RNA–Protein interactions for RNA: ENST00000470396.1

PSMD4-210, Transcript of proteasome 26S subunit, non-ATPase 4, humanhuman

TSL 1 (best)

Gene PSMD4, Length 338 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMD4-210ENST00000470396 NISCHQ9Y2I1 1504 aa16.74■□□□□ 0.27
PSMD4-210ENST00000470396 CCDC180Q9P1Z9 1646 aa14.84□□□□□ -0.03
PSMD4-210ENST00000470396 ABCC9O60706 1549 aa14.51□□□□□ -0.09
PSMD4-210ENST00000470396 ZCCHC6Q5VYS8 1495 aaKnown RBP13.96□□□□□ -0.17
PSMD4-210ENST00000470396 NACADO15069 1562 aa13.94□□□□□ -0.18
PSMD4-210ENST00000470396 RB1CC1Q8TDY2 1594 aa13.94□□□□□ -0.18
PSMD4-210ENST00000470396 DCAF8L2P0C7V8 631 aa13.88□□□□□ -0.19
PSMD4-210ENST00000470396 MYO15BQ96JP2 1530 aa13.88□□□□□ -0.19
PSMD4-210ENST00000470396 DNAJC5BQ9UF47 199 aa13.84□□□□□ -0.19
PSMD4-210ENST00000470396 DCAF1Q9Y4B6 1507 aa13.84□□□□□ -0.19
PSMD4-210ENST00000470396 UNC13AQ9UPW8 1703 aa13.7□□□□□ -0.22
PSMD4-210ENST00000470396 BICRAQ9NZM4 1560 aa13.61□□□□□ -0.23
PSMD4-210ENST00000470396 SCRIBQ14160 1630 aa13.57□□□□□ -0.24
PSMD4-210ENST00000470396 PABPN1Q86U42 306 aaKnown RBP eCLIP13.57□□□□□ -0.24
PSMD4-210ENST00000470396 SHROOM4Q9ULL8 1493 aa13.38□□□□□ -0.27
PSMD4-210ENST00000470396 EIF4G1Q04637 1599 aaKnown RBP13.2□□□□□ -0.3
PSMD4-210ENST00000470396 CC2D2AQ9P2K1 1620 aa13.14□□□□□ -0.31
PSMD4-210ENST00000470396 CECR2Q9BXF3 1484 aa13.07□□□□□ -0.32
PSMD4-210ENST00000470396 DNAJC5Q9H3Z4 198 aa13.05□□□□□ -0.32
PSMD4-210ENST00000470396 SMARCA4P51532 1647 aa12.99□□□□□ -0.33
PSMD4-210ENST00000470396 BAZ1AQ9NRL2 1556 aaPredicted RBP12.94□□□□□ -0.34
PSMD4-210ENST00000470396 MROH2BQ7Z745 1585 aa12.92□□□□□ -0.34
PSMD4-210ENST00000470396 ATAD2BQ9ULI0 1458 aa12.91□□□□□ -0.34
PSMD4-210ENST00000470396 NCAPD3P42695 1498 aa12.89□□□□□ -0.35
PSMD4-210ENST00000470396 PEG3Q9GZU2 1588 aa12.87□□□□□ -0.35
PSMD4-210ENST00000470396 SMARCA2P51531 1590 aa12.86□□□□□ -0.35
PSMD4-210ENST00000470396 HMGXB3Q12766 1538 aa12.83□□□□□ -0.36
PSMD4-210ENST00000470396 WIZO95785 1651 aa12.78□□□□□ -0.36
PSMD4-210ENST00000470396 RSF1Q96T23 1441 aaPredicted RBP12.78□□□□□ -0.36
PSMD4-210ENST00000470396 BAZ1BQ9UIG0 1483 aaKnown RBP12.77□□□□□ -0.37
PSMD4-210ENST00000470396 TOP2AP11388 1531 aaKnown RBP12.62□□□□□ -0.39
PSMD4-210ENST00000470396 NESP48681 1621 aa12.61□□□□□ -0.39
PSMD4-210ENST00000470396 LAMC3Q9Y6N6 1575 aa12.52□□□□□ -0.41
PSMD4-210ENST00000470396 CADPSQ9ULU8 1353 aa12.5□□□□□ -0.41
PSMD4-210ENST00000470396 CCDC88BA6NC98 1476 aa12.48□□□□□ -0.41
PSMD4-210ENST00000470396 ERCC6Q03468 1493 aa12.46□□□□□ -0.42
PSMD4-210ENST00000470396 CFTRP13569 1480 aa12.45□□□□□ -0.42
PSMD4-210ENST00000470396 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
PSMD4-210ENST00000470396 SUPT5HO00267 1087 aaKnown RBP12.41□□□□□ -0.42
PSMD4-210ENST00000470396 THOC2Q8NI27 1593 aaKnown RBP12.4□□□□□ -0.42
PSMD4-210ENST00000470396 PDS5BQ9NTI5 1447 aa12.4□□□□□ -0.42
PSMD4-210ENST00000470396 CUX2O14529 1486 aa12.38□□□□□ -0.43
PSMD4-210ENST00000470396 FANCD2Q9BXW9 1451 aa12.36□□□□□ -0.43
PSMD4-210ENST00000470396 PRDM2Q13029 1718 aa12.34□□□□□ -0.43
PSMD4-210ENST00000470396 CEP164Q9UPV0 1460 aa12.32□□□□□ -0.44
PSMD4-210ENST00000470396 MRC2Q9UBG0 1479 aa12.31□□□□□ -0.44
PSMD4-210ENST00000470396 WDR62O43379 1518 aa12.3□□□□□ -0.44
PSMD4-210ENST00000470396 URB2Q14146 1524 aaKnown RBP12.27□□□□□ -0.44
PSMD4-210ENST00000470396 TOPBP1Q92547 1522 aa12.18□□□□□ -0.46
PSMD4-210ENST00000470396 TRIM41Q8WV44 630 aa12.18□□□□□ -0.46
PSMD4-210ENST00000470396 DNMBPQ6XZF7 1577 aa12.15□□□□□ -0.46
PSMD4-210ENST00000470396 CUX1P39880 1505 aa12.12□□□□□ -0.47
PSMD4-210ENST00000470396 ABCC8Q09428 1581 aa12.11□□□□□ -0.47
PSMD4-210ENST00000470396 POLA1P09884 1462 aaPredicted RBP12.08□□□□□ -0.47
PSMD4-210ENST00000470396 TARBP1Q13395 1621 aaKnown RBP12.07□□□□□ -0.48
PSMD4-210ENST00000470396 IFT140Q96RY7 1462 aa12.07□□□□□ -0.48
PSMD4-210ENST00000470396 ZNF608Q9ULD9 1512 aaPredicted RBP12.06□□□□□ -0.48
PSMD4-210ENST00000470396 FGD5Q6ZNL6 1462 aa12.05□□□□□ -0.48
PSMD4-210ENST00000470396 RAD54L2Q9Y4B4 1467 aa12.04□□□□□ -0.48
PSMD4-210ENST00000470396 SYNJ1O43426 1573 aa12.03□□□□□ -0.48
PSMD4-210ENST00000470396 WRNQ14191 1432 aaPredicted RBP eCLIP12.01□□□□□ -0.49
PSMD4-210ENST00000470396 SOGA1O94964 1423 aa12□□□□□ -0.49
PSMD4-210ENST00000470396 EIF4G3O43432 1585 aaKnown RBP12□□□□□ -0.49
PSMD4-210ENST00000470396 TOP2BQ02880 1626 aa12□□□□□ -0.49
PSMD4-210ENST00000470396 BIVM-ERCC5R4GMW8 1640 aa12□□□□□ -0.49
PSMD4-210ENST00000470396 WDR97A6NE52 1622 aa11.98□□□□□ -0.49
PSMD4-210ENST00000470396 AQRO60306 1485 aaKnown RBP eCLIP11.98□□□□□ -0.49
PSMD4-210ENST00000470396 TDRD9Q8NDG6 1382 aaKnown RBP11.95□□□□□ -0.5
PSMD4-210ENST00000470396 ABCA10Q8WWZ4 1543 aa11.93□□□□□ -0.5
PSMD4-210ENST00000470396 ABCA5Q8WWZ7 1642 aa11.9□□□□□ -0.5
PSMD4-210ENST00000470396 GAPVD1Q14C86 1478 aa11.87□□□□□ -0.51
PSMD4-210ENST00000470396 SNAPC4Q5SXM2 1469 aa11.86□□□□□ -0.51
PSMD4-210ENST00000470396 PBRM1Q86U86 1689 aa11.86□□□□□ -0.51
PSMD4-210ENST00000470396 GRIN2BQ13224 1484 aa11.85□□□□□ -0.51
PSMD4-210ENST00000470396 CHD1O14646 1710 aa11.84□□□□□ -0.51
PSMD4-210ENST00000470396 MAGI1Q96QZ7 1491 aaPredicted RBP11.83□□□□□ -0.52
PSMD4-210ENST00000470396 OSCARQ8IYS5 282 aa11.8□□□□□ -0.52
PSMD4-210ENST00000470396 SYNJ2O15056 1496 aa11.78□□□□□ -0.52
PSMD4-210ENST00000470396 ADAMTS12P58397 1594 aa11.78□□□□□ -0.52
PSMD4-210ENST00000470396 ERICH3Q5RHP9 1530 aa11.77□□□□□ -0.52
PSMD4-210ENST00000470396 FBLN2P98095 1184 aa11.75□□□□□ -0.53
PSMD4-210ENST00000470396 IGF1RP08069 1367 aa11.73□□□□□ -0.53
PSMD4-210ENST00000470396 CLASP1Q7Z460 1538 aa11.73□□□□□ -0.53
PSMD4-210ENST00000470396 KIF27Q86VH2 1401 aa11.73□□□□□ -0.53
PSMD4-210ENST00000470396 CHMP7Q8WUX9 453 aaPredicted RBP11.73□□□□□ -0.53
PSMD4-210ENST00000470396 GRIN2AQ12879 1464 aa11.72□□□□□ -0.53
PSMD4-210ENST00000470396 FHAD1B1AJZ9 1412 aa11.72□□□□□ -0.53
PSMD4-210ENST00000470396 RUSC2Q8N2Y8 1516 aa11.71□□□□□ -0.53
PSMD4-210ENST00000470396 CEP170Q5SW79 1584 aa11.69□□□□□ -0.54
PSMD4-210ENST00000470396 NUP160Q12769 1436 aa11.69□□□□□ -0.54
PSMD4-210ENST00000470396 ARHGEF11O15085 1522 aa11.68□□□□□ -0.54
PSMD4-210ENST00000470396 RIMBP3CA6NJZ7 1639 aa11.68□□□□□ -0.54
PSMD4-210ENST00000470396 RIMBP3BA6NNM3 1639 aa11.68□□□□□ -0.54
PSMD4-210ENST00000470396 RIMBP3Q9UFD9 1639 aa11.68□□□□□ -0.54
PSMD4-210ENST00000470396 CUL7Q14999 1698 aa11.65□□□□□ -0.54
PSMD4-210ENST00000470396 CHIC1Q5VXU3 224 aa11.63□□□□□ -0.55
PSMD4-210ENST00000470396 CARMIL1Q5VZK9 1371 aa11.62□□□□□ -0.55
PSMD4-210ENST00000470396 SHROOM2Q13796 1616 aa11.6□□□□□ -0.55
PSMD4-210ENST00000470396 ERCC6L2Q5T890 1561 aa11.6□□□□□ -0.55
PSMD4-210ENST00000470396 ARAP1Q96P48 1450 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms