1.44
VSTM4-203ENST00000476018 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
VSTM4-203ENST00000476018 OSCARQ8IYS5 282 aa23.87■■□□□ 1.41
VSTM4-203ENST00000476018 TRIM41Q8WV44 630 aa23.85■■□□□ 1.41
VSTM4-203ENST00000476018 IFT140Q96RY7 1462 aa23.85■■□□□ 1.41
VSTM4-203ENST00000476018 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
VSTM4-203ENST00000476018 TOPBP1Q92547 1522 aa23.81■■□□□ 1.4
VSTM4-203ENST00000476018 DNMBPQ6XZF7 1577 aa23.75■■□□□ 1.39
VSTM4-203ENST00000476018 ZNF608Q9ULD9 1512 aaPredicted RBP23.74■■□□□ 1.39
VSTM4-203ENST00000476018 EIF4G3O43432 1585 aaKnown RBP23.65■■□□□ 1.38
VSTM4-203ENST00000476018 TARBP1Q13395 1621 aaKnown RBP23.59■■□□□ 1.37
VSTM4-203ENST00000476018 POLA1P09884 1462 aaPredicted RBP23.57■■□□□ 1.36
VSTM4-203ENST00000476018 RIMBP3CA6NJZ7 1639 aa23.54■■□□□ 1.36
VSTM4-203ENST00000476018 RIMBP3BA6NNM3 1639 aa23.54■■□□□ 1.36
VSTM4-203ENST00000476018 RIMBP3Q9UFD9 1639 aa23.54■■□□□ 1.36
VSTM4-203ENST00000476018 AQRO60306 1485 aaKnown RBP eCLIP23.53■■□□□ 1.36
VSTM4-203ENST00000476018 PPP6R1Q9UPN7 881 aa23.5■■□□□ 1.35
VSTM4-203ENST00000476018 ARHGEF11O15085 1522 aa23.48■■□□□ 1.35
VSTM4-203ENST00000476018 CHD1O14646 1710 aa23.45■■□□□ 1.34
VSTM4-203ENST00000476018 WDR97A6NE52 1622 aa23.45■■□□□ 1.34
VSTM4-203ENST00000476018 SOGA1O94964 1423 aa23.45■■□□□ 1.34
VSTM4-203ENST00000476018 RAD54L2Q9Y4B4 1467 aa23.44■■□□□ 1.34
VSTM4-203ENST00000476018 ADRA2BP18089 450 aa23.44■■□□□ 1.34
VSTM4-203ENST00000476018 FGD5Q6ZNL6 1462 aa23.42■■□□□ 1.34
VSTM4-203ENST00000476018 FBLN2P98095 1184 aa23.39■■□□□ 1.33
VSTM4-203ENST00000476018 PIAS4Q8N2W9 510 aaPredicted RBP23.39■■□□□ 1.33
VSTM4-203ENST00000476018 CUX1P39880 1505 aa23.38■■□□□ 1.33
VSTM4-203ENST00000476018 TDRD9Q8NDG6 1382 aaKnown RBP23.38■■□□□ 1.33
VSTM4-203ENST00000476018 SNAPC4Q5SXM2 1469 aa23.32■■□□□ 1.32
VSTM4-203ENST00000476018 MSH5O43196 834 aa23.32■■□□□ 1.32
VSTM4-203ENST00000476018 MAGI1Q96QZ7 1491 aaPredicted RBP23.3■■□□□ 1.32
VSTM4-203ENST00000476018 GRIN2BQ13224 1484 aa23.29■■□□□ 1.32
VSTM4-203ENST00000476018 CYB5RLQ6IPT4 315 aa23.27■■□□□ 1.32
VSTM4-203ENST00000476018 SUPT5HO00267 1087 aaKnown RBP23.26■■□□□ 1.31
VSTM4-203ENST00000476018 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
VSTM4-203ENST00000476018 ARAP1Q96P48 1450 aa23.24■■□□□ 1.31
VSTM4-203ENST00000476018 SYNJ1O43426 1573 aa23.23■■□□□ 1.31
VSTM4-203ENST00000476018 SYNJ2O15056 1496 aa23.21■■□□□ 1.31
VSTM4-203ENST00000476018 CLASP1Q7Z460 1538 aa23.2■■□□□ 1.3
VSTM4-203ENST00000476018 GAPVD1Q14C86 1478 aa23.19■■□□□ 1.3
VSTM4-203ENST00000476018 PBRM1Q86U86 1689 aa23.18■■□□□ 1.3
VSTM4-203ENST00000476018 ABCA10Q8WWZ4 1543 aa23.18■■□□□ 1.3
VSTM4-203ENST00000476018 ABCA5Q8WWZ7 1642 aa23.13■■□□□ 1.29
VSTM4-203ENST00000476018 WRNQ14191 1432 aaPredicted RBP eCLIP23.09■■□□□ 1.29
VSTM4-203ENST00000476018 TOP2BQ02880 1626 aa23.04■■□□□ 1.28
VSTM4-203ENST00000476018 BIVM-ERCC5R4GMW8 1640 aa23.04■■□□□ 1.28
VSTM4-203ENST00000476018 TRHP20396 242 aaPredicted RBP23.03■■□□□ 1.28
VSTM4-203ENST00000476018 GRIN2AQ12879 1464 aa22.98■■□□□ 1.27
VSTM4-203ENST00000476018 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms