RNA–Protein interactions for RNA: ENST00000473270.1

APTX-218, Transcript of aprataxin, humanhuman

TSL 2

Gene APTX, Length 645 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-218ENST00000473270 NISCHQ9Y2I1 1504 aa48.36■■■■■ 5.33
APTX-218ENST00000473270 ABCC9O60706 1549 aa43.57■■■■■ 4.56
APTX-218ENST00000473270 CCDC180Q9P1Z9 1646 aa43.44■■■■■ 4.54
APTX-218ENST00000473270 RB1CC1Q8TDY2 1594 aa41.48■■■■■ 4.23
APTX-218ENST00000473270 DCAF8L2P0C7V8 631 aa41.16■■■■■ 4.18
APTX-218ENST00000473270 NACADO15069 1562 aa41.14■■■■■ 4.18
APTX-218ENST00000473270 DNAJC5BQ9UF47 199 aa40.8■■■■■ 4.12
APTX-218ENST00000473270 PABPN1Q86U42 306 aaKnown RBP eCLIP40.59■■■■■ 4.09
APTX-218ENST00000473270 MYO15BQ96JP2 1530 aa40.5■■■■■ 4.07
APTX-218ENST00000473270 UNC13AQ9UPW8 1703 aa40.3■■■■■ 4.04
APTX-218ENST00000473270 BICRAQ9NZM4 1560 aa40.06■■■■■ 4
APTX-218ENST00000473270 ZCCHC6Q5VYS8 1495 aaKnown RBP40.03■■■■■ 4
APTX-218ENST00000473270 DCAF1Q9Y4B6 1507 aa39.94■■■■□ 3.98
APTX-218ENST00000473270 SHROOM4Q9ULL8 1493 aa39.71■■■■□ 3.95
APTX-218ENST00000473270 SCRIBQ14160 1630 aa39.6■■■■□ 3.93
APTX-218ENST00000473270 CC2D2AQ9P2K1 1620 aa39.3■■■■□ 3.88
APTX-218ENST00000473270 CECR2Q9BXF3 1484 aa39.29■■■■□ 3.88
APTX-218ENST00000473270 EIF4G1Q04637 1599 aaKnown RBP39.21■■■■□ 3.87
APTX-218ENST00000473270 NCAPD3P42695 1498 aa37.95■■■■□ 3.67
APTX-218ENST00000473270 ATAD2BQ9ULI0 1458 aa37.81■■■■□ 3.64
APTX-218ENST00000473270 SMARCA2P51531 1590 aa37.79■■■■□ 3.64
APTX-218ENST00000473270 ERCC6Q03468 1493 aa37.77■■■■□ 3.64
APTX-218ENST00000473270 SMARCA4P51532 1647 aa37.73■■■■□ 3.63
APTX-218ENST00000473270 DNAJC5Q9H3Z4 198 aa37.69■■■■□ 3.62
APTX-218ENST00000473270 HMGXB3Q12766 1538 aa37.66■■■■□ 3.62
APTX-218ENST00000473270 CUX2O14529 1486 aa37.63■■■■□ 3.61
APTX-218ENST00000473270 BAZ1AQ9NRL2 1556 aaPredicted RBP37.62■■■■□ 3.61
APTX-218ENST00000473270 BAZ1BQ9UIG0 1483 aaKnown RBP37.54■■■■□ 3.6
APTX-218ENST00000473270 PEG3Q9GZU2 1588 aa37.33■■■■□ 3.57
APTX-218ENST00000473270 NESP48681 1621 aa37.32■■■■□ 3.57
APTX-218ENST00000473270 MROH2BQ7Z745 1585 aa37.21■■■■□ 3.55
APTX-218ENST00000473270 LAMC3Q9Y6N6 1575 aa37.15■■■■□ 3.54
APTX-218ENST00000473270 PDS5BQ9NTI5 1447 aa37.04■■■■□ 3.52
APTX-218ENST00000473270 THOC2Q8NI27 1593 aaKnown RBP36.92■■■■□ 3.5
APTX-218ENST00000473270 CADPSQ9ULU8 1353 aa36.85■■■■□ 3.49
APTX-218ENST00000473270 KIF21AQ7Z4S6 1674 aa36.83■■■■□ 3.49
APTX-218ENST00000473270 WIZO95785 1651 aa36.77■■■■□ 3.48
APTX-218ENST00000473270 MRC2Q9UBG0 1479 aa36.63■■■■□ 3.45
APTX-218ENST00000473270 CEP164Q9UPV0 1460 aa36.51■■■■□ 3.44
APTX-218ENST00000473270 WDR62O43379 1518 aa36.47■■■■□ 3.43
APTX-218ENST00000473270 RSF1Q96T23 1441 aaPredicted RBP36.46■■■■□ 3.43
APTX-218ENST00000473270 FANCD2Q9BXW9 1451 aa36.43■■■■□ 3.42
APTX-218ENST00000473270 TOP2AP11388 1531 aaKnown RBP36.36■■■■□ 3.41
APTX-218ENST00000473270 CFTRP13569 1480 aa36.36■■■■□ 3.41
APTX-218ENST00000473270 TRIM41Q8WV44 630 aa36.14■■■■□ 3.38
APTX-218ENST00000473270 URB2Q14146 1524 aaKnown RBP36.03■■■■□ 3.36
APTX-218ENST00000473270 OSCARQ8IYS5 282 aa36.01■■■■□ 3.36
APTX-218ENST00000473270 CCDC88BA6NC98 1476 aa35.94■■■■□ 3.34
APTX-218ENST00000473270 PRDM2Q13029 1718 aa35.94■■■■□ 3.34
APTX-218ENST00000473270 IFT140Q96RY7 1462 aa35.77■■■■□ 3.32
APTX-218ENST00000473270 ABCC8Q09428 1581 aa35.73■■■■□ 3.31
APTX-218ENST00000473270 TOPBP1Q92547 1522 aa35.67■■■■□ 3.3
APTX-218ENST00000473270 ZNF608Q9ULD9 1512 aaPredicted RBP35.6■■■■□ 3.29
APTX-218ENST00000473270 DNMBPQ6XZF7 1577 aa35.55■■■■□ 3.28
APTX-218ENST00000473270 EIF4G3O43432 1585 aaKnown RBP35.43■■■■□ 3.26
APTX-218ENST00000473270 RIMBP3CA6NJZ7 1639 aa35.35■■■■□ 3.25
APTX-218ENST00000473270 RIMBP3BA6NNM3 1639 aa35.35■■■■□ 3.25
APTX-218ENST00000473270 RIMBP3Q9UFD9 1639 aa35.35■■■■□ 3.25
APTX-218ENST00000473270 AQRO60306 1485 aaKnown RBP eCLIP35.35■■■■□ 3.255e-8■■□□□ 13.4
APTX-218ENST00000473270 FBLN2P98095 1184 aa35.34■■■■□ 3.25
APTX-218ENST00000473270 POLA1P09884 1462 aaPredicted RBP35.3■■■■□ 3.24
APTX-218ENST00000473270 TARBP1Q13395 1621 aaKnown RBP35.29■■■■□ 3.24
APTX-218ENST00000473270 ARHGEF11O15085 1522 aa35.27■■■■□ 3.24
APTX-218ENST00000473270 SOGA1O94964 1423 aa35.24■■■■□ 3.23
APTX-218ENST00000473270 RAD54L2Q9Y4B4 1467 aa35.17■■■■□ 3.22
APTX-218ENST00000473270 CHD1O14646 1710 aa35.16■■■■□ 3.22
APTX-218ENST00000473270 CYB5RLQ6IPT4 315 aa35.15■■■■□ 3.22
APTX-218ENST00000473270 TDRD9Q8NDG6 1382 aaKnown RBP35.14■■■■□ 3.22
APTX-218ENST00000473270 FGD5Q6ZNL6 1462 aa35.09■■■■□ 3.21
APTX-218ENST00000473270 CHMP7Q8WUX9 453 aaPredicted RBP35.05■■■■□ 3.2
APTX-218ENST00000473270 WDR97A6NE52 1622 aa35.05■■■■□ 3.2
APTX-218ENST00000473270 SNAPC4Q5SXM2 1469 aa34.99■■■■□ 3.19
APTX-218ENST00000473270 SUPT5HO00267 1087 aaKnown RBP34.99■■■■□ 3.19
APTX-218ENST00000473270 CUX1P39880 1505 aa34.99■■■■□ 3.19
APTX-218ENST00000473270 GRIN2BQ13224 1484 aa34.93■■■■□ 3.18
APTX-218ENST00000473270 MAGI1Q96QZ7 1491 aaPredicted RBP34.93■■■■□ 3.18
APTX-218ENST00000473270 TRHP20396 242 aaPredicted RBP34.91■■■■□ 3.18
APTX-218ENST00000473270 ARAP1Q96P48 1450 aa34.87■■■■□ 3.17
APTX-218ENST00000473270 SYNJ1O43426 1573 aa34.87■■■■□ 3.17
APTX-218ENST00000473270 SYNJ2O15056 1496 aa34.81■■■■□ 3.16
APTX-218ENST00000473270 GAPVD1Q14C86 1478 aa34.79■■■■□ 3.16
APTX-218ENST00000473270 CLASP1Q7Z460 1538 aa34.74■■■■□ 3.15
APTX-218ENST00000473270 ABCA10Q8WWZ4 1543 aa34.69■■■■□ 3.14
APTX-218ENST00000473270 PBRM1Q86U86 1689 aa34.69■■■■□ 3.14
APTX-218ENST00000473270 WRNQ14191 1432 aaPredicted RBP eCLIP34.65■■■■□ 3.14
APTX-218ENST00000473270 ABCA5Q8WWZ7 1642 aa34.57■■■■□ 3.12
APTX-218ENST00000473270 TOP2BQ02880 1626 aa34.44■■■■□ 3.1
APTX-218ENST00000473270 GRIN2AQ12879 1464 aa34.44■■■■□ 3.1
APTX-218ENST00000473270 BIVM-ERCC5R4GMW8 1640 aa34.41■■■■□ 3.1
APTX-218ENST00000473270 FHAD1B1AJZ9 1412 aa34.36■■■■□ 3.09
APTX-218ENST00000473270 ADAMTS12P58397 1594 aa34.35■■■■□ 3.09
APTX-218ENST00000473270 ERICH3Q5RHP9 1530 aa34.29■■■■□ 3.08
APTX-218ENST00000473270 NUP160Q12769 1436 aa34.28■■■■□ 3.08
APTX-218ENST00000473270 CEP170Q5SW79 1584 aa34.23■■■■□ 3.07
APTX-218ENST00000473270 ERCC6L2Q5T890 1561 aa34.14■■■■□ 3.06
APTX-218ENST00000473270 SHROOM2Q13796 1616 aa34.08■■■■□ 3.05
APTX-218ENST00000473270 JPH4Q96JJ6 628 aa34.07■■■■□ 3.04
APTX-218ENST00000473270 PRG4Q92954 1404 aaPredicted RBP34.05■■■■□ 3.04
APTX-218ENST00000473270 AEBP2Q6ZN18 517 aaPredicted RBP34.04■■■■□ 3.04
APTX-218ENST00000473270 NPM1P06748 294 aaKnown RBP eCLIP33.96■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms