RNA–Protein interactions for RNA: ENST00000470191.5

CCDC171-204, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-204ENST00000470191 NISCHQ9Y2I1 1504 aa23.23■■□□□ 1.31
CCDC171-204ENST00000470191 AEBP2Q6ZN18 517 aaPredicted RBP21.76■■□□□ 1.07
CCDC171-204ENST00000470191 ABCC9O60706 1549 aa21.39■■□□□ 1.01
CCDC171-204ENST00000470191 CCDC180Q9P1Z9 1646 aa21.02■□□□□ 0.96
CCDC171-204ENST00000470191 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
CCDC171-204ENST00000470191 DNAJC5BQ9UF47 199 aa20.29■□□□□ 0.84
CCDC171-204ENST00000470191 RB1CC1Q8TDY2 1594 aa20.16■□□□□ 0.82
CCDC171-204ENST00000470191 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
CCDC171-204ENST00000470191 NACADO15069 1562 aa19.89■□□□□ 0.77
CCDC171-204ENST00000470191 PABPN1Q86U42 306 aaKnown RBP eCLIP19.86■□□□□ 0.77
CCDC171-204ENST00000470191 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.77
CCDC171-204ENST00000470191 BICRAQ9NZM4 1560 aa19.59■□□□□ 0.73
CCDC171-204ENST00000470191 MYO15BQ96JP2 1530 aa19.41■□□□□ 0.7
CCDC171-204ENST00000470191 CC2D2AQ9P2K1 1620 aa19.29■□□□□ 0.68
CCDC171-204ENST00000470191 CECR2Q9BXF3 1484 aa19.24■□□□□ 0.67
CCDC171-204ENST00000470191 SCRIBQ14160 1630 aa19.23■□□□□ 0.67
CCDC171-204ENST00000470191 ZCCHC6Q5VYS8 1495 aaKnown RBP19.17■□□□□ 0.66
CCDC171-204ENST00000470191 SHROOM4Q9ULL8 1493 aa19.15■□□□□ 0.66
CCDC171-204ENST00000470191 EIF4G1Q04637 1599 aaKnown RBP19.13■□□□□ 0.65
CCDC171-204ENST00000470191 DCAF1Q9Y4B6 1507 aa19.09■□□□□ 0.65
CCDC171-204ENST00000470191 DNAJC5Q9H3Z4 198 aa18.8■□□□□ 0.6
CCDC171-204ENST00000470191 SENP3Q9H4L4 574 aaPredicted RBP18.78■□□□□ 0.6
CCDC171-204ENST00000470191 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
CCDC171-204ENST00000470191 CUX2O14529 1486 aa18.46■□□□□ 0.54
CCDC171-204ENST00000470191 PHF23Q9BUL5 403 aaPredicted RBP18.4■□□□□ 0.54
CCDC171-204ENST00000470191 NCAPD3P42695 1498 aa18.33■□□□□ 0.53
CCDC171-204ENST00000470191 NESP48681 1621 aa18.29■□□□□ 0.52
CCDC171-204ENST00000470191 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
CCDC171-204ENST00000470191 SMARCA4P51532 1647 aa18.24■□□□□ 0.51
CCDC171-204ENST00000470191 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
CCDC171-204ENST00000470191 HMGXB3Q12766 1538 aa18.2■□□□□ 0.5
CCDC171-204ENST00000470191 THOC2Q8NI27 1593 aaKnown RBP18.13■□□□□ 0.49
CCDC171-204ENST00000470191 BAZ1BQ9UIG0 1483 aaKnown RBP18.13■□□□□ 0.49
CCDC171-204ENST00000470191 KIF21AQ7Z4S6 1674 aa18.09■□□□□ 0.49
CCDC171-204ENST00000470191 BAZ1AQ9NRL2 1556 aaPredicted RBP18.06■□□□□ 0.48
CCDC171-204ENST00000470191 LAMC3Q9Y6N6 1575 aa18.04■□□□□ 0.48
CCDC171-204ENST00000470191 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
CCDC171-204ENST00000470191 PEG3Q9GZU2 1588 aa17.97■□□□□ 0.47
CCDC171-204ENST00000470191 MROH2BQ7Z745 1585 aa17.95■□□□□ 0.46
CCDC171-204ENST00000470191 PDS5BQ9NTI5 1447 aa17.91■□□□□ 0.46
CCDC171-204ENST00000470191 POTEDQ86YR6 584 aa17.82■□□□□ 0.44
CCDC171-204ENST00000470191 MRC2Q9UBG0 1479 aa17.81■□□□□ 0.44
CCDC171-204ENST00000470191 WIZO95785 1651 aa17.79■□□□□ 0.44
CCDC171-204ENST00000470191 CADPSQ9ULU8 1353 aa17.79■□□□□ 0.44
CCDC171-204ENST00000470191 WDR62O43379 1518 aa17.76■□□□□ 0.43
CCDC171-204ENST00000470191 CEP164Q9UPV0 1460 aa17.69■□□□□ 0.42
CCDC171-204ENST00000470191 FANCD2Q9BXW9 1451 aa17.64■□□□□ 0.41
CCDC171-204ENST00000470191 OSCARQ8IYS5 282 aa17.58■□□□□ 0.4
CCDC171-204ENST00000470191 FOXD1Q16676 465 aa17.56■□□□□ 0.4
CCDC171-204ENST00000470191 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.4
CCDC171-204ENST00000470191 CFTRP13569 1480 aa17.51■□□□□ 0.39
CCDC171-204ENST00000470191 RIMBP3CA6NJZ7 1639 aa17.47■□□□□ 0.39
CCDC171-204ENST00000470191 RIMBP3BA6NNM3 1639 aa17.47■□□□□ 0.39
CCDC171-204ENST00000470191 RIMBP3Q9UFD9 1639 aa17.47■□□□□ 0.39
CCDC171-204ENST00000470191 PRDM2Q13029 1718 aa17.47■□□□□ 0.39
CCDC171-204ENST00000470191 TOP2AP11388 1531 aaKnown RBP17.45■□□□□ 0.38
CCDC171-204ENST00000470191 RSF1Q96T23 1441 aaPredicted RBP17.41■□□□□ 0.38
CCDC171-204ENST00000470191 ZNF608Q9ULD9 1512 aaPredicted RBP17.37■□□□□ 0.37
CCDC171-204ENST00000470191 ARHGEF11O15085 1522 aa17.33■□□□□ 0.37
CCDC171-204ENST00000470191 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
CCDC171-204ENST00000470191 EIF4G3O43432 1585 aaKnown RBP17.29■□□□□ 0.36
CCDC171-204ENST00000470191 CHD1O14646 1710 aa17.29■□□□□ 0.36
CCDC171-204ENST00000470191 TOPBP1Q92547 1522 aa17.27■□□□□ 0.36
CCDC171-204ENST00000470191 CCDC88BA6NC98 1476 aa17.26■□□□□ 0.35
CCDC171-204ENST00000470191 CYB5RLQ6IPT4 315 aa17.26■□□□□ 0.35
CCDC171-204ENST00000470191 TRHP20396 242 aaPredicted RBP17.22■□□□□ 0.35
CCDC171-204ENST00000470191 FBLN2P98095 1184 aa17.2■□□□□ 0.34
CCDC171-204ENST00000470191 DNMBPQ6XZF7 1577 aa17.19■□□□□ 0.34
CCDC171-204ENST00000470191 AQRO60306 1485 aaKnown RBP eCLIP17.18■□□□□ 0.34
CCDC171-204ENST00000470191 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
CCDC171-204ENST00000470191 ABCC8Q09428 1581 aa17.15■□□□□ 0.34
CCDC171-204ENST00000470191 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
CCDC171-204ENST00000470191 POLA1P09884 1462 aaPredicted RBP17.07■□□□□ 0.32
CCDC171-204ENST00000470191 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
CCDC171-204ENST00000470191 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.32
CCDC171-204ENST00000470191 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
CCDC171-204ENST00000470191 SOGA1O94964 1423 aa16.99■□□□□ 0.31
CCDC171-204ENST00000470191 CLASP1Q7Z460 1538 aa16.96■□□□□ 0.3
CCDC171-204ENST00000470191 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
CCDC171-204ENST00000470191 FGD5Q6ZNL6 1462 aa16.94■□□□□ 0.3
CCDC171-204ENST00000470191 CHMP7Q8WUX9 453 aaPredicted RBP16.94■□□□□ 0.3
CCDC171-204ENST00000470191 PBRM1Q86U86 1689 aa16.9■□□□□ 0.3
CCDC171-204ENST00000470191 CUX1P39880 1505 aa16.88■□□□□ 0.29
CCDC171-204ENST00000470191 WDR97A6NE52 1622 aa16.88■□□□□ 0.29
CCDC171-204ENST00000470191 MAGI1Q96QZ7 1491 aaPredicted RBP16.87■□□□□ 0.29
CCDC171-204ENST00000470191 GRIN2BQ13224 1484 aa16.86■□□□□ 0.29
CCDC171-204ENST00000470191 SYNJ2O15056 1496 aa16.84■□□□□ 0.29
CCDC171-204ENST00000470191 MSH5O43196 834 aa16.82■□□□□ 0.28
CCDC171-204ENST00000470191 GAPVD1Q14C86 1478 aa16.81■□□□□ 0.28
CCDC171-204ENST00000470191 ERCC6L2Q5T890 1561 aa16.75■□□□□ 0.27
CCDC171-204ENST00000470191 ABCA5Q8WWZ7 1642 aa16.73■□□□□ 0.27
CCDC171-204ENST00000470191 ABCA10Q8WWZ4 1543 aa16.68■□□□□ 0.26
CCDC171-204ENST00000470191 CEP170Q5SW79 1584 aa16.66■□□□□ 0.26
CCDC171-204ENST00000470191 GRIN2AQ12879 1464 aa16.66■□□□□ 0.26
CCDC171-204ENST00000470191 ADAMTS12P58397 1594 aa16.64■□□□□ 0.25
CCDC171-204ENST00000470191 KIF13AQ9H1H9 1805 aa16.63■□□□□ 0.25
CCDC171-204ENST00000470191 SHROOM2Q13796 1616 aa16.58■□□□□ 0.24
CCDC171-204ENST00000470191 NUP160Q12769 1436 aa16.56■□□□□ 0.24
CCDC171-204ENST00000470191 WRNQ14191 1432 aaPredicted RBP eCLIP16.56■□□□□ 0.24
CCDC171-204ENST00000470191 SUPT5HO00267 1087 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms