RNA–Protein interactions for RNA: ENST00000475189.1

SRM-204, Transcript of spermidine synthase, humanhuman

TSL 2

Gene SRM, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-204ENST00000475189 NISCHQ9Y2I1 1504 aa39.41■■■■□ 3.9
SRM-204ENST00000475189 CCDC180Q9P1Z9 1646 aa35.03■■■■□ 3.2
SRM-204ENST00000475189 ABCC9O60706 1549 aa34.22■■■■□ 3.07
SRM-204ENST00000475189 RB1CC1Q8TDY2 1594 aa32.93■■■□□ 2.86
SRM-204ENST00000475189 NACADO15069 1562 aa32.91■■■□□ 2.86
SRM-204ENST00000475189 DCAF8L2P0C7V8 631 aa32.89■■■□□ 2.86
SRM-204ENST00000475189 ZCCHC6Q5VYS8 1495 aaKnown RBP32.83■■■□□ 2.85
SRM-204ENST00000475189 MYO15BQ96JP2 1530 aa32.72■■■□□ 2.83
SRM-204ENST00000475189 DCAF1Q9Y4B6 1507 aa32.61■■■□□ 2.81
SRM-204ENST00000475189 UNC13AQ9UPW8 1703 aa32.27■■■□□ 2.76
SRM-204ENST00000475189 PABPN1Q86U42 306 aaKnown RBP eCLIP31.99■■■□□ 2.71
SRM-204ENST00000475189 BICRAQ9NZM4 1560 aa31.97■■■□□ 2.71
SRM-204ENST00000475189 SCRIBQ14160 1630 aa31.96■■■□□ 2.71
SRM-204ENST00000475189 DNAJC5BQ9UF47 199 aa31.63■■■□□ 2.65
SRM-204ENST00000475189 SHROOM4Q9ULL8 1493 aa31.58■■■□□ 2.65
SRM-204ENST00000475189 EIF4G1Q04637 1599 aaKnown RBP31.09■■■□□ 2.57
SRM-204ENST00000475189 CC2D2AQ9P2K1 1620 aa30.97■■■□□ 2.55
SRM-204ENST00000475189 CECR2Q9BXF3 1484 aa30.74■■■□□ 2.51
SRM-204ENST00000475189 SMARCA4P51532 1647 aa30.58■■■□□ 2.49
SRM-204ENST00000475189 BAZ1AQ9NRL2 1556 aaPredicted RBP30.53■■■□□ 2.48
SRM-204ENST00000475189 ATAD2BQ9ULI0 1458 aa30.39■■■□□ 2.46
SRM-204ENST00000475189 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
SRM-204ENST00000475189 NCAPD3P42695 1498 aa30.37■■■□□ 2.45
SRM-204ENST00000475189 SMARCA2P51531 1590 aa30.34■■■□□ 2.45
SRM-204ENST00000475189 PEG3Q9GZU2 1588 aa30.28■■■□□ 2.44
SRM-204ENST00000475189 HMGXB3Q12766 1538 aa30.22■■■□□ 2.43
SRM-204ENST00000475189 BAZ1BQ9UIG0 1483 aaKnown RBP30.12■■■□□ 2.41
SRM-204ENST00000475189 WIZO95785 1651 aa30.08■■■□□ 2.41
SRM-204ENST00000475189 RSF1Q96T23 1441 aaPredicted RBP30.04■■■□□ 2.4
SRM-204ENST00000475189 TOP2AP11388 1531 aaKnown RBP29.73■■■□□ 2.35
SRM-204ENST00000475189 NESP48681 1621 aa29.64■■■□□ 2.34
SRM-204ENST00000475189 LAMC3Q9Y6N6 1575 aa29.56■■■□□ 2.32
SRM-204ENST00000475189 CADPSQ9ULU8 1353 aa29.48■■■□□ 2.31
SRM-204ENST00000475189 ERCC6Q03468 1493 aa29.47■■■□□ 2.31
SRM-204ENST00000475189 CCDC88BA6NC98 1476 aa29.39■■■□□ 2.3
SRM-204ENST00000475189 PDS5BQ9NTI5 1447 aa29.34■■■□□ 2.29
SRM-204ENST00000475189 KIF21AQ7Z4S6 1674 aa29.32■■■□□ 2.28
SRM-204ENST00000475189 CFTRP13569 1480 aa29.31■■■□□ 2.28
SRM-204ENST00000475189 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
SRM-204ENST00000475189 THOC2Q8NI27 1593 aaKnown RBP29.18■■■□□ 2.26
SRM-204ENST00000475189 PRDM2Q13029 1718 aa29.15■■■□□ 2.26
SRM-204ENST00000475189 CUX2O14529 1486 aa29.15■■■□□ 2.26
SRM-204ENST00000475189 FANCD2Q9BXW9 1451 aa29.14■■■□□ 2.26
SRM-204ENST00000475189 CEP164Q9UPV0 1460 aa29.09■■■□□ 2.25
SRM-204ENST00000475189 MRC2Q9UBG0 1479 aa29.04■■■□□ 2.24
SRM-204ENST00000475189 DNAJC5Q9H3Z4 198 aa29.03■■■□□ 2.24
SRM-204ENST00000475189 WDR62O43379 1518 aa28.95■■■□□ 2.23
SRM-204ENST00000475189 URB2Q14146 1524 aaKnown RBP28.87■■■□□ 2.21
SRM-204ENST00000475189 TOPBP1Q92547 1522 aa28.69■■■□□ 2.18
SRM-204ENST00000475189 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
SRM-204ENST00000475189 DNMBPQ6XZF7 1577 aa28.66■■■□□ 2.18
SRM-204ENST00000475189 CUX1P39880 1505 aa28.49■■■□□ 2.15
SRM-204ENST00000475189 IFT140Q96RY7 1462 aa28.48■■■□□ 2.15
SRM-204ENST00000475189 POLA1P09884 1462 aaPredicted RBP28.45■■■□□ 2.14
SRM-204ENST00000475189 TARBP1Q13395 1621 aaKnown RBP28.39■■■□□ 2.13
SRM-204ENST00000475189 FGD5Q6ZNL6 1462 aa28.38■■■□□ 2.13
SRM-204ENST00000475189 ZNF608Q9ULD9 1512 aaPredicted RBP28.37■■■□□ 2.13
SRM-204ENST00000475189 RAD54L2Q9Y4B4 1467 aa28.34■■■□□ 2.13
SRM-204ENST00000475189 SOGA1O94964 1423 aa28.33■■■□□ 2.13
SRM-204ENST00000475189 WRNQ14191 1432 aaPredicted RBP eCLIP28.31■■■□□ 2.12
SRM-204ENST00000475189 BIVM-ERCC5R4GMW8 1640 aa28.27■■■□□ 2.12
SRM-204ENST00000475189 TOP2BQ02880 1626 aa28.26■■■□□ 2.11
SRM-204ENST00000475189 SYNJ1O43426 1573 aa28.26■■■□□ 2.11
SRM-204ENST00000475189 EIF4G3O43432 1585 aaKnown RBP28.26■■■□□ 2.11
SRM-204ENST00000475189 AQRO60306 1485 aaKnown RBP eCLIP28.21■■■□□ 2.113e-10■■■■□ 22.4
SRM-204ENST00000475189 WDR97A6NE52 1622 aa28.18■■■□□ 2.1
SRM-204ENST00000475189 TDRD9Q8NDG6 1382 aaKnown RBP28.17■■■□□ 2.1
SRM-204ENST00000475189 ABCA10Q8WWZ4 1543 aa28.11■■■□□ 2.09
SRM-204ENST00000475189 ABCA5Q8WWZ7 1642 aa28■■■□□ 2.07
SRM-204ENST00000475189 GAPVD1Q14C86 1478 aa28■■■□□ 2.07
SRM-204ENST00000475189 GRIN2BQ13224 1484 aa27.98■■■□□ 2.07
SRM-204ENST00000475189 PBRM1Q86U86 1689 aa27.97■■■□□ 2.07
SRM-204ENST00000475189 OSCARQ8IYS5 282 aa27.96■■■□□ 2.07
SRM-204ENST00000475189 SNAPC4Q5SXM2 1469 aa27.95■■■□□ 2.06
SRM-204ENST00000475189 CHD1O14646 1710 aa27.93■■■□□ 2.06
SRM-204ENST00000475189 MAGI1Q96QZ7 1491 aaPredicted RBP27.9■■■□□ 2.06
SRM-204ENST00000475189 FBLN2P98095 1184 aa27.85■■■□□ 2.05
SRM-204ENST00000475189 SYNJ2O15056 1496 aa27.79■■■□□ 2.04
SRM-204ENST00000475189 CHMP7Q8WUX9 453 aaPredicted RBP27.78■■■□□ 2.04
SRM-204ENST00000475189 ERICH3Q5RHP9 1530 aa27.77■■■□□ 2.04
SRM-204ENST00000475189 ADAMTS12P58397 1594 aa27.73■■■□□ 2.03
SRM-204ENST00000475189 KIF27Q86VH2 1401 aa27.7■■■□□ 2.03
SRM-204ENST00000475189 TRIM41Q8WV44 630 aa27.69■■■□□ 2.02
SRM-204ENST00000475189 FHAD1B1AJZ9 1412 aa27.67■■■□□ 2.02
SRM-204ENST00000475189 GRIN2AQ12879 1464 aa27.63■■■□□ 2.01
SRM-204ENST00000475189 IGF1RP08069 1367 aa27.61■■■□□ 2.01
SRM-204ENST00000475189 CLASP1Q7Z460 1538 aa27.6■■■□□ 2.01
SRM-204ENST00000475189 CUL7Q14999 1698 aa27.53■■■□□ 2
SRM-204ENST00000475189 RIMBP3CA6NJZ7 1639 aa27.53■■■□□ 2
SRM-204ENST00000475189 RIMBP3BA6NNM3 1639 aa27.53■■■□□ 2
SRM-204ENST00000475189 RIMBP3Q9UFD9 1639 aa27.53■■■□□ 2
SRM-204ENST00000475189 ARHGEF11O15085 1522 aa27.51■■■□□ 2
SRM-204ENST00000475189 RUSC2Q8N2Y8 1516 aa27.51■■■□□ 2
SRM-204ENST00000475189 CEP170Q5SW79 1584 aa27.51■■□□□ 1.99
SRM-204ENST00000475189 NUP160Q12769 1436 aa27.5■■□□□ 1.99
SRM-204ENST00000475189 CARMIL1Q5VZK9 1371 aa27.44■■□□□ 1.98
SRM-204ENST00000475189 CHIC1Q5VXU3 224 aa27.39■■□□□ 1.98
SRM-204ENST00000475189 SHROOM2Q13796 1616 aa27.32■■□□□ 1.96
SRM-204ENST00000475189 ARAP1Q96P48 1450 aa27.31■■□□□ 1.96
SRM-204ENST00000475189 RAPGEF2Q9Y4G8 1499 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms