RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
HLA-DOB-208ENST00000475235 AEBP2Q6ZN18 517 aaPredicted RBP25.18■■□□□ 1.62
HLA-DOB-208ENST00000475235 CCDC180Q9P1Z9 1646 aa25.07■■□□□ 1.6
HLA-DOB-208ENST00000475235 ABCC9O60706 1549 aa24.74■■□□□ 1.55
HLA-DOB-208ENST00000475235 CHIC1Q5VXU3 224 aa24.51■■□□□ 1.51
HLA-DOB-208ENST00000475235 RB1CC1Q8TDY2 1594 aa23.73■■□□□ 1.39
HLA-DOB-208ENST00000475235 NACADO15069 1562 aa23.66■■□□□ 1.38
HLA-DOB-208ENST00000475235 DCAF8L2P0C7V8 631 aa23.59■■□□□ 1.37
HLA-DOB-208ENST00000475235 MYO15BQ96JP2 1530 aa23.49■■□□□ 1.35
HLA-DOB-208ENST00000475235 ZCCHC6Q5VYS8 1495 aaKnown RBP23.39■■□□□ 1.33
HLA-DOB-208ENST00000475235 DCAF1Q9Y4B6 1507 aa23.29■■□□□ 1.32
HLA-DOB-208ENST00000475235 PABPN1Q86U42 306 aaKnown RBP eCLIP23.09■■□□□ 1.29
HLA-DOB-208ENST00000475235 UNC13AQ9UPW8 1703 aa23.03■■□□□ 1.28
HLA-DOB-208ENST00000475235 BICRAQ9NZM4 1560 aa22.96■■□□□ 1.27
HLA-DOB-208ENST00000475235 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
HLA-DOB-208ENST00000475235 SCRIBQ14160 1630 aa22.84■■□□□ 1.25
HLA-DOB-208ENST00000475235 SHROOM4Q9ULL8 1493 aa22.82■■□□□ 1.24
HLA-DOB-208ENST00000475235 EIF4G1Q04637 1599 aaKnown RBP22.41■■□□□ 1.18
HLA-DOB-208ENST00000475235 CC2D2AQ9P2K1 1620 aa22.34■■□□□ 1.17
HLA-DOB-208ENST00000475235 CECR2Q9BXF3 1484 aa22.27■■□□□ 1.16
HLA-DOB-208ENST00000475235 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
HLA-DOB-208ENST00000475235 SMARCA4P51532 1647 aa21.84■■□□□ 1.09
HLA-DOB-208ENST00000475235 BAZ1AQ9NRL2 1556 aaPredicted RBP21.83■■□□□ 1.09
HLA-DOB-208ENST00000475235 ATAD2BQ9ULI0 1458 aa21.81■■□□□ 1.08
HLA-DOB-208ENST00000475235 SMARCA2P51531 1590 aa21.78■■□□□ 1.08
HLA-DOB-208ENST00000475235 HMGXB3Q12766 1538 aa21.7■■□□□ 1.07
HLA-DOB-208ENST00000475235 PEG3Q9GZU2 1588 aa21.66■■□□□ 1.06
HLA-DOB-208ENST00000475235 MROH2BQ7Z745 1585 aa21.64■■□□□ 1.06
HLA-DOB-208ENST00000475235 BAZ1BQ9UIG0 1483 aaKnown RBP21.63■■□□□ 1.05
HLA-DOB-208ENST00000475235 PHF23Q9BUL5 403 aaPredicted RBP21.52■■□□□ 1.04
HLA-DOB-208ENST00000475235 SENP3Q9H4L4 574 aaPredicted RBP21.4■■□□□ 1.02
HLA-DOB-208ENST00000475235 ERCC6Q03468 1493 aa21.38■■□□□ 1.01
HLA-DOB-208ENST00000475235 WIZO95785 1651 aa21.36■■□□□ 1.01
HLA-DOB-208ENST00000475235 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
HLA-DOB-208ENST00000475235 NESP48681 1621 aa21.32■■□□□ 1
HLA-DOB-208ENST00000475235 LAMC3Q9Y6N6 1575 aa21.29■■□□□ 1
HLA-DOB-208ENST00000475235 CUX2O14529 1486 aa21.23■□□□□ 0.99
HLA-DOB-208ENST00000475235 CADPSQ9ULU8 1353 aa21.21■□□□□ 0.99
HLA-DOB-208ENST00000475235 PDS5BQ9NTI5 1447 aa21.19■□□□□ 0.98
HLA-DOB-208ENST00000475235 TOP2AP11388 1531 aaKnown RBP21.19■□□□□ 0.98
HLA-DOB-208ENST00000475235 THOC2Q8NI27 1593 aaKnown RBP21.04■□□□□ 0.96
HLA-DOB-208ENST00000475235 CFTRP13569 1480 aa21.02■□□□□ 0.96
HLA-DOB-208ENST00000475235 KIF21AQ7Z4S6 1674 aa21.01■□□□□ 0.95
HLA-DOB-208ENST00000475235 MRC2Q9UBG0 1479 aa20.96■□□□□ 0.95
HLA-DOB-208ENST00000475235 FANCD2Q9BXW9 1451 aa20.94■□□□□ 0.94
HLA-DOB-208ENST00000475235 CEP164Q9UPV0 1460 aa20.94■□□□□ 0.94
HLA-DOB-208ENST00000475235 CCDC88BA6NC98 1476 aa20.93■□□□□ 0.94
HLA-DOB-208ENST00000475235 WDR62O43379 1518 aa20.88■□□□□ 0.93
HLA-DOB-208ENST00000475235 DNAJC5Q9H3Z4 198 aa20.81■□□□□ 0.92
HLA-DOB-208ENST00000475235 PRDM2Q13029 1718 aa20.72■□□□□ 0.91
HLA-DOB-208ENST00000475235 URB2Q14146 1524 aaKnown RBP20.71■□□□□ 0.91
HLA-DOB-208ENST00000475235 SUPT5HO00267 1087 aaKnown RBP20.65■□□□□ 0.9
HLA-DOB-208ENST00000475235 ABCC8Q09428 1581 aa20.61■□□□□ 0.89
HLA-DOB-208ENST00000475235 TOPBP1Q92547 1522 aa20.56■□□□□ 0.88
HLA-DOB-208ENST00000475235 DNMBPQ6XZF7 1577 aa20.53■□□□□ 0.88
HLA-DOB-208ENST00000475235 IFT140Q96RY7 1462 aa20.52■□□□□ 0.88
HLA-DOB-208ENST00000475235 ZNF608Q9ULD9 1512 aaPredicted RBP20.4■□□□□ 0.86
HLA-DOB-208ENST00000475235 POLA1P09884 1462 aaPredicted RBP20.39■□□□□ 0.85
HLA-DOB-208ENST00000475235 OSCARQ8IYS5 282 aa20.33■□□□□ 0.85
HLA-DOB-208ENST00000475235 TARBP1Q13395 1621 aaKnown RBP20.33■□□□□ 0.84
HLA-DOB-208ENST00000475235 CUX1P39880 1505 aa20.32■□□□□ 0.84
HLA-DOB-208ENST00000475235 SOGA1O94964 1423 aa20.32■□□□□ 0.84
HLA-DOB-208ENST00000475235 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
HLA-DOB-208ENST00000475235 EIF4G3O43432 1585 aaKnown RBP20.3■□□□□ 0.84
HLA-DOB-208ENST00000475235 RAD54L2Q9Y4B4 1467 aa20.28■□□□□ 0.84
HLA-DOB-208ENST00000475235 AQRO60306 1485 aaKnown RBP eCLIP20.27■□□□□ 0.84
HLA-DOB-208ENST00000475235 WDR97A6NE52 1622 aa20.22■□□□□ 0.83
HLA-DOB-208ENST00000475235 TDRD9Q8NDG6 1382 aaKnown RBP20.21■□□□□ 0.83
HLA-DOB-208ENST00000475235 WRNQ14191 1432 aaPredicted RBP eCLIP20.16■□□□□ 0.82
HLA-DOB-208ENST00000475235 GRIN2BQ13224 1484 aa20.11■□□□□ 0.81
HLA-DOB-208ENST00000475235 ABCA10Q8WWZ4 1543 aa20.11■□□□□ 0.81
HLA-DOB-208ENST00000475235 TOP2BQ02880 1626 aa20.1■□□□□ 0.81
HLA-DOB-208ENST00000475235 FBLN2P98095 1184 aa20.1■□□□□ 0.81
HLA-DOB-208ENST00000475235 SNAPC4Q5SXM2 1469 aa20.09■□□□□ 0.81
HLA-DOB-208ENST00000475235 MAGI1Q96QZ7 1491 aaPredicted RBP20.08■□□□□ 0.81
HLA-DOB-208ENST00000475235 GAPVD1Q14C86 1478 aa20.08■□□□□ 0.8
HLA-DOB-208ENST00000475235 BIVM-ERCC5R4GMW8 1640 aa20.07■□□□□ 0.8
HLA-DOB-208ENST00000475235 SYNJ1O43426 1573 aa20.06■□□□□ 0.8
HLA-DOB-208ENST00000475235 CHMP7Q8WUX9 453 aaPredicted RBP20.03■□□□□ 0.8
HLA-DOB-208ENST00000475235 TRIM41Q8WV44 630 aa20.02■□□□□ 0.8
HLA-DOB-208ENST00000475235 CHD1O14646 1710 aa20.02■□□□□ 0.8
HLA-DOB-208ENST00000475235 ABCA5Q8WWZ7 1642 aa20.01■□□□□ 0.79
HLA-DOB-208ENST00000475235 SYNJ2O15056 1496 aa20■□□□□ 0.79
HLA-DOB-208ENST00000475235 PBRM1Q86U86 1689 aa19.96■□□□□ 0.79
HLA-DOB-208ENST00000475235 ARHGEF11O15085 1522 aa19.96■□□□□ 0.79
HLA-DOB-208ENST00000475235 RIMBP3CA6NJZ7 1639 aa19.94■□□□□ 0.78
HLA-DOB-208ENST00000475235 RIMBP3BA6NNM3 1639 aa19.94■□□□□ 0.78
HLA-DOB-208ENST00000475235 RIMBP3Q9UFD9 1639 aa19.94■□□□□ 0.78
HLA-DOB-208ENST00000475235 CLASP1Q7Z460 1538 aa19.88■□□□□ 0.77
HLA-DOB-208ENST00000475235 ERICH3Q5RHP9 1530 aa19.87■□□□□ 0.77
HLA-DOB-208ENST00000475235 FOXD1Q16676 465 aa19.86■□□□□ 0.77
HLA-DOB-208ENST00000475235 FHAD1B1AJZ9 1412 aa19.85■□□□□ 0.77
HLA-DOB-208ENST00000475235 ADAMTS12P58397 1594 aa19.84■□□□□ 0.77
HLA-DOB-208ENST00000475235 PLPPR3Q6T4P5 718 aa19.84■□□□□ 0.77
HLA-DOB-208ENST00000475235 GRIN2AQ12879 1464 aa19.84■□□□□ 0.77
HLA-DOB-208ENST00000475235 CYB5RLQ6IPT4 315 aa19.8■□□□□ 0.76
HLA-DOB-208ENST00000475235 KIF27Q86VH2 1401 aa19.78■□□□□ 0.76
HLA-DOB-208ENST00000475235 ARAP1Q96P48 1450 aa19.77■□□□□ 0.76
HLA-DOB-208ENST00000475235 NUP160Q12769 1436 aa19.77■□□□□ 0.76
HLA-DOB-208ENST00000475235 CEP170Q5SW79 1584 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms