RNA–Protein interactions for RNA: ENST00000473879.1

BRAT1-205, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 3

Gene BRAT1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-205ENST00000473879 NISCHQ9Y2I1 1504 aa31.99■■■□□ 2.71
BRAT1-205ENST00000473879 CCDC180Q9P1Z9 1646 aa28.52■■■□□ 2.16
BRAT1-205ENST00000473879 ABCC9O60706 1549 aa27.92■■■□□ 2.06
BRAT1-205ENST00000473879 RB1CC1Q8TDY2 1594 aa26.85■■□□□ 1.89
BRAT1-205ENST00000473879 NACADO15069 1562 aa26.78■■□□□ 1.88
BRAT1-205ENST00000473879 ZCCHC6Q5VYS8 1495 aaKnown RBP26.74■■□□□ 1.87
BRAT1-205ENST00000473879 DCAF8L2P0C7V8 631 aa26.69■■□□□ 1.86
BRAT1-205ENST00000473879 MYO15BQ96JP2 1530 aa26.68■■□□□ 1.86
BRAT1-205ENST00000473879 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
BRAT1-205ENST00000473879 UNC13AQ9UPW8 1703 aa26.34■■□□□ 1.81
BRAT1-205ENST00000473879 PABPN1Q86U42 306 aaKnown RBP eCLIP26.08■■□□□ 1.77
BRAT1-205ENST00000473879 BICRAQ9NZM4 1560 aa26.06■■□□□ 1.76
BRAT1-205ENST00000473879 DNAJC5BQ9UF47 199 aa25.98■■□□□ 1.75
BRAT1-205ENST00000473879 SCRIBQ14160 1630 aa25.94■■□□□ 1.74
BRAT1-205ENST00000473879 SHROOM4Q9ULL8 1493 aa25.8■■□□□ 1.72
BRAT1-205ENST00000473879 EIF4G1Q04637 1599 aaKnown RBP25.38■■□□□ 1.65
BRAT1-205ENST00000473879 CC2D2AQ9P2K1 1620 aa25.31■■□□□ 1.64
BRAT1-205ENST00000473879 CECR2Q9BXF3 1484 aa25.13■■□□□ 1.61
BRAT1-205ENST00000473879 SMARCA4P51532 1647 aa24.82■■□□□ 1.56
BRAT1-205ENST00000473879 BAZ1AQ9NRL2 1556 aaPredicted RBP24.76■■□□□ 1.55
BRAT1-205ENST00000473879 NCAPD3P42695 1498 aa24.72■■□□□ 1.55
BRAT1-205ENST00000473879 ATAD2BQ9ULI0 1458 aa24.69■■□□□ 1.54
BRAT1-205ENST00000473879 PEG3Q9GZU2 1588 aa24.67■■□□□ 1.54
BRAT1-205ENST00000473879 SMARCA2P51531 1590 aa24.66■■□□□ 1.54
BRAT1-205ENST00000473879 MROH2BQ7Z745 1585 aa24.63■■□□□ 1.53
BRAT1-205ENST00000473879 HMGXB3Q12766 1538 aa24.61■■□□□ 1.53
BRAT1-205ENST00000473879 BAZ1BQ9UIG0 1483 aaKnown RBP24.45■■□□□ 1.51
BRAT1-205ENST00000473879 RSF1Q96T23 1441 aaPredicted RBP24.39■■□□□ 1.5
BRAT1-205ENST00000473879 WIZO95785 1651 aa24.34■■□□□ 1.49
BRAT1-205ENST00000473879 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
BRAT1-205ENST00000473879 NESP48681 1621 aa24.13■■□□□ 1.45
BRAT1-205ENST00000473879 LAMC3Q9Y6N6 1575 aa24.1■■□□□ 1.45
BRAT1-205ENST00000473879 ERCC6Q03468 1493 aa24.09■■□□□ 1.45
BRAT1-205ENST00000473879 CADPSQ9ULU8 1353 aa23.99■■□□□ 1.43
BRAT1-205ENST00000473879 CUX2O14529 1486 aa23.94■■□□□ 1.42
BRAT1-205ENST00000473879 KIF21AQ7Z4S6 1674 aa23.93■■□□□ 1.42
BRAT1-205ENST00000473879 PDS5BQ9NTI5 1447 aa23.93■■□□□ 1.42
BRAT1-205ENST00000473879 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
BRAT1-205ENST00000473879 CFTRP13569 1480 aa23.81■■□□□ 1.4
BRAT1-205ENST00000473879 CCDC88BA6NC98 1476 aa23.8■■□□□ 1.4
BRAT1-205ENST00000473879 PRDM2Q13029 1718 aa23.74■■□□□ 1.39
BRAT1-205ENST00000473879 DNAJC5Q9H3Z4 198 aa23.69■■□□□ 1.38
BRAT1-205ENST00000473879 FANCD2Q9BXW9 1451 aa23.68■■□□□ 1.38
BRAT1-205ENST00000473879 MRC2Q9UBG0 1479 aa23.68■■□□□ 1.38
BRAT1-205ENST00000473879 CEP164Q9UPV0 1460 aa23.68■■□□□ 1.38
BRAT1-205ENST00000473879 WDR62O43379 1518 aa23.64■■□□□ 1.38
BRAT1-205ENST00000473879 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
BRAT1-205ENST00000473879 URB2Q14146 1524 aaKnown RBP23.46■■□□□ 1.35
BRAT1-205ENST00000473879 ABCC8Q09428 1581 aa23.31■■□□□ 1.32
BRAT1-205ENST00000473879 TOPBP1Q92547 1522 aa23.28■■□□□ 1.32
BRAT1-205ENST00000473879 DNMBPQ6XZF7 1577 aa23.28■■□□□ 1.32
BRAT1-205ENST00000473879 IFT140Q96RY7 1462 aa23.19■■□□□ 1.3
BRAT1-205ENST00000473879 CUX1P39880 1505 aa23.1■■□□□ 1.29
BRAT1-205ENST00000473879 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
BRAT1-205ENST00000473879 POLA1P09884 1462 aaPredicted RBP23.08■■□□□ 1.29
BRAT1-205ENST00000473879 ZNF608Q9ULD9 1512 aaPredicted RBP23.08■■□□□ 1.28
BRAT1-205ENST00000473879 EIF4G3O43432 1585 aaKnown RBP23.06■■□□□ 1.28
BRAT1-205ENST00000473879 BIVM-ERCC5R4GMW8 1640 aa23■■□□□ 1.27
BRAT1-205ENST00000473879 SOGA1O94964 1423 aa22.99■■□□□ 1.27
BRAT1-205ENST00000473879 FGD5Q6ZNL6 1462 aa22.99■■□□□ 1.27
BRAT1-205ENST00000473879 RAD54L2Q9Y4B4 1467 aa22.97■■□□□ 1.27
BRAT1-205ENST00000473879 TOP2BQ02880 1626 aa22.97■■□□□ 1.27
BRAT1-205ENST00000473879 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
BRAT1-205ENST00000473879 AQRO60306 1485 aaKnown RBP eCLIP22.94■■□□□ 1.261e-7■■■■□ 22.6
BRAT1-205ENST00000473879 WDR97A6NE52 1622 aa22.93■■□□□ 1.26
BRAT1-205ENST00000473879 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
BRAT1-205ENST00000473879 OSCARQ8IYS5 282 aa22.92■■□□□ 1.26
BRAT1-205ENST00000473879 TDRD9Q8NDG6 1382 aaKnown RBP22.88■■□□□ 1.25
BRAT1-205ENST00000473879 CHD1O14646 1710 aa22.82■■□□□ 1.24
BRAT1-205ENST00000473879 ABCA10Q8WWZ4 1543 aa22.8■■□□□ 1.24
BRAT1-205ENST00000473879 PBRM1Q86U86 1689 aa22.77■■□□□ 1.24
BRAT1-205ENST00000473879 ABCA5Q8WWZ7 1642 aa22.76■■□□□ 1.23
BRAT1-205ENST00000473879 GRIN2BQ13224 1484 aa22.74■■□□□ 1.23
BRAT1-205ENST00000473879 SNAPC4Q5SXM2 1469 aa22.73■■□□□ 1.23
BRAT1-205ENST00000473879 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
BRAT1-205ENST00000473879 MAGI1Q96QZ7 1491 aaPredicted RBP22.7■■□□□ 1.22
BRAT1-205ENST00000473879 FBLN2P98095 1184 aa22.69■■□□□ 1.22
BRAT1-205ENST00000473879 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
BRAT1-205ENST00000473879 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
BRAT1-205ENST00000473879 SYNJ2O15056 1496 aa22.61■■□□□ 1.21
BRAT1-205ENST00000473879 RIMBP3CA6NJZ7 1639 aa22.59■■□□□ 1.21
BRAT1-205ENST00000473879 RIMBP3BA6NNM3 1639 aa22.59■■□□□ 1.21
BRAT1-205ENST00000473879 RIMBP3Q9UFD9 1639 aa22.59■■□□□ 1.21
BRAT1-205ENST00000473879 ADAMTS12P58397 1594 aa22.55■■□□□ 1.2
BRAT1-205ENST00000473879 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
BRAT1-205ENST00000473879 ERICH3Q5RHP9 1530 aa22.53■■□□□ 1.2
BRAT1-205ENST00000473879 CLASP1Q7Z460 1538 aa22.53■■□□□ 1.2
BRAT1-205ENST00000473879 FHAD1B1AJZ9 1412 aa22.47■■□□□ 1.19
BRAT1-205ENST00000473879 GRIN2AQ12879 1464 aa22.44■■□□□ 1.18
BRAT1-205ENST00000473879 KIF27Q86VH2 1401 aa22.41■■□□□ 1.18
BRAT1-205ENST00000473879 CEP170Q5SW79 1584 aa22.38■■□□□ 1.17
BRAT1-205ENST00000473879 NUP160Q12769 1436 aa22.37■■□□□ 1.17
BRAT1-205ENST00000473879 IGF1RP08069 1367 aa22.35■■□□□ 1.17
BRAT1-205ENST00000473879 ARAP1Q96P48 1450 aa22.34■■□□□ 1.17
BRAT1-205ENST00000473879 CUL7Q14999 1698 aa22.34■■□□□ 1.17
BRAT1-205ENST00000473879 CHIC1Q5VXU3 224 aa22.34■■□□□ 1.17
BRAT1-205ENST00000473879 CYB5RLQ6IPT4 315 aa22.33■■□□□ 1.17
BRAT1-205ENST00000473879 RUSC2Q8N2Y8 1516 aa22.28■■□□□ 1.16
BRAT1-205ENST00000473879 SHROOM2Q13796 1616 aa22.27■■□□□ 1.16
BRAT1-205ENST00000473879 CARMIL1Q5VZK9 1371 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms