RNA–Protein interactions for RNA: ENST00000475043.5

PDPN-204, Transcript of podoplanin, humanhuman

TSL 3 BASIC

Gene PDPN, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-204ENST00000475043 AEBP2Q6ZN18 517 aaPredicted RBP25.19■■□□□ 1.62
PDPN-204ENST00000475043 CHIC1Q5VXU3 224 aa24.04■■□□□ 1.44
PDPN-204ENST00000475043 NISCHQ9Y2I1 1504 aa23.17■■□□□ 1.3
PDPN-204ENST00000475043 SENP3Q9H4L4 574 aaPredicted RBP21.47■■□□□ 1.03
PDPN-204ENST00000475043 PHF23Q9BUL5 403 aaPredicted RBP21.21■□□□□ 0.99
PDPN-204ENST00000475043 CCDC180Q9P1Z9 1646 aa20.71■□□□□ 0.91
PDPN-204ENST00000475043 ABCC9O60706 1549 aa20.49■□□□□ 0.87
PDPN-204ENST00000475043 FOXD1Q16676 465 aa19.99■□□□□ 0.79
PDPN-204ENST00000475043 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
PDPN-204ENST00000475043 DCAF8L2P0C7V8 631 aa19.53■□□□□ 0.72
PDPN-204ENST00000475043 NACADO15069 1562 aa19.5■□□□□ 0.71
PDPN-204ENST00000475043 MYO15BQ96JP2 1530 aa19.27■□□□□ 0.68
PDPN-204ENST00000475043 PLPPR3Q6T4P5 718 aa19.26■□□□□ 0.67
PDPN-204ENST00000475043 ZCCHC6Q5VYS8 1495 aaKnown RBP19.24■□□□□ 0.67
PDPN-204ENST00000475043 UNC13AQ9UPW8 1703 aa19.2■□□□□ 0.66
PDPN-204ENST00000475043 DCAF1Q9Y4B6 1507 aa19.12■□□□□ 0.65
PDPN-204ENST00000475043 PABPN1Q86U42 306 aaKnown RBP eCLIP19.11■□□□□ 0.65
PDPN-204ENST00000475043 BICRAQ9NZM4 1560 aa19■□□□□ 0.63
PDPN-204ENST00000475043 DNAJC5BQ9UF47 199 aa18.96■□□□□ 0.63
PDPN-204ENST00000475043 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
PDPN-204ENST00000475043 PPP6R1Q9UPN7 881 aa18.78■□□□□ 0.6
PDPN-204ENST00000475043 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
PDPN-204ENST00000475043 ADRA2BP18089 450 aa18.72■□□□□ 0.59
PDPN-204ENST00000475043 PIAS4Q8N2W9 510 aaPredicted RBP18.7■□□□□ 0.58
PDPN-204ENST00000475043 MSH5O43196 834 aa18.67■□□□□ 0.58
PDPN-204ENST00000475043 EIF4G1Q04637 1599 aaKnown RBP18.53■□□□□ 0.56
PDPN-204ENST00000475043 CC2D2AQ9P2K1 1620 aa18.52■□□□□ 0.56
PDPN-204ENST00000475043 CECR2Q9BXF3 1484 aa18.41■□□□□ 0.54
PDPN-204ENST00000475043 SMARCA4P51532 1647 aa18.05■□□□□ 0.48
PDPN-204ENST00000475043 POTEDQ86YR6 584 aa18.02■□□□□ 0.48
PDPN-204ENST00000475043 BAZ1AQ9NRL2 1556 aaPredicted RBP17.98■□□□□ 0.47
PDPN-204ENST00000475043 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
PDPN-204ENST00000475043 ATAD2BQ9ULI0 1458 aa17.97■□□□□ 0.47
PDPN-204ENST00000475043 SMARCA2P51531 1590 aa17.96■□□□□ 0.46
PDPN-204ENST00000475043 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
PDPN-204ENST00000475043 MROH2BQ7Z745 1585 aa17.87■□□□□ 0.45
PDPN-204ENST00000475043 BAZ1BQ9UIG0 1483 aaKnown RBP17.84■□□□□ 0.45
PDPN-204ENST00000475043 PEG3Q9GZU2 1588 aa17.83■□□□□ 0.44
PDPN-204ENST00000475043 WIZO95785 1651 aa17.7■□□□□ 0.42
PDPN-204ENST00000475043 ERCC6Q03468 1493 aa17.69■□□□□ 0.42
PDPN-204ENST00000475043 NESP48681 1621 aa17.66■□□□□ 0.42
PDPN-204ENST00000475043 LAMC3Q9Y6N6 1575 aa17.57■□□□□ 0.4
PDPN-204ENST00000475043 RSF1Q96T23 1441 aaPredicted RBP17.56■□□□□ 0.4
PDPN-204ENST00000475043 CUX2O14529 1486 aa17.53■□□□□ 0.4
PDPN-204ENST00000475043 KIF21AQ7Z4S6 1674 aa17.48■□□□□ 0.39
PDPN-204ENST00000475043 TOP2AP11388 1531 aaKnown RBP17.46■□□□□ 0.39
PDPN-204ENST00000475043 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
PDPN-204ENST00000475043 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
PDPN-204ENST00000475043 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
PDPN-204ENST00000475043 CFTRP13569 1480 aa17.3■□□□□ 0.36
PDPN-204ENST00000475043 MRC2Q9UBG0 1479 aa17.29■□□□□ 0.36
PDPN-204ENST00000475043 CEP164Q9UPV0 1460 aa17.29■□□□□ 0.36
PDPN-204ENST00000475043 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
PDPN-204ENST00000475043 CCDC88BA6NC98 1476 aa17.25■□□□□ 0.35
PDPN-204ENST00000475043 DNAJC5Q9H3Z4 198 aa17.24■□□□□ 0.35
PDPN-204ENST00000475043 WDR62O43379 1518 aa17.23■□□□□ 0.35
PDPN-204ENST00000475043 PRDM2Q13029 1718 aa17.23■□□□□ 0.35
PDPN-204ENST00000475043 MAPK8IP2Q13387 824 aaPredicted RBP17.16■□□□□ 0.34
PDPN-204ENST00000475043 SCAF1Q9H7N4 1312 aaKnown RBP17.14■□□□□ 0.33
PDPN-204ENST00000475043 URB2Q14146 1524 aaKnown RBP17.11■□□□□ 0.33
PDPN-204ENST00000475043 DMRT2Q9Y5R5 561 aa17.05■□□□□ 0.32
PDPN-204ENST00000475043 SUPT5HO00267 1087 aaKnown RBP17.03■□□□□ 0.32
PDPN-204ENST00000475043 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
PDPN-204ENST00000475043 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
PDPN-204ENST00000475043 DNMBPQ6XZF7 1577 aa16.94■□□□□ 0.3
PDPN-204ENST00000475043 IFT140Q96RY7 1462 aa16.91■□□□□ 0.3
PDPN-204ENST00000475043 PPP4R3CPQ6ZMV5 832 aa16.89■□□□□ 0.29
PDPN-204ENST00000475043 ZNF608Q9ULD9 1512 aaPredicted RBP16.87■□□□□ 0.29
PDPN-204ENST00000475043 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
PDPN-204ENST00000475043 EIF4G3O43432 1585 aaKnown RBP16.81■□□□□ 0.28
PDPN-204ENST00000475043 POLA1P09884 1462 aaPredicted RBP16.81■□□□□ 0.28
PDPN-204ENST00000475043 OSCARQ8IYS5 282 aa16.78■□□□□ 0.28
PDPN-204ENST00000475043 CUX1P39880 1505 aa16.77■□□□□ 0.28
PDPN-204ENST00000475043 RAD54L2Q9Y4B4 1467 aa16.76■□□□□ 0.27
PDPN-204ENST00000475043 FGD5Q6ZNL6 1462 aa16.75■□□□□ 0.27
PDPN-204ENST00000475043 SOGA1O94964 1423 aa16.75■□□□□ 0.27
PDPN-204ENST00000475043 AQRO60306 1485 aaKnown RBP eCLIP16.74■□□□□ 0.27
PDPN-204ENST00000475043 TDRD9Q8NDG6 1382 aaKnown RBP16.69■□□□□ 0.26
PDPN-204ENST00000475043 CHD1O14646 1710 aa16.67■□□□□ 0.26
PDPN-204ENST00000475043 TRIM41Q8WV44 630 aa16.65■□□□□ 0.26
PDPN-204ENST00000475043 WDR97A6NE52 1622 aa16.65■□□□□ 0.26
PDPN-204ENST00000475043 FBLN2P98095 1184 aa16.64■□□□□ 0.25
PDPN-204ENST00000475043 SNAPC4Q5SXM2 1469 aa16.6■□□□□ 0.25
PDPN-204ENST00000475043 WRNQ14191 1432 aaPredicted RBP eCLIP16.59■□□□□ 0.25
PDPN-204ENST00000475043 BIVM-ERCC5R4GMW8 1640 aa16.59■□□□□ 0.25
PDPN-204ENST00000475043 PBRM1Q86U86 1689 aa16.59■□□□□ 0.25
PDPN-204ENST00000475043 TOP2BQ02880 1626 aa16.58■□□□□ 0.24
PDPN-204ENST00000475043 SYNJ1O43426 1573 aa16.57■□□□□ 0.24
PDPN-204ENST00000475043 GRIN2BQ13224 1484 aa16.57■□□□□ 0.24
PDPN-204ENST00000475043 RIMBP3CA6NJZ7 1639 aa16.56■□□□□ 0.24
PDPN-204ENST00000475043 RIMBP3BA6NNM3 1639 aa16.56■□□□□ 0.24
PDPN-204ENST00000475043 RIMBP3Q9UFD9 1639 aa16.56■□□□□ 0.24
PDPN-204ENST00000475043 ABCA10Q8WWZ4 1543 aa16.55■□□□□ 0.24
PDPN-204ENST00000475043 GAPVD1Q14C86 1478 aa16.55■□□□□ 0.24
PDPN-204ENST00000475043 CNKSR2Q8WXI2 1034 aa16.55■□□□□ 0.24
PDPN-204ENST00000475043 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
PDPN-204ENST00000475043 ABCA5Q8WWZ7 1642 aa16.53■□□□□ 0.24
PDPN-204ENST00000475043 CHMP7Q8WUX9 453 aaPredicted RBP16.53■□□□□ 0.24
PDPN-204ENST00000475043 ARHGEF11O15085 1522 aa16.52■□□□□ 0.24
PDPN-204ENST00000475043 SYNJ2O15056 1496 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms