RNA–Protein interactions for RNA: ENST00000475339.1

ATG9A-220, Transcript of autophagy related 9A, humanhuman

TSL 2

Gene ATG9A, Length 812 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG9A-220ENST00000475339 NISCHQ9Y2I1 1504 aa36.21■■■■□ 3.39
ATG9A-220ENST00000475339 ABCC9O60706 1549 aa33.98■■■■□ 3.03
ATG9A-220ENST00000475339 DNAJC5BQ9UF47 199 aa32.86■■■□□ 2.85
ATG9A-220ENST00000475339 CCDC180Q9P1Z9 1646 aa32.82■■■□□ 2.84
ATG9A-220ENST00000475339 RB1CC1Q8TDY2 1594 aa31.79■■■□□ 2.68
ATG9A-220ENST00000475339 PABPN1Q86U42 306 aaKnown RBP eCLIP31.55■■■□□ 2.64
ATG9A-220ENST00000475339 NACADO15069 1562 aa31.33■■■□□ 2.61
ATG9A-220ENST00000475339 DCAF8L2P0C7V8 631 aa31.16■■■□□ 2.58
ATG9A-220ENST00000475339 UNC13AQ9UPW8 1703 aa31.04■■■□□ 2.56
ATG9A-220ENST00000475339 BICRAQ9NZM4 1560 aa30.95■■■□□ 2.54
ATG9A-220ENST00000475339 DNAJC5Q9H3Z4 198 aa30.86■■■□□ 2.53
ATG9A-220ENST00000475339 CECR2Q9BXF3 1484 aa30.7■■■□□ 2.5
ATG9A-220ENST00000475339 CC2D2AQ9P2K1 1620 aa30.58■■■□□ 2.49
ATG9A-220ENST00000475339 MYO15BQ96JP2 1530 aa30.53■■■□□ 2.48
ATG9A-220ENST00000475339 SHROOM4Q9ULL8 1493 aa30.32■■■□□ 2.44
ATG9A-220ENST00000475339 EIF4G1Q04637 1599 aaKnown RBP30.26■■■□□ 2.43
ATG9A-220ENST00000475339 SCRIBQ14160 1630 aa29.95■■■□□ 2.38
ATG9A-220ENST00000475339 DCAF1Q9Y4B6 1507 aa29.78■■■□□ 2.36
ATG9A-220ENST00000475339 ZCCHC6Q5VYS8 1495 aaKnown RBP29.78■■■□□ 2.36
ATG9A-220ENST00000475339 CUX2O14529 1486 aa29.61■■■□□ 2.33
ATG9A-220ENST00000475339 ERCC6Q03468 1493 aa29.37■■■□□ 2.29
ATG9A-220ENST00000475339 TRIM41Q8WV44 630 aa29.13■■■□□ 2.25
ATG9A-220ENST00000475339 NCAPD3P42695 1498 aa28.99■■■□□ 2.23
ATG9A-220ENST00000475339 NESP48681 1621 aa28.91■■■□□ 2.22
ATG9A-220ENST00000475339 ATAD2BQ9ULI0 1458 aa28.77■■■□□ 2.2
ATG9A-220ENST00000475339 THOC2Q8NI27 1593 aaKnown RBP28.71■■■□□ 2.19
ATG9A-220ENST00000475339 HMGXB3Q12766 1538 aa28.62■■■□□ 2.17
ATG9A-220ENST00000475339 SMARCA2P51531 1590 aa28.57■■■□□ 2.16
ATG9A-220ENST00000475339 SMARCA4P51532 1647 aa28.43■■■□□ 2.14
ATG9A-220ENST00000475339 LAMC3Q9Y6N6 1575 aa28.43■■■□□ 2.14
ATG9A-220ENST00000475339 BAZ1BQ9UIG0 1483 aaKnown RBP28.42■■■□□ 2.14
ATG9A-220ENST00000475339 KIF21AQ7Z4S6 1674 aa28.4■■■□□ 2.14
ATG9A-220ENST00000475339 PDS5BQ9NTI5 1447 aa28.36■■■□□ 2.13
ATG9A-220ENST00000475339 OSCARQ8IYS5 282 aa28.19■■■□□ 2.1
ATG9A-220ENST00000475339 BAZ1AQ9NRL2 1556 aaPredicted RBP28.18■■■□□ 2.1
ATG9A-220ENST00000475339 MRC2Q9UBG0 1479 aa28.17■■■□□ 2.1
ATG9A-220ENST00000475339 PEG3Q9GZU2 1588 aa28.14■■■□□ 2.1
ATG9A-220ENST00000475339 WDR62O43379 1518 aa28.12■■■□□ 2.09
ATG9A-220ENST00000475339 CADPSQ9ULU8 1353 aa28.08■■■□□ 2.09
ATG9A-220ENST00000475339 MROH2BQ7Z745 1585 aa27.92■■■□□ 2.06
ATG9A-220ENST00000475339 RIMBP3CA6NJZ7 1639 aa27.85■■■□□ 2.05
ATG9A-220ENST00000475339 RIMBP3BA6NNM3 1639 aa27.85■■■□□ 2.05
ATG9A-220ENST00000475339 RIMBP3Q9UFD9 1639 aa27.85■■■□□ 2.05
ATG9A-220ENST00000475339 CEP164Q9UPV0 1460 aa27.85■■■□□ 2.05
ATG9A-220ENST00000475339 FANCD2Q9BXW9 1451 aa27.76■■■□□ 2.03
ATG9A-220ENST00000475339 ARHGEF11O15085 1522 aa27.69■■■□□ 2.02
ATG9A-220ENST00000475339 TRHP20396 242 aaPredicted RBP27.66■■■□□ 2.02
ATG9A-220ENST00000475339 CYB5RLQ6IPT4 315 aa27.65■■■□□ 2.02
ATG9A-220ENST00000475339 URB2Q14146 1524 aaKnown RBP27.59■■■□□ 2.01
ATG9A-220ENST00000475339 AEBP2Q6ZN18 517 aaPredicted RBP27.57■■■□□ 2
ATG9A-220ENST00000475339 CFTRP13569 1480 aa27.53■■■□□ 2
ATG9A-220ENST00000475339 WIZO95785 1651 aa27.51■■□□□ 1.99
ATG9A-220ENST00000475339 ZNF608Q9ULD9 1512 aaPredicted RBP27.45■■□□□ 1.98
ATG9A-220ENST00000475339 ARAP1Q96P48 1450 aa27.36■■□□□ 1.97
ATG9A-220ENST00000475339 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
ATG9A-220ENST00000475339 EIF4G3O43432 1585 aaKnown RBP27.16■■□□□ 1.94
ATG9A-220ENST00000475339 RSF1Q96T23 1441 aaPredicted RBP27.16■■□□□ 1.94
ATG9A-220ENST00000475339 FBLN2P98095 1184 aa27.15■■□□□ 1.94
ATG9A-220ENST00000475339 CHD1O14646 1710 aa27.13■■□□□ 1.93
ATG9A-220ENST00000475339 TOPBP1Q92547 1522 aa27.11■■□□□ 1.93
ATG9A-220ENST00000475339 AQRO60306 1485 aaKnown RBP eCLIP27.09■■□□□ 1.93
ATG9A-220ENST00000475339 TOP2AP11388 1531 aaKnown RBP27.06■■□□□ 1.92
ATG9A-220ENST00000475339 PRDM2Q13029 1718 aa27.02■■□□□ 1.92
ATG9A-220ENST00000475339 ABCC8Q09428 1581 aa26.93■■□□□ 1.9
ATG9A-220ENST00000475339 TARBP1Q13395 1621 aaKnown RBP26.91■■□□□ 1.9
ATG9A-220ENST00000475339 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
ATG9A-220ENST00000475339 CCDC88BA6NC98 1476 aa26.83■■□□□ 1.89
ATG9A-220ENST00000475339 CLASP1Q7Z460 1538 aa26.82■■□□□ 1.88
ATG9A-220ENST00000475339 TDRD9Q8NDG6 1382 aaKnown RBP26.78■■□□□ 1.88
ATG9A-220ENST00000475339 POLA1P09884 1462 aaPredicted RBP26.77■■□□□ 1.88
ATG9A-220ENST00000475339 CHMP7Q8WUX9 453 aaPredicted RBP26.75■■□□□ 1.87
ATG9A-220ENST00000475339 RAD54L2Q9Y4B4 1467 aa26.74■■□□□ 1.87
ATG9A-220ENST00000475339 SNAPC4Q5SXM2 1469 aa26.74■■□□□ 1.87
ATG9A-220ENST00000475339 SYNJ1O43426 1573 aa26.7■■□□□ 1.86
ATG9A-220ENST00000475339 GAPVD1Q14C86 1478 aa26.67■■□□□ 1.86
ATG9A-220ENST00000475339 SOGA1O94964 1423 aa26.66■■□□□ 1.86
ATG9A-220ENST00000475339 MAGI1Q96QZ7 1491 aaPredicted RBP26.58■■□□□ 1.85
ATG9A-220ENST00000475339 ILDR1Q86SU0 546 aaPredicted RBP26.55■■□□□ 1.84
ATG9A-220ENST00000475339 SYNJ2O15056 1496 aa26.53■■□□□ 1.84
ATG9A-220ENST00000475339 GRIN2BQ13224 1484 aa26.5■■□□□ 1.83
ATG9A-220ENST00000475339 WDR97A6NE52 1622 aa26.48■■□□□ 1.83
ATG9A-220ENST00000475339 FGD5Q6ZNL6 1462 aa26.46■■□□□ 1.83
ATG9A-220ENST00000475339 ERCC6L2Q5T890 1561 aa26.4■■□□□ 1.82
ATG9A-220ENST00000475339 KDM4FA0A1W2PPD8 638 aa26.3■■□□□ 1.8
ATG9A-220ENST00000475339 KIF13AQ9H1H9 1805 aa26.28■■□□□ 1.8
ATG9A-220ENST00000475339 CUX1P39880 1505 aa26.28■■□□□ 1.8
ATG9A-220ENST00000475339 PBRM1Q86U86 1689 aa26.25■■□□□ 1.79
ATG9A-220ENST00000475339 CEP170Q5SW79 1584 aa26.22■■□□□ 1.79
ATG9A-220ENST00000475339 FAM69CQ0P6D2 419 aa26.17■■□□□ 1.78
ATG9A-220ENST00000475339 GRIN2AQ12879 1464 aa26.17■■□□□ 1.78
ATG9A-220ENST00000475339 NUP160Q12769 1436 aa26.12■■□□□ 1.77
ATG9A-220ENST00000475339 ABCA5Q8WWZ7 1642 aa26.1■■□□□ 1.77
ATG9A-220ENST00000475339 ABCA10Q8WWZ4 1543 aa26.08■■□□□ 1.77
ATG9A-220ENST00000475339 ABCC10Q5T3U5 1492 aa26.07■■□□□ 1.76
ATG9A-220ENST00000475339 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
ATG9A-220ENST00000475339 ADAMTS12P58397 1594 aa25.99■■□□□ 1.75
ATG9A-220ENST00000475339 PRG4Q92954 1404 aaPredicted RBP25.98■■□□□ 1.75
ATG9A-220ENST00000475339 KDM6BO15054 1643 aa25.98■■□□□ 1.75
ATG9A-220ENST00000475339 NPM1P06748 294 aaKnown RBP eCLIP25.97■■□□□ 1.75
ATG9A-220ENST00000475339 DIP2BQ9P265 1576 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms