RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 NISCHQ9Y2I1 1504 aa21.21■□□□□ 0.99
USP54-211ENST00000474929 ABCC9O60706 1549 aa20.13■□□□□ 0.81
USP54-211ENST00000474929 CCDC180Q9P1Z9 1646 aa19.55■□□□□ 0.72
USP54-211ENST00000474929 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
USP54-211ENST00000474929 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
USP54-211ENST00000474929 DNAJC5Q9H3Z4 198 aa18.66■□□□□ 0.58
USP54-211ENST00000474929 NACADO15069 1562 aa18.64■□□□□ 0.58
USP54-211ENST00000474929 PABPN1Q86U42 306 aaKnown RBP eCLIP18.49■□□□□ 0.55
USP54-211ENST00000474929 UNC13AQ9UPW8 1703 aa18.4■□□□□ 0.54
USP54-211ENST00000474929 BICRAQ9NZM4 1560 aa18.31■□□□□ 0.52
USP54-211ENST00000474929 CECR2Q9BXF3 1484 aa18.31■□□□□ 0.52
USP54-211ENST00000474929 SHROOM4Q9ULL8 1493 aa18.29■□□□□ 0.52
USP54-211ENST00000474929 CC2D2AQ9P2K1 1620 aa18.21■□□□□ 0.51
USP54-211ENST00000474929 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
USP54-211ENST00000474929 DCAF8L2P0C7V8 631 aa18.07■□□□□ 0.48
USP54-211ENST00000474929 EIF4G1Q04637 1599 aaKnown RBP18■□□□□ 0.47
USP54-211ENST00000474929 CUX2O14529 1486 aa17.9■□□□□ 0.46
USP54-211ENST00000474929 DCAF1Q9Y4B6 1507 aa17.6■□□□□ 0.41
USP54-211ENST00000474929 SCRIBQ14160 1630 aa17.58■□□□□ 0.41
USP54-211ENST00000474929 ERCC6Q03468 1493 aa17.57■□□□□ 0.4
USP54-211ENST00000474929 ZCCHC6Q5VYS8 1495 aaKnown RBP17.44■□□□□ 0.38
USP54-211ENST00000474929 TRIM41Q8WV44 630 aa17.42■□□□□ 0.38
USP54-211ENST00000474929 NCAPD3P42695 1498 aa17.16■□□□□ 0.34
USP54-211ENST00000474929 THOC2Q8NI27 1593 aaKnown RBP17.15■□□□□ 0.34
USP54-211ENST00000474929 HMGXB3Q12766 1538 aa17.04■□□□□ 0.32
USP54-211ENST00000474929 NESP48681 1621 aa17.01■□□□□ 0.31
USP54-211ENST00000474929 LAMC3Q9Y6N6 1575 aa16.98■□□□□ 0.31
USP54-211ENST00000474929 SMARCA2P51531 1590 aa16.97■□□□□ 0.31
USP54-211ENST00000474929 ATAD2BQ9ULI0 1458 aa16.94■□□□□ 0.3
USP54-211ENST00000474929 BAZ1AQ9NRL2 1556 aaPredicted RBP16.9■□□□□ 0.3
USP54-211ENST00000474929 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
USP54-211ENST00000474929 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
USP54-211ENST00000474929 OSCARQ8IYS5 282 aa16.8■□□□□ 0.28
USP54-211ENST00000474929 BAZ1BQ9UIG0 1483 aaKnown RBP16.79■□□□□ 0.28
USP54-211ENST00000474929 MRC2Q9UBG0 1479 aa16.77■□□□□ 0.28
USP54-211ENST00000474929 WDR62O43379 1518 aa16.76■□□□□ 0.27
USP54-211ENST00000474929 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
USP54-211ENST00000474929 AEBP2Q6ZN18 517 aaPredicted RBP16.74■□□□□ 0.27
USP54-211ENST00000474929 RIMBP3CA6NJZ7 1639 aa16.7■□□□□ 0.26
USP54-211ENST00000474929 RIMBP3BA6NNM3 1639 aa16.7■□□□□ 0.26
USP54-211ENST00000474929 RIMBP3Q9UFD9 1639 aa16.7■□□□□ 0.26
USP54-211ENST00000474929 PEG3Q9GZU2 1588 aa16.65■□□□□ 0.26
USP54-211ENST00000474929 ARHGEF11O15085 1522 aa16.58■□□□□ 0.24
USP54-211ENST00000474929 CADPSQ9ULU8 1353 aa16.57■□□□□ 0.24
USP54-211ENST00000474929 CEP164Q9UPV0 1460 aa16.54■□□□□ 0.24
USP54-211ENST00000474929 TRHP20396 242 aaPredicted RBP16.51■□□□□ 0.23
USP54-211ENST00000474929 FANCD2Q9BXW9 1451 aa16.39■□□□□ 0.21
USP54-211ENST00000474929 CYB5RLQ6IPT4 315 aa16.38■□□□□ 0.21
USP54-211ENST00000474929 ARAP1Q96P48 1450 aa16.32■□□□□ 0.2
USP54-211ENST00000474929 RSF1Q96T23 1441 aaPredicted RBP16.3■□□□□ 0.2
USP54-211ENST00000474929 MROH2BQ7Z745 1585 aa16.26■□□□□ 0.19
USP54-211ENST00000474929 URB2Q14146 1524 aaKnown RBP16.25■□□□□ 0.19
USP54-211ENST00000474929 IFT140Q96RY7 1462 aa16.25■□□□□ 0.19
USP54-211ENST00000474929 CFTRP13569 1480 aa16.22■□□□□ 0.19
USP54-211ENST00000474929 ZNF608Q9ULD9 1512 aaPredicted RBP16.14■□□□□ 0.18
USP54-211ENST00000474929 CHD1O14646 1710 aa16.14■□□□□ 0.17
USP54-211ENST00000474929 EIF4G3O43432 1585 aaKnown RBP16.14■□□□□ 0.17
USP54-211ENST00000474929 PRDM2Q13029 1718 aa16.08■□□□□ 0.17
USP54-211ENST00000474929 ILDR1Q86SU0 546 aaPredicted RBP16.04■□□□□ 0.16
USP54-211ENST00000474929 ABCC8Q09428 1581 aa16.03■□□□□ 0.16
USP54-211ENST00000474929 WIZO95785 1651 aa16.01■□□□□ 0.15
USP54-211ENST00000474929 TOPBP1Q92547 1522 aa15.98■□□□□ 0.15
USP54-211ENST00000474929 CLASP1Q7Z460 1538 aa15.97■□□□□ 0.15
USP54-211ENST00000474929 SYNJ1O43426 1573 aa15.96■□□□□ 0.15
USP54-211ENST00000474929 FBLN2P98095 1184 aa15.95■□□□□ 0.14
USP54-211ENST00000474929 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
USP54-211ENST00000474929 WDR97A6NE52 1622 aa15.89■□□□□ 0.13
USP54-211ENST00000474929 TARBP1Q13395 1621 aaKnown RBP15.89■□□□□ 0.13
USP54-211ENST00000474929 AQRO60306 1485 aaKnown RBP eCLIP15.89■□□□□ 0.13
USP54-211ENST00000474929 TOP2AP11388 1531 aaKnown RBP15.89■□□□□ 0.13
USP54-211ENST00000474929 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
USP54-211ENST00000474929 MAGI1Q96QZ7 1491 aaPredicted RBP15.82■□□□□ 0.12
USP54-211ENST00000474929 SNAPC4Q5SXM2 1469 aa15.79■□□□□ 0.12
USP54-211ENST00000474929 CHMP7Q8WUX9 453 aaPredicted RBP15.76■□□□□ 0.11
USP54-211ENST00000474929 POLA1P09884 1462 aaPredicted RBP15.76■□□□□ 0.11
USP54-211ENST00000474929 SYNJ2O15056 1496 aa15.74■□□□□ 0.11
USP54-211ENST00000474929 KIF13AQ9H1H9 1805 aa15.7■□□□□ 0.1
USP54-211ENST00000474929 ERCC6L2Q5T890 1561 aa15.68■□□□□ 0.1
USP54-211ENST00000474929 GRIN2BQ13224 1484 aa15.68■□□□□ 0.1
USP54-211ENST00000474929 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
USP54-211ENST00000474929 SOGA1O94964 1423 aa15.64■□□□□ 0.09
USP54-211ENST00000474929 KDM4FA0A1W2PPD8 638 aa15.63■□□□□ 0.09
USP54-211ENST00000474929 RAD54L2Q9Y4B4 1467 aa15.61■□□□□ 0.09
USP54-211ENST00000474929 KDM6BO15054 1643 aa15.61■□□□□ 0.09
USP54-211ENST00000474929 CCDC88BA6NC98 1476 aa15.59■□□□□ 0.09
USP54-211ENST00000474929 PBRM1Q86U86 1689 aa15.55■□□□□ 0.08
USP54-211ENST00000474929 ABCC10Q5T3U5 1492 aa15.55■□□□□ 0.08
USP54-211ENST00000474929 CEP170Q5SW79 1584 aa15.53■□□□□ 0.08
USP54-211ENST00000474929 FGD5Q6ZNL6 1462 aa15.52■□□□□ 0.08
USP54-211ENST00000474929 HECW2Q9P2P5 1572 aa15.52■□□□□ 0.07
USP54-211ENST00000474929 MAPKBP1O60336 1514 aa15.51■□□□□ 0.07
USP54-211ENST00000474929 FBXO41Q8TF61 875 aa15.5■□□□□ 0.07
USP54-211ENST00000474929 DIP2BQ9P265 1576 aa15.49■□□□□ 0.07
USP54-211ENST00000474929 SHROOM2Q13796 1616 aa15.49■□□□□ 0.07
USP54-211ENST00000474929 FAM69CQ0P6D2 419 aa15.48■□□□□ 0.07
USP54-211ENST00000474929 GRIN2AQ12879 1464 aa15.46■□□□□ 0.07
USP54-211ENST00000474929 ADGRL1O94910 1474 aa15.45■□□□□ 0.06
USP54-211ENST00000474929 NUP160Q12769 1436 aa15.44■□□□□ 0.06
USP54-211ENST00000474929 NPM1P06748 294 aaKnown RBP eCLIP15.43■□□□□ 0.06
USP54-211ENST00000474929 ABCA5Q8WWZ7 1642 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms